mRNA_E_fasciculatus_S2_contig9692.17692.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9692.17692.1
Unique NamemRNA_E_fasciculatus_S2_contig9692.17692.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9692.17692.1 vs.
Match: Centrin ((Fragment) n=1 Tax=Acetabularia acetabulum TaxID=35845 RepID=Q8S325_ACEAT)

HSP 1 Score: 173 bits (439), Expect = 5.750e-54
Identity = 89/105 (84.76%), Postives = 99/105 (94.29%), Query Frame = 1
Query:   10 TQNVGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQVLL 324
            T   G+IDAKELKVAMRALGFEPKKEEIKKMI+DIDKDGSGTIDF+EFL MMT+KM E+DSREEI+KAFRLFDDDETGKISF+NLKRVAKELG+NMTDEELQ ++
Sbjct:    7 TDGSGSIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFLSMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGQNMTDEELQEMI 111          
BLAST of mRNA_E_fasciculatus_S2_contig9692.17692.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3FY13_9SPIT)

HSP 1 Score: 165 bits (418), Expect = 9.700e-51
Identity = 84/105 (80.00%), Postives = 96/105 (91.43%), Query Frame = 1
Query:   10 TQNVGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQVLL 324
            T   GTIDAKELKVAMRALGFEPKKEEI+KMI+D D+DGSG IDF EFL+MMT KM+E+D REE+LKAFRLFDDDETGKISF+NLKRVAKELGENMTD+E+Q ++
Sbjct:    3 TDGSGTIDAKELKVAMRALGFEPKKEEIRKMIADADRDGSGVIDFPEFLDMMTQKMAERDPREEMLKAFRLFDDDETGKISFKNLKRVAKELGENMTDDEIQEMI 107          
BLAST of mRNA_E_fasciculatus_S2_contig9692.17692.1 vs.
Match: Uncharacterized (protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DY01_9FUNG)

HSP 1 Score: 166 bits (421), Expect = 2.770e-50
Identity = 84/105 (80.00%), Postives = 97/105 (92.38%), Query Frame = 1
Query:   10 TQNVGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQVLL 324
            T   GTID KELKVAMRALGFEPKKEE+KKMI+++D+ GSG IDF +FLE+MTSKMSEKDSREEI+KAFRLFDDD+TGKISF+NLKRVAKELGEN+TDEELQ ++
Sbjct:   54 TDGSGTIDTKELKVAMRALGFEPKKEELKKMIAEVDRSGSGVIDFNDFLELMTSKMSEKDSREEIVKAFRLFDDDDTGKISFKNLKRVAKELGENLTDEELQEMI 158          
BLAST of mRNA_E_fasciculatus_S2_contig9692.17692.1 vs.
Match: Non-specific (serine/threonine protein kinase n=50 Tax=Eukaryota TaxID=2759 RepID=W7AXP4_PLAVN)

HSP 1 Score: 164 bits (416), Expect = 9.700e-50
Identity = 83/105 (79.05%), Postives = 97/105 (92.38%), Query Frame = 1
Query:   10 TQNVGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQVLL 324
            T   G IDAKELKVAMRALGFEPKKE+I+K+ISD+DKDGSGTIDF +FL++MT KMSE+D +EEILKAFRLFDDDETGKISF+NLKRVAKELGEN+TDEE+Q ++
Sbjct:   38 TNGTGRIDAKELKVAMRALGFEPKKEDIRKIISDVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMI 142          
BLAST of mRNA_E_fasciculatus_S2_contig9692.17692.1 vs.
Match: Caltractin-like (n=2 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A672NHP6_SINGR)

HSP 1 Score: 163 bits (413), Expect = 2.160e-49
Identity = 87/105 (82.86%), Postives = 93/105 (88.57%), Query Frame = 1
Query:   10 TQNVGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQVLL 324
            T   G ID KELKVAMRALGFEPKKEEIKKMI+DIDK+GSG I F +FL MMT KMSEKDS+EEILKAFRLFDDD TGKISF+NLKRVAKELGEN+TDEELQV L
Sbjct:   41 TDGSGNIDVKELKVAMRALGFEPKKEEIKKMIADIDKEGSGVIGFNDFLSMMTQKMSEKDSKEEILKAFRLFDDDCTGKISFKNLKRVAKELGENLTDEELQVRL 145          
BLAST of mRNA_E_fasciculatus_S2_contig9692.17692.1 vs.
Match: Centrin-1 (n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HUF0_SPIPD)

HSP 1 Score: 162 bits (410), Expect = 8.690e-49
Identity = 80/105 (76.19%), Postives = 98/105 (93.33%), Query Frame = 1
Query:   10 TQNVGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQVLL 324
            T   GTID KELKVAMRALGFEPKK+E+K+MI+++D+ GSG+IDF +FLE+MT+KM+EKD+REEI+KAFRLFDDDETGKISF+NLKRVAKELGEN+TDEELQ ++
Sbjct:   41 TDGSGTIDTKELKVAMRALGFEPKKDELKRMIAEVDRTGSGSIDFNDFLELMTAKMAEKDTREEIIKAFRLFDDDETGKISFKNLKRVAKELGENLTDEELQEMI 145          
BLAST of mRNA_E_fasciculatus_S2_contig9692.17692.1 vs.
Match: Uncharacterized (protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LN86_9CHLO)

HSP 1 Score: 161 bits (407), Expect = 1.070e-48
Identity = 81/105 (77.14%), Postives = 96/105 (91.43%), Query Frame = 1
Query:   10 TQNVGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQVLL 324
            T   GTID +ELKVAMRALGFEPKKEEI+K+++D+DKDGSG +D++EFL +MTSKM E+DSREEILKAFRLFDDDETGKIS +NLKRVAKELGEN+TDEELQ ++
Sbjct:   14 TDGSGTIDIRELKVAMRALGFEPKKEEIRKLMTDLDKDGSGVMDYEEFLSVMTSKMGERDSREEILKAFRLFDDDETGKISLKNLKRVAKELGENITDEELQEMI 118          
BLAST of mRNA_E_fasciculatus_S2_contig9692.17692.1 vs.
Match: Uncharacterized (protein n=4 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672GEX2_SALFA)

HSP 1 Score: 161 bits (408), Expect = 1.750e-48
Identity = 84/105 (80.00%), Postives = 94/105 (89.52%), Query Frame = 1
Query:   10 TQNVGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQVLL 324
            T   G ID KELKVAMRALGFEPKKEEIKKMISD+DK+ SGTIDF +FL +MT KMSEKDS+EEILKAFRLFDDD TGKISF+NLKRVAKELGEN+TDEEL+ ++
Sbjct:   41 TDGRGAIDVKELKVAMRALGFEPKKEEIKKMISDLDKENSGTIDFDDFLSIMTQKMSEKDSKEEILKAFRLFDDDCTGKISFKNLKRVAKELGENLTDEELEEMI 145          
BLAST of mRNA_E_fasciculatus_S2_contig9692.17692.1 vs.
Match: Centrin (4 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1DDF6_CYPCA)

HSP 1 Score: 162 bits (411), Expect = 2.460e-48
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 1
Query:   10 TQNVGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQVLL 324
            T   G ID KELKVAMRALGFEPKKEEIKKMI+DIDK+GSG I F +FL MMT KMSEKDS+EEILKAF+LFDDD TGKISF+NLKRVAKELGEN+TDEELQV L
Sbjct:   98 TDGSGNIDVKELKVAMRALGFEPKKEEIKKMIADIDKEGSGVISFNDFLSMMTQKMSEKDSKEEILKAFKLFDDDCTGKISFKNLKRVAKELGENLTDEELQVRL 202          
BLAST of mRNA_E_fasciculatus_S2_contig9692.17692.1 vs.
Match: LOW (QUALITY PROTEIN: caltractin-like n=2 Tax=Crassostrea TaxID=6564 RepID=A0A8B8DBH5_CRAVI)

HSP 1 Score: 161 bits (407), Expect = 2.560e-48
Identity = 83/105 (79.05%), Postives = 95/105 (90.48%), Query Frame = 1
Query:   10 TQNVGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMTDEELQVLL 324
            T   GTIDAKELKVAMRALGFEPKKEEIKKMI+DIDK+GSGTID+ +F  +MT KMSEKD +EEI KAFRLFDDD+TGKISF+NLKRV+KELGEN+TDEELQ ++
Sbjct:   42 TMXSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKEGSGTIDYNDFQNIMTQKMSEKDLKEEIQKAFRLFDDDDTGKISFKNLKRVSKELGENLTDEELQEMI 146          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9692.17692.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Centrin5.750e-5484.76(Fragment) n=1 Tax=Acetabularia acetabulum TaxID=3... [more]
Hypothetical9.700e-5180.00protein (Fragment) n=1 Tax=Strombidium rassoulzade... [more]
Uncharacterized2.770e-5080.00protein n=1 Tax=Powellomyces hirtus TaxID=109895 R... [more]
Non-specific9.700e-5079.05serine/threonine protein kinase n=50 Tax=Eukaryota... [more]
Caltractin-like2.160e-4982.86n=2 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A672N... [more]
Centrin-18.690e-4976.19n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HUF0_... [more]
Uncharacterized1.070e-4877.14protein n=1 Tax=Helicosporidium sp. ATCC 50920 Tax... [more]
Uncharacterized1.750e-4880.00protein n=4 Tax=Salarias fasciatus TaxID=181472 Re... [more]
Centrin2.460e-4881.904 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1D... [more]
LOW2.560e-4879.05QUALITY PROTEIN: caltractin-like n=2 Tax=Crassostr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9692contigE_fasciculatus_S2_contig9692:3999..4879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeApicomplexa
Stop1
Start1
Seed ortholog score167.9
Seed ortholog evalue2.8e-39
Seed eggNOG ortholog5821.PBANKA_020630
Model size360
KEGG koko:K16465
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.EF-hand domain
EggNOG OGs3KAMF@422676,3YB6J@5794,3YXR7@5819,COG5126@1,KOG0028@2759
Cds size360
COG Functional cat.DZ
Best tax levelHaemosporida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842614.14955-CDS-E_fasciculatus_S2_contig9692:3998..41811696842614.14955-CDS-E_fasciculatus_S2_contig9692:3998..4181Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9692 3999..4181 -
1696842614.1653204-CDS-E_fasciculatus_S2_contig9692:4702..48791696842614.1653204-CDS-E_fasciculatus_S2_contig9692:4702..4879Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9692 4703..4879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9692.17692.1prot_E_fasciculatus_S2_contig9692.17692.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9692 3999..4879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9692.17692.1

>prot_E_fasciculatus_S2_contig9692.17692.1 ID=prot_E_fasciculatus_S2_contig9692.17692.1|Name=mRNA_E_fasciculatus_S2_contig9692.17692.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=120bp
MDKTQNVGTIDAKELKVAMRALGFEPKKEEIKKMISDIDKDGSGTIDFQE
FLEMMTSKMSEKDSREEILKAFRLFDDDETGKISFRNLKRVAKELGENMT
DEELQVLLVTHLDVIVCNS*
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mRNA from alignment at E_fasciculatus_S2_contig9692:3999..4879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9692.17692.1 ID=mRNA_E_fasciculatus_S2_contig9692.17692.1|Name=mRNA_E_fasciculatus_S2_contig9692.17692.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=881bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9692:3999..4879- (Ectocarpus fasciculatus EfasUO2)
ATGGATAAAACACAAAACGTAGGGACCATCGATGCGAAAGAGCTGAAGGT GGCAATGCGAGCGCTAGGCTTCGAGCCTAAAAAGGAGGAGATCAAGAAGA TGATCAGCGACATCGACAAGGACGGCTCCGGAACGATCGATTTCCAGGAG TTCTTAGAGATGATGACGTCGAAGATGGTGAGTGGTCGGTCCGGACATGG GACGCAACGCCAAAGGGATCCTAGAAGCTATTCGTTCGGCTCTTTGTCCT TGGCCGAAAATTTGGATCGCAAGCTCTTTTTTCTTGTTTTTTTGTCATGC CCCACCTGCCTGAATGTGTGTGTGTTGTGTTGTTTCTTCTTCGGCACAAG TGCTGTGAGCGCTGATTTGAATTGAAGACAATATGTATATTCGACACAAC GAATCCATCTGTATCCACAGAAAAGAGAATGTGTTTGTGTTTTCGTCCTT GATAAATTGTGACAGTCCCCCCATTTTCCGTAATGAGACGTGTACTACAC TCTTGAGTGTATGAAGAGTACACTCTTCAGTGTAGGTAGAGTACACTCTT CAGTGTAGGTACAGTACTGCACATTTTCAGTACTTTTTTTCGTACAACTA CAACCATCCAGGGTCACAAGTGCTCGATGGATAGTAGCACTGGATCCATA GCGTTAGCGAAGACACTGAATGCCTTTGGTTCGTTGCTGCCGTTTCAGAG CGAGAAAGACTCGAGGGAAGAGATCCTGAAGGCGTTTCGGCTGTTCGATG ACGACGAGACCGGCAAGATCTCCTTCCGCAACCTCAAGAGGGTGGCGAAG GAGCTAGGGGAGAACATGACGGACGAGGAGCTGCAGGTATTGCTTGTGAC TCATCTCGATGTAATAGTCTGTAATAGTTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9692:3999..4879-

>mRNA_E_fasciculatus_S2_contig9692.17692.1 ID=mRNA_E_fasciculatus_S2_contig9692.17692.1|Name=mRNA_E_fasciculatus_S2_contig9692.17692.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=360bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9692:3999..4879- (Ectocarpus fasciculatus EfasUO2)
ATGGATAAAACACAAAACGTAGGGACCATCGATGCGAAAGAGCTGAAGGT
GGCAATGCGAGCGCTAGGCTTCGAGCCTAAAAAGGAGGAGATCAAGAAGA
TGATCAGCGACATCGACAAGGACGGCTCCGGAACGATCGATTTCCAGGAG
TTCTTAGAGATGATGACGTCGAAGATGAGCGAGAAAGACTCGAGGGAAGA
GATCCTGAAGGCGTTTCGGCTGTTCGATGACGACGAGACCGGCAAGATCT
CCTTCCGCAACCTCAAGAGGGTGGCGAAGGAGCTAGGGGAGAACATGACG
GACGAGGAGCTGCAGGTATTGCTTGTGACTCATCTCGATGTAATAGTCTG
TAATAGTTAG
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