mRNA_E_fasciculatus_S2_contig9689.17687.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9689.17687.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI) HSP 1 Score: 276 bits (706), Expect = 1.580e-81 Identity = 133/161 (82.61%), Postives = 141/161 (87.58%), Query Frame = 2
Query: 2 WLTYERDLENAVETYRAAGAAGFRLVFTTSHTIQDSVYGGVFREIVDAYRDNDMEVISKCESQIDRVAAGVTGPEGYGVDAYCRLGLMDRNGSEILNRRSRPVISRLGVPLVEGDLIVKDQEWGTPKGDGRHYHMIVPVEVWEFLGVLVSPFVGELTTAPP 484
WLTYERDLENAVETYRAAG AGFRLVFTTSHTIQDSVY G+FRE+VDAYRD DM VISKCE Q+ R GYGVDAYCRLGLMDRNGSE+LNRRSRPV+SRLGVP VEGDLIVKDQEW TPK DGRHYHM+VPVEVWEFLGVL+SP+VGE TTA P
Sbjct: 354 WLTYERDLENAVETYRAAGGAGFRLVFTTSHTIQDSVYQGLFREMVDAYRDGDMGVISKCEGQVRR---------GYGVDAYCRLGLMDRNGSEVLNRRSRPVMSRLGVPFVEGDLIVKDQEWATPKSDGRHYHMLVPVEVWEFLGVLISPYVGEPTTAHP 505
BLAST of mRNA_E_fasciculatus_S2_contig9689.17687.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH8_9PHAE) HSP 1 Score: 147 bits (371), Expect = 4.950e-35 Identity = 77/123 (62.60%), Postives = 86/123 (69.92%), Query Frame = 2
Query: 2 WLTYERDLENAVETYRAAGAAGFRLVFTTSHTIQ-------------------------DSVYGGVFREIVDAYRDNDMEVISKCESQIDRVAAGVTGPEGYGVDAYCRLGLMDRNGSEILNR 295
WLTYERDLE+AVETYRAAG AGFR S TI DSVY G+FRE+VDAYRD D+EVISKCE ++ ++AAGVTGPEGYGVDAYCRLGLMDRNGSE+LNR
Sbjct: 275 WLTYERDLESAVETYRAAGGAGFRGQLQESLTIHAHFFSRMHAVSPRSTSVWVATGGSVDSVYQGLFREMVDAYRDGDVEVISKCEGKMSQLAAGVTGPEGYGVDAYCRLGLMDRNGSEVLNR 397
BLAST of mRNA_E_fasciculatus_S2_contig9689.17687.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP0_ECTSI) HSP 1 Score: 116 bits (290), Expect = 1.380e-24 Identity = 71/194 (36.60%), Postives = 100/194 (51.55%), Query Frame = 2
Query: 2 WLTYERDLENAVETYRAAGAAGFRLVFTTSHTIQDSVYGGVFREIVDAYRDN--DMEVISKCESQIDR-------------------------VAAGVTGPEGYG---VDAYCRLGLMDRNGSEILNRRSRPVISRLGVPLVEGDLIVKDQEWGTPKGDGRHYHMIVPVEVWEFLGVLVSPFVGELTTAPP*LS 493
WL YE LE V+ R R+VF T+H I D + G +++I AYR+ + + ++C+ Q + +A + PEG G VD YC ++DR GS L+RR+RPV+SRLGVPLV+ IV+ Q W + DGRH+H IVP+EV + L VL +P APP L+
Sbjct: 109 WLNYESLLEGVVQAVRYKSGPNVRVVFMTNHAIADERFQGEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASVKDAHGDFSYSDWHGAPDIAEYMVYPEGQGLFTVDTYCEEAILDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIEVVDLLSVLGAP------PAPPSLT 296
BLAST of mRNA_E_fasciculatus_S2_contig9689.17687.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN9_ECTSI) HSP 1 Score: 114 bits (286), Expect = 4.850e-24 Identity = 62/168 (36.90%), Postives = 88/168 (52.38%), Query Frame = 2
Query: 2 WLTYERDLENAVETYRAAGAAGFRLVFTTSHTIQDSVYGGVFREIVDAYRDNDMEVISKCESQIDR-------------------------VAAGVTGPEGYG---VDAYCRLGLMDRNGSEILNRRSRPVISRLGVPLVEGDLIVKDQEWGTPKGDGRHYHMIVPVE 421
WL YE LE VE RA ++ F T+H I D ++ G ++EI AYR+ + + E Q + +A +T PEG G VD YC ++DR GS ++RR+RPV+SRLGVP+V+ IV+ Q W +P DGRH+H +VP+E
Sbjct: 190 WLNYESLLEGVVEGVRAKNGQDVKVAFMTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPGDFRYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLHMSRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 357
BLAST of mRNA_E_fasciculatus_S2_contig9689.17687.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK8_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 3.230e-19 Identity = 51/140 (36.43%), Postives = 75/140 (53.57%), Query Frame = 2
Query: 86 TSHTIQDSVYGGVFREIVDAYRDNDMEVISKCESQIDR-------------------------VAAGVTGPEGYG---VDAYCRLGLMDRNGSEILNRRSRPVISRLGVPLVEGDLIVKDQEWGTPKGDGRHYHMIVPVE 421
T+H I D ++ G ++EI AYR+ + + E Q + +A +T PEG G VD YC ++DR GS ++RR+RPV+SRLGVP+V+ IV+ Q W +P DGRH+H +VP+E
Sbjct: 2 TNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPGDFRYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLQMSRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 141
BLAST of mRNA_E_fasciculatus_S2_contig9689.17687.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP29_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 1.420e-13 Identity = 39/148 (26.35%), Postives = 77/148 (52.03%), Query Frame = 2
Query: 2 WLTYERDLENAVETYRAAGAAGFRLVFTTSHTIQDSVYGGVFREIVDAYRDNDMEVISKCESQIDRVAAGVTGPEGYGVDAYCRLGLMDRNGSEILNRRSRPVISRLGVPLVEGDLIVKDQEWGTPKGDGRHYHMIVPVEVWEFLGVL 445
W Y+ L + +R +LV+ T+HTI +S Y G ++ ++ Y+ D + C+ + + + + P ++ C + +G ++LN + V+ +GVP+V ++V+ Q+W TP GDGRH+ + P+E++ +L
Sbjct: 103 WENYDTLLSERIGGWREVNP-DIKLVYMTTHTIDESKYYGEWKTALEGYKARDPVFLEPCKLKFEEILPSES-PLRDDLEQVCIDTVFGAHGVQLLNEQGLAVMKEMGVPVVPAHMLVEGQQWATPDGDGRHFPYLTPLELFWLFNIL 248 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9689.17687.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9689.17687.1 >prot_E_fasciculatus_S2_contig9689.17687.1 ID=prot_E_fasciculatus_S2_contig9689.17687.1|Name=mRNA_E_fasciculatus_S2_contig9689.17687.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=109bp MEVISKCESQIDRVAAGVTGPEGYGVDAYCRLGLMDRNGSEILNRRSRPVback to top mRNA from alignment at E_fasciculatus_S2_contig9689:927..5686+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9689.17687.1 ID=mRNA_E_fasciculatus_S2_contig9689.17687.1|Name=mRNA_E_fasciculatus_S2_contig9689.17687.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4760bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9689:927..5686+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9689:927..5686+ >mRNA_E_fasciculatus_S2_contig9689.17687.1 ID=mRNA_E_fasciculatus_S2_contig9689.17687.1|Name=mRNA_E_fasciculatus_S2_contig9689.17687.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9689:927..5686+ (Ectocarpus fasciculatus EfasUO2)back to top |