mRNA_E_fasciculatus_S2_contig9683.17684.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9683.17684.1
Unique NamemRNA_E_fasciculatus_S2_contig9683.17684.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9683.17684.1 vs.
Match: PhoD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC9_ECTSI)

HSP 1 Score: 480 bits (1235), Expect = 1.330e-167
Identity = 224/236 (94.92%), Postives = 232/236 (98.31%), Query Frame = 1 
Query:    1 RAQGTKASWENRGFMGPAQWDRVTEAFENDFDSCDVVMFGTPTPLVFLSQTATGVAQKKIDDARGTWGHSDFEIEQQAVTKLLTDWQNGRRNRAVITLGGDVHMGGFTDSWHNGSDIPLHQMTASAVGNQPEGGMTTPREVALRSAMHADERLFDFKVEHHEWIYGANYGMLDFKLHEQGHGRHRPHVTLTLVGEKGDPKVRNLQFGNDSVGLKDKDHSAASEAAHAAAEVMGVPP 708
            RAQGTK+SWENR FMGPAQWDRVTEAFENDFDSCDVVMFGTPTPLVFLSQTATGVAQKKIDDARGTWGHSDF+IEQQA+TKLL+DWQN RRNRAVITLGGDVHMGGFTDSWHNGSDIPLHQ+TASAVGNQPEGGMTTPREVALRSAMHADERLFDFKVEHHEWIYGANYGMLDFKLHEQGHGRHRPHVTLTLVGEKGDPKVRNLQFGN SVGLK+++HS ASEAAHAAAEVMGVPP
Sbjct:  250 RAQGTKSSWENRAFMGPAQWDRVTEAFENDFDSCDVVMFGTPTPLVFLSQTATGVAQKKIDDARGTWGHSDFKIEQQAITKLLSDWQNARRNRAVITLGGDVHMGGFTDSWHNGSDIPLHQLTASAVGNQPEGGMTTPREVALRSAMHADERLFDFKVEHHEWIYGANYGMLDFKLHEQGHGRHRPHVTLTLVGEKGDPKVRNLQFGNSSVGLKNREHSEASEAAHAAAEVMGVPP 485
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BLAST of mRNA_E_fasciculatus_S2_contig9683.17684.1 vs.
Match: PhoD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV8_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 1.010e-95
Identity = 139/230 (60.43%), Postives = 168/230 (73.04%), Query Frame = 1 
Query:   19 ASWENRGFMGPAQWDRVTEAFENDFDSCDVVMFGTPTPLVFLSQTATGVAQKKIDDARGTWGHSDFEIEQQAVTKLLTDWQNGRRNRAVITLGGDVHMGGFTDSWHNGSDIPLHQMTASAVGNQPEGGMTTPREVALRSAMHADERLFDFKVEHHEWIYGANYGMLDFKLHEQGHGRHRPHVTLTLVGEKGDPKVRNLQFGNDSVGLKDKDHSAASEAAHAAAEVMGVPP 708
            A W +R FMGP QWDR+ EAF  DF  C  V FGTPTPLVF+SQ+ATGVA+K I DA+GTWG+ DF  EQ+A   LL  WQ  R NRA ITLGGD+H+GGFTDSWH+ SD+PLHQMTASA+GN PE  +   +E+ +R  MHADE LF FKV+HHEWIYG NYGM+D  L +   G +RP +TLTLV   GDPK+RNL+ G+  V +K    SAAS +AH  A++M VPP
Sbjct:  308 AEWVDREFMGPDQWDRIKEAFSADFAECQTVFFGTPTPLVFISQSATGVAEKVIVDAKGTWGNKDFISEQKAALSLLNSWQLARPNRAAITLGGDLHLGGFTDSWHDESDVPLHQMTASAIGNMPEKDLDAVKEMVIRGVMHADENLFAFKVKHHEWIYGPNYGMVDLLLPK---GSNRPDITLTLVPHVGDPKIRNLELGSADVEVKKAGQSAASRSAHVTAKIMAVPP 534
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BLAST of mRNA_E_fasciculatus_S2_contig9683.17684.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ5_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 1.940e-92
Identity = 135/241 (56.02%), Postives = 166/241 (68.88%), Query Frame = 1 
Query:   19 ASWENRGFMGPAQWDRVTEAFENDFDSCDVVMFGTPTPLVFLSQTATGVAQKKIDDARGTWGHSDFEIEQQAVTKLLTDWQNGRRNRAVITLGGDVHMGGFTDSW-----------HNGSDIPLHQMTASAVGNQPEGGMTTPREVALRSAMHADERLFDFKVEHHEWIYGANYGMLDFKLHEQGHGRHRPHVTLTLVGEKGDPKVRNLQFGNDSVGLKDKDHSAASEAAHAAAEVMGVPP 708
            A W +R FMGP QWDR+  AF  DF  C  V FGTPTPLVF+SQ+ATGVA+K I DA+GTWG+ DF  EQ+A   LL  WQ  R NRA ITLGGD+H+GGFTDSW           H+ SD+PLHQMTASA+GN PE  +   +E+ +R  MHA E LF FKV+HHEW+YG NYGM+D  L +   G  RP +TLTLV   GDPK+RNL+ G+  + +K  D SAAS +A+  A++M VPP
Sbjct:   92 AEWVDREFMGPDQWDRLKAAFSADFAECQTVFFGTPTPLVFISQSATGVAEKVIVDAKGTWGNKDFISEQKAALSLLNSWQLARSNRAAITLGGDLHLGGFTDSWCCVPAVVSRLQHDESDVPLHQMTASAIGNMPEKDLDAVKEMVIRGVMHAGENLFAFKVKHHEWVYGPNYGMVDLLLPK---GSDRPDITLTLVPHVGDPKIRNLELGSADIEVKKADQSAASRSAYVTAKIMAVPP 329
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BLAST of mRNA_E_fasciculatus_S2_contig9683.17684.1 vs.
Match: PhoD (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTV9_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 4.820e-90
Identity = 129/232 (55.60%), Postives = 168/232 (72.41%), Query Frame = 1 
Query:   13 TKASWENRGFMGPAQWDRVTEAFENDFDSCDVVMFGTPTPLVFLSQTATGVAQKKIDDARGTWGHSDFEIEQQAVTKLLTDWQNGRRNRAVITLGGDVHMGGFTDSWHNGSDIPLHQMTASAVGNQPEGGMTTPREVALRSAMHADERLFDFKVEHHEWIYGANYGMLDFKLHEQGHGRHRPHVTLTLVGEKGDPKVRNLQFGNDSVGLKDKDHSAASEAAHAAAEVMGVPP 708
            ++A W++R F+GP QW R+ +AF  DF  C+ V+FG PTPLVF+SQ ATGVA+K IDDARGTWGH  F  EQ+A+T LL++WQ  + NRAV+TL GDVH+GGFTDSWHN + +PLHQMTASAVGN PE  +   +E  LR  MHADE +F+FKV+HH WI+G N+G+LD +L   G    RP + +TLV   GDPK+RNL+ GN  + + + + S AS AAHA A+ +   P
Sbjct:  362 SEAEWKDREFLGPKQWTRLEQAFRTDFADCETVLFGAPTPLVFISQAATGVAEKIIDDARGTWGHRRFITEQKAMTSLLSNWQTAKPNRAVVTLAGDVHIGGFTDSWHNDASVPLHQMTASAVGNTPEKDLDIVKESLLRGIMHADEHMFEFKVKHHGWIFGPNFGVLDIQLATGG----RPDIAMTLVPHVGDPKIRNLELGNSKISVTNPNQSDASRAAHACAKTLDHSP 589
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9683.17684.1 vs.
Match: PhoD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSS6_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.900e-24
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 RAQGTKASWENRGFMGPAQWDRVTEAFENDFDSCDVVMFGTPTPLVFLSQT 153
            RAQGTK+SWENR FMGPAQWDRVTEAFENDFDSCDVV+FGTPTPLVFLSQT
Sbjct:  250 RAQGTKSSWENRTFMGPAQWDRVTEAFENDFDSCDVVLFGTPTPLVFLSQT 300
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9683.17684.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
PhoD1.330e-16794.92domain-containing protein n=1 Tax=Ectocarpus silic... [more]
PhoD1.010e-9560.43domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.940e-9256.02protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
PhoD4.820e-9055.60domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
PhoD6.900e-2494.12domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9683contigE_fasciculatus_S2_contig9683:138..3224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start0
Seed ortholog score91.7
Seed ortholog evalue5.1e-16
Seed eggNOG ortholog3218.PP1S155_57V6.1
Model size711
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.PhoD-like phosphatase
EggNOG OGs28H57@1,2QPI0@2759,37XUB@33090,3GNK5@35493
Cds size711
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9683.17684.1prot_E_fasciculatus_S2_contig9683.17684.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9683 138..3224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842613.3237734-CDS-E_fasciculatus_S2_contig9683:137..2891696842613.3237734-CDS-E_fasciculatus_S2_contig9683:137..289Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9683 138..289 +
1696842613.3351166-CDS-E_fasciculatus_S2_contig9683:709..7781696842613.3351166-CDS-E_fasciculatus_S2_contig9683:709..778Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9683 710..778 +
1696842613.3533504-CDS-E_fasciculatus_S2_contig9683:1103..12151696842613.3533504-CDS-E_fasciculatus_S2_contig9683:1103..1215Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9683 1104..1215 +
1696842613.3644922-CDS-E_fasciculatus_S2_contig9683:1612..17501696842613.3644922-CDS-E_fasciculatus_S2_contig9683:1612..1750Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9683 1613..1750 +
1696842613.3754525-CDS-E_fasciculatus_S2_contig9683:2214..23111696842613.3754525-CDS-E_fasciculatus_S2_contig9683:2214..2311Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9683 2215..2311 +
1696842613.3861177-CDS-E_fasciculatus_S2_contig9683:3081..32241696842613.3861177-CDS-E_fasciculatus_S2_contig9683:3081..3224Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9683 3082..3224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9683.17684.1

>prot_E_fasciculatus_S2_contig9683.17684.1 ID=prot_E_fasciculatus_S2_contig9683.17684.1|Name=mRNA_E_fasciculatus_S2_contig9683.17684.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=237bp
RAQGTKASWENRGFMGPAQWDRVTEAFENDFDSCDVVMFGTPTPLVFLSQ
TATGVAQKKIDDARGTWGHSDFEIEQQAVTKLLTDWQNGRRNRAVITLGG
DVHMGGFTDSWHNGSDIPLHQMTASAVGNQPEGGMTTPREVALRSAMHAD
ERLFDFKVEHHEWIYGANYGMLDFKLHEQGHGRHRPHVTLTLVGEKGDPK
VRNLQFGNDSVGLKDKDHSAASEAAHAAAEVMGVPP*
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mRNA from alignment at E_fasciculatus_S2_contig9683:138..3224+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9683.17684.1 ID=mRNA_E_fasciculatus_S2_contig9683.17684.1|Name=mRNA_E_fasciculatus_S2_contig9683.17684.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3087bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9683:138..3224+ (Ectocarpus fasciculatus EfasUO2)
AGGGCTCAGGGAACCAAGGCCTCCTGGGAGAACCGCGGTTTCATGGGACC
GGCGCAATGGGATAGGGTGACCGAGGCGTTCGAAAACGACTTCGACTCGT
GCGACGTGGTCATGTTTGGCACCCCTACCCCCCTCGTCTTCCTAAGCCAG
ACGTAAGTGTACATGTCATGCCGCTGCTTACTTCGGGCGTTCGGTTTGAC
GTATTTTCCTGTTGCTCTTTATTTTTCGTTATATGTTTACCATTTTTGCC
ATCGTCAGAAGATGTTTATTTTGTTCTGTGCTGTGAAGTTTTTATTTTCA
CCGCATTTTTACCATTGCGTTCATAACAAATACTGCAGTTATTTGTTGTT
TGTCTTTTCTAGGGCACAACAAAGTGAATAGTCCTTAATGCCCTCGTCTA
ATGTTTTTTTTTTCCTCCTTTTTTTTCACAGTATATCTCGCACACGGGTA
TTCGATTTTTGATTTTTCCGTTGTTTTGCGTTTGTTACCCGTTAGTTTTG
GTTGATGTTGTTGCTGTTCGTCGTAGTTTGACTGACGTCATTGTCGCTAT
CATTTATTTATTTTTTACTCAGGGCTACTGGGGTGGCGCAGAAAAAGATC
GACGATGCGCGGGGCACGTGGGGGCACAGCGACTTCGAGATGTGAGCCAT
GGGTGCAGGAAAGGGGTTGGCTCTGTCTTGGAAAATATGCTCTGTGTTTC
GTGATTGTTGCAAGCCATGCTGGTAGAAATTGGCCTTTGTATTGTTGTTG
TTGTTTTTGAAACGGCTGCCGGGACTTTAAGCGTGGCGAGGGGATAAGGT
ACATATATCCGCTGGCGTCTTCTCGACTGTGCCGCTCATGACCTGCGTAA
GTAGTCATTTGTTTGCGAGAAATAAAGATGGGGTGTAATTCTCAACACTT
TTCTTGCCTGCATCCCCCCTGCCGTCGGACGCCATGATGGTACATGGTGT
TTTTCTAACCTTGTAGCGAGCAGCAGGCTGTCACAAAGCTGCTGACGGAC
TGGCAGAACGGACGTAGGAACCGGGCCGTGATCACGCTTGGCGGCGACGT
GCACATGGGAGGCTTCACCGACTCGTGGGTGAGTGTTAGCCATACAGCAG
TGGGGGAGGAGTGTTTAGTACCGTTTGAGTGATATCGTCGGTGCCTCAGG
TCGACAAAGTAGCGTGCAGCAGGAGGCCCCTGTTGGGCGAGATATTGCTG
TATGGGGATGTTAGTTGTCGGCCGTGTACGGCCGAGAGAGAGAGAGAGCC
CGAGGTGGAGTGTAAACTGAGGCAACAGCAGCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTTAAACGACTTAAAGTTCAATGGGAGCAGT
CAGGTTTGCACACTTAATGTTTTTCGTGCTGTCAACGCCGTTCGTGTTAC
TTGCGTGGCTTTGCTTGACCTTCTCCCGTCCATTGTGCCGCACGTTTCGT
GCCCCCTCCCCCCCCTCAACTACAGCACAACGGGTCTGACATCCCGCTTC
ACCAGATGACGGCCTCTGCTGTGGGTAACCAGCCTGAGGGAGGCATGACC
ACCCCCAGGGAGGTGGCCTTGAGGAGCGCGATGCACGCGGATGAGCGCTT
GTTCGATTTCAAGGTGATGGGGCTGTCGTGTTTGTTTAGGTGGTGGTGGT
GGTGTTGTGCAAGGGCGTGTTTGATGGAGTGTCCTATTTCTCAAGCATGG
TTGAGTACCATGTGCCCGTGGTGCGATGCACGTACTCGGTGAATACCCCT
CTATGTAGGCAATAGTGAAATCAATAAATCAATGACGTCAGTCGTGCGGG
GCACTTCTGATTCACACTGCTGTACATCACTCGCGACTACTCGTCGTCTA
GGGTCAGCGGCGGTGGATTCATGAGTACCGCAGTACAGAAGCTCGTACGG
ATGCCCGCGCCCGCCGATGCAACACCCTCGTAGGCACCAACGGTGTGCAC
GGGAGGCCTTGCAAAGAAATGCCCGCCCGTACTTGAGAATTTGTTGTCGC
TGCTACTGCTGCTGCTGCTAACTTGATGCCGCTGCTGCTGCCCATTGTGT
CCTGCTGCTGTGGTATGTATGTGACAGGTGGAGCACCACGAGTGGATCTA
CGGCGCGAACTACGGCATGTTGGACTTCAAGCTCCACGAGCAGGGCCACG
GCCGCCACCGCCCTCACGTCACCCGTAAGTGCCCTCTTTTCTCACTCCCT
TTGCCCCCCTCCCCACACCCCCTTGTTCGTCAGCCACGTTTGGCAAAGTA
GGAAGGAACGATTGGCCATCGGCGATCGGTCCTGTGGGAAAAGTACGCCG
TCCTCTCGAGGACGCGTGGTCAATGGTCTAACCGCTGAGGCATGCAAAAA
ACACGAGTACACACACCCCGCCGACTCTCATTTCCTCAACTACTGTGTCG
GCTGATAAAAATATTGCCCAAACCTTGGTCGTGCCATGCGCTCTTCCGTC
CAGTTTGACCCACGCGCTTGCGGCCGGCTCTATCTAGCAGACATTTGTGG
AAGTACCGCCTTGGTTGATACCATGGGGGGTAGTAGTGTTTGGATGACTT
GGACATGTGTCGGCAGTCTTTGCTTTGAAACCGGAGCAGTGCTGCATCAC
TTGTTTTTTTTTGTAAGTTTAACGAACACTTCCCGGTGCCACAAGACCCC
GACGAGGGAGAGTCGAAAATGACAACGAACTAAGTTACAGTAGCCCAGGA
CGTGACGATGAGGAGCACAACGGTAACCTCTCTTGGTGAACATGAACCAT
AAAATGGTTTAGTCAAGACTCTTTTACATGTATTATAGTCCCTAGACGAT
GACGACGGCGGCAACGGTACGTGATGCCAACACCACCCCACCAGCAACAA
CAACAACAACCGGCAACCACAGTGATACAACAACCCTCTCTGGATGTACT
TCCGTCCCCGTCATTCTCTTGCCGTTTTTCTTGTGCGGCGTCAGTGACTC
TGGTGGGGGAGAAGGGAGACCCCAAGGTCCGCAACCTTCAGTTCGGAAAC
GACTCGGTTGGGCTAAAGGACAAGGACCACTCCGCGGCTTCGGAAGCTGC
CCACGCGGCTGCCGAGGTCATGGGGGTGCCCCCTTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9683:138..3224+

>mRNA_E_fasciculatus_S2_contig9683.17684.1 ID=mRNA_E_fasciculatus_S2_contig9683.17684.1|Name=mRNA_E_fasciculatus_S2_contig9683.17684.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=711bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9683:138..3224+ (Ectocarpus fasciculatus EfasUO2)
AGGGCTCAGGGAACCAAGGCCTCCTGGGAGAACCGCGGTTTCATGGGACC
GGCGCAATGGGATAGGGTGACCGAGGCGTTCGAAAACGACTTCGACTCGT
GCGACGTGGTCATGTTTGGCACCCCTACCCCCCTCGTCTTCCTAAGCCAG
ACGGCTACTGGGGTGGCGCAGAAAAAGATCGACGATGCGCGGGGCACGTG
GGGGCACAGCGACTTCGAGATCGAGCAGCAGGCTGTCACAAAGCTGCTGA
CGGACTGGCAGAACGGACGTAGGAACCGGGCCGTGATCACGCTTGGCGGC
GACGTGCACATGGGAGGCTTCACCGACTCGTGGCACAACGGGTCTGACAT
CCCGCTTCACCAGATGACGGCCTCTGCTGTGGGTAACCAGCCTGAGGGAG
GCATGACCACCCCCAGGGAGGTGGCCTTGAGGAGCGCGATGCACGCGGAT
GAGCGCTTGTTCGATTTCAAGGTGGAGCACCACGAGTGGATCTACGGCGC
GAACTACGGCATGTTGGACTTCAAGCTCCACGAGCAGGGCCACGGCCGCC
ACCGCCCTCACGTCACCCTGACTCTGGTGGGGGAGAAGGGAGACCCCAAG
GTCCGCAACCTTCAGTTCGGAAACGACTCGGTTGGGCTAAAGGACAAGGA
CCACTCCGCGGCTTCGGAAGCTGCCCACGCGGCTGCCGAGGTCATGGGGG
TGCCCCCTTAA
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