mRNA_E_fasciculatus_S2_contig9680.17682.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9680.17682.1
Unique NamemRNA_E_fasciculatus_S2_contig9680.17682.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9680.17682.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR99_ECTSI)

HSP 1 Score: 1346 bits (3484), Expect = 0.000e+0
Identity = 702/800 (87.75%), Postives = 724/800 (90.50%), Query Frame = 1 
Query:    1 QVVCSEFVRCDRRSGPSATKHGGDGSTN----GRNNGLVYACIEASGLLRLWEWGGDAGGLWSWMYLNSCNICACREDPIGCRVLMAVIVPDPVDGEGKGSSNRRNRLVWEQEDNGEGAGLGLASTPSTDPRSSCRVWSRRVSFDLAEGSIGGGNLGSSHQQXXXXXATEEGAGAGFGSGGASNRAMGTRSEISLAFSACLLPKGVDELLCSRHGVWMPTGPRVYLNHFPTGRLHCFVIPSLRDSGAGRSDARGTAPEGGGLDYRRDAHRGGDADGSGIFTESESGPGIGESALREGGGRGATTSDDETTADDFAEKASSPPS-PRCLFAVHEPTGDLMLYDHHPCATVRVLSLPPGSGGLKLRVQCTLDIPPVLESPPRSFSVRSNVAVFCGGGVCSMYDLCTGFFLGTVDIPRCRACAVSKRRDRSKTSGAVSLSPAFSCSCGRQQGLSATELFDGRLAASTSPRLWASETRGHLTGILTATQVLRVKLPRMEECLRTIFEPSRRGSS-PPPAPRVLRYLREYRRHVDGSASDSWPTSLLPELLRMAQQGNRADATPTSSQATLGVHMMGLIGHTLAGEERGRSDVAAVAETAASNNPRETPVPPWLLLAMVSAAQNRGRERGSRCAAAAGGIHGAPRSGGGDPATAATEEGLRNSLERRVSESLRSLSSVRALLQDPAGSARQHVGDGRIGALRSAADDEAAIKLAALTADMDPATALFEGTLREWLASRRRGKGEGVLFNGGRRPAEGSVLRGERRLSGIGLGRPEATDAGESRTVLDDAMALAFRCEAADDKEAT 2382
            +VVCSEFVRCDRRSGPSATKHGGDGST     G NNGLVYACIEASGLLRLWEWGGDA GLWSW YLNSCNICACREDPIGCRVL A IVPDPVDGEG  SSNRRNRLVWEQED+GEGAGLGLASTPSTDPRSS RVWSRRVSFDLAEGSI GGNLGS+HQQ     A EEG GAGFGSG ASNR +G+RSEISLAFSACLLPKG+DELLCSR GVWMPTGPRVYLNHFPTGRLHCFV+P LRD G GRSDA   A +GGGLD RRDAHRGGDADGSG FTESESGPG GESALREGGGRGAT SDDE TA+DFAEKASSP S PRCL AVHEPTGDLMLYDHHPCATVRVLSLPPGSGGLKLRVQCTLDIPPVLESPP SFSVRSNVAVFCGGGVCSMYDLCTG+FLGT DIPRC ACA   RR RSKT GAVS SPA SCSCGR+QGLSATEL D RLAASTSPRLWASETRGHLTGILTATQVLR+KLPRMEECLRTIF PSRRG+S PPPAPR+LRYLREYRR VDGSAS+SWPTSLLPELLR+ QQGN ADATPTSSQATLG  MMGLIGHTLAGEERGRSDVAAVAETAA+NNP+  PVPPWLLLAMVSAAQNRGRERGS   A  GGIHG PRSGGGDPATAATEEGLRNSLERRVSESLRSLSSVRALLQDP GSARQHVGDGR+GALRSAADDEAAIKLAALTAD+DPATALFEGTLREWLASRRRGKGEG+ F GG RPAEGSVLRGE+R SGI LGR EA  AGESRTVLD AMALAFRCEAADDKEAT
Sbjct:  177 EVVCSEFVRCDRRSGPSATKHGGDGSTKSNSKGCNNGLVYACIEASGLLRLWEWGGDASGLWSWRYLNSCNICACREDPIGCRVLTAAIVPDPVDGEGNRSSNRRNRLVWEQEDSGEGAGLGLASTPSTDPRSSRRVWSRRVSFDLAEGSISGGNLGSAHQQQPQH-AAEEGTGAGFGSGDASNRTVGSRSEISLAFSACLLPKGIDELLCSRLGVWMPTGPRVYLNHFPTGRLHCFVLPGLRDGGTGRSDACANARQGGGLDNRRDAHRGGDADGSGTFTESESGPGFGESALREGGGRGATNSDDEATAEDFAEKASSPASSPRCLLAVHEPTGDLMLYDHHPCATVRVLSLPPGSGGLKLRVQCTLDIPPVLESPPHSFSVRSNVAVFCGGGVCSMYDLCTGYFLGTADIPRCSACAAG-RRHRSKTCGAVSPSPALSCSCGRRQGLSATELLDSRLAASTSPRLWASETRGHLTGILTATQVLRLKLPRMEECLRTIFGPSRRGNSRPPPAPRILRYLREYRRLVDGSASNSWPTSLLPELLRLVQQGNSADATPTSSQATLGAQMMGLIGHTLAGEERGRSDVAAVAETAAANNPKGAPVPPWLLLAMVSAAQNRGRERGSPYTAEGGGIHGVPRSGGGDPATAATEEGLRNSLERRVSESLRSLSSVRALLQDPVGSARQHVGDGRVGALRSAADDEAAIKLAALTADVDPATALFEGTLREWLASRRRGKGEGLSFKGGPRPAEGSVLRGEQRPSGIDLGRAEAAGAGESRTVLDGAMALAFRCEAADDKEAT 974
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9680.17682.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized0.000e+087.75protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR99... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9680contigE_fasciculatus_S2_contig9680:2633..5359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size2382
Hectar predicted targeting categoryother localisation
Exons2
Cds size2382
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842613.2129333-CDS-E_fasciculatus_S2_contig9680:2632..41391696842613.2129333-CDS-E_fasciculatus_S2_contig9680:2632..4139Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9680 2633..4139 +
1696842613.22443-CDS-E_fasciculatus_S2_contig9680:4484..53591696842613.22443-CDS-E_fasciculatus_S2_contig9680:4484..5359Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9680 4485..5359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9680.17682.1prot_E_fasciculatus_S2_contig9680.17682.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9680 2633..5359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9680.17682.1

>prot_E_fasciculatus_S2_contig9680.17682.1 ID=prot_E_fasciculatus_S2_contig9680.17682.1|Name=mRNA_E_fasciculatus_S2_contig9680.17682.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=794bp
QVVCSEFVRCDRRSGPSATKHGGDGSTNGRNNGLVYACIEASGLLRLWEW
GGDAGGLWSWMYLNSCNICACREDPIGCRVLMAVIVPDPVDGEGKGSSNR
RNRLVWEQEDNGEGAGLGLASTPSTDPRSSCRVWSRRVSFDLAEGSIGGG
NLGSSHQQQQQQHATEEGAGAGFGSGGASNRAMGTRSEISLAFSACLLPK
GVDELLCSRHGVWMPTGPRVYLNHFPTGRLHCFVIPSLRDSGAGRSDARG
TAPEGGGLDYRRDAHRGGDADGSGIFTESESGPGIGESALREGGGRGATT
SDDETTADDFAEKASSPPSPRCLFAVHEPTGDLMLYDHHPCATVRVLSLP
PGSGGLKLRVQCTLDIPPVLESPPRSFSVRSNVAVFCGGGVCSMYDLCTG
FFLGTVDIPRCRACAVSKRRDRSKTSGAVSLSPAFSCSCGRQQGLSATEL
FDGRLAASTSPRLWASETRGHLTGILTATQVLRVKLPRMEECLRTIFEPS
RRGSSPPPAPRVLRYLREYRRHVDGSASDSWPTSLLPELLRMAQQGNRAD
ATPTSSQATLGVHMMGLIGHTLAGEERGRSDVAAVAETAASNNPRETPVP
PWLLLAMVSAAQNRGRERGSRCAAAAGGIHGAPRSGGGDPATAATEEGLR
NSLERRVSESLRSLSSVRALLQDPAGSARQHVGDGRIGALRSAADDEAAI
KLAALTADMDPATALFEGTLREWLASRRRGKGEGVLFNGGRRPAEGSVLR
GERRLSGIGLGRPEATDAGESRTVLDDAMALAFRCEAADDKEAT
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mRNA from alignment at E_fasciculatus_S2_contig9680:2633..5359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9680.17682.1 ID=mRNA_E_fasciculatus_S2_contig9680.17682.1|Name=mRNA_E_fasciculatus_S2_contig9680.17682.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2727bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9680:2633..5359+ (Ectocarpus fasciculatus EfasUO2)
CAGGTTGTGTGCAGCGAGTTTGTTCGCTGTGACCGCCGCTCGGGACCATC
CGCTACAAAACATGGCGGAGATGGATCAACCAACGGCCGCAACAACGGCC
TAGTCTACGCGTGTATCGAGGCCAGCGGCTTGCTACGCCTGTGGGAGTGG
GGGGGAGACGCGGGTGGCCTGTGGAGCTGGATGTATCTCAACAGCTGCAA
CATATGCGCCTGCCGGGAGGATCCGATAGGCTGCCGCGTGTTGATGGCCG
TGATAGTGCCCGATCCCGTCGACGGCGAGGGCAAGGGTAGTAGCAACAGG
CGGAACCGGCTGGTATGGGAACAGGAAGACAATGGGGAGGGCGCCGGGCT
TGGCCTGGCCTCCACTCCTTCCACCGACCCGCGCTCGTCTTGCAGAGTGT
GGTCTCGCAGGGTGTCCTTTGATTTGGCGGAGGGAAGCATAGGTGGCGGT
AATCTCGGCTCCTCCCACCAACAGCAGCAGCAGCAGCACGCTACCGAAGA
GGGCGCCGGGGCCGGGTTTGGAAGTGGTGGCGCCAGCAACAGGGCCATGG
GCACGAGATCGGAAATCTCGCTGGCCTTTTCGGCGTGCCTCTTGCCGAAA
GGGGTGGACGAGCTTCTGTGCAGCCGGCATGGAGTGTGGATGCCGACCGG
CCCGCGAGTATACTTGAACCACTTTCCCACGGGTCGCTTGCATTGTTTTG
TTATCCCAAGCCTCCGAGACAGTGGAGCCGGAAGGAGCGATGCCCGTGGC
ACTGCCCCGGAGGGCGGCGGGCTTGACTACCGTCGCGATGCCCATCGCGG
TGGAGATGCAGACGGGAGCGGCATCTTCACGGAGTCGGAAAGCGGCCCGG
GAATCGGAGAGTCGGCGCTGAGAGAAGGTGGCGGCAGAGGCGCAACAACT
TCTGACGATGAAACCACCGCCGACGACTTTGCGGAGAAGGCCTCCTCGCC
ACCTTCTCCGCGATGCCTGTTTGCCGTGCACGAGCCAACCGGGGATCTAA
TGCTGTATGATCACCACCCCTGCGCTACCGTGCGCGTGCTCTCTCTGCCG
CCGGGATCGGGCGGTCTCAAGCTGCGTGTGCAGTGCACGCTCGATATTCC
GCCGGTCCTGGAGTCCCCACCACGTTCTTTTTCCGTACGCTCGAACGTGG
CCGTATTTTGCGGCGGTGGGGTTTGCTCGATGTACGACCTTTGCACCGGA
TTTTTTCTGGGCACAGTGGACATCCCTCGTTGTCGTGCCTGTGCGGTAAG
TAAGCGCCGTGACAGGTCCAAGACAAGTGGTGCTGTCTCTTTGTCTCCGG
CTTTCTCCTGCTCGTGCGGGCGGCAACAGGGGCTAAGCGCGACTGAGCTG
TTTGATGGTCGATTAGCGGCTTCCACCAGCCCTAGATTGTGGGCGTCCGA
GACACGGGGGCATTTAACAGGGATCCTCACAGCAACGCAGGTGCTTCGAG
TCAAGCTTCCTAGGATGGAGGAATGCCTACGAACTATATTTGAACCTTCG
CGAAGAGGTGAGGGGAACAGGGGCGTTAATATATATATATTTCCTTGTAG
AGACGACTGCCACGTTGAATTGGATGCTCCTCCGATGTGTCGTTGTTTGG
AGGCTTTTGAAATCCCTGCGGTATTGCTCACTTTTCATATCTGCGTACTC
TTTGTCAACTGTACGCATAAACGCGGCAGAGAAGTCTGAGGGCTATACGG
GATGTGATTGGTTCAACTCTGTGCCTGTCTCTTCACTGCATTCCCGCCGT
CAGTACCCTGCCGTAAGCGCCAACGTTCGGGCATCGACGCTTTTCGCTGT
TTTGCAAGCTTTTTCCTGTGATACAACGGTCGACTGTCGATGTTTTCCCC
AGGTAGCTCGCCGCCGCCGGCACCGAGAGTCCTCCGTTACCTTCGCGAGT
ACAGGCGGCATGTTGATGGCTCGGCGAGCGACTCGTGGCCCACGTCGCTG
CTGCCGGAGCTCCTCCGGATGGCCCAACAAGGCAACAGGGCCGACGCCAC
CCCGACCAGCAGCCAGGCGACACTAGGGGTACACATGATGGGCCTTATCG
GACACACTCTGGCCGGCGAAGAACGAGGTCGTTCAGACGTAGCAGCAGTG
GCGGAGACCGCCGCGTCAAACAACCCAAGAGAAACTCCGGTCCCTCCGTG
GCTGCTTTTGGCCATGGTGTCTGCGGCGCAGAACCGAGGGCGAGAGCGAG
GATCTCGGTGTGCAGCAGCGGCTGGCGGGATACACGGGGCCCCGAGGTCC
GGAGGGGGGGATCCAGCCACGGCCGCCACCGAGGAAGGGCTCAGAAACTC
GCTGGAGAGGCGCGTGTCCGAGTCGCTGCGCTCTCTGAGCAGCGTGCGGG
CCCTGCTGCAAGACCCCGCCGGCTCCGCCCGGCAGCACGTGGGGGACGGA
AGGATAGGTGCTTTGCGCTCCGCGGCGGATGACGAAGCGGCGATCAAGCT
CGCGGCCTTGACCGCGGACATGGACCCCGCGACCGCTCTCTTCGAGGGGA
CTCTTCGAGAGTGGTTGGCGAGTCGACGGAGGGGGAAGGGGGAAGGGGTT
TTGTTCAACGGTGGCCGGCGGCCCGCCGAAGGATCAGTTTTGAGGGGAGA
GCGGCGGCTGTCTGGTATAGGTTTGGGTCGGCCGGAGGCGACGGACGCGG
GAGAATCGCGCACCGTGCTTGACGACGCGATGGCGCTCGCGTTTAGGTGC
GAGGCTGCCGATGACAAGGAGGCGACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9680:2633..5359+

>mRNA_E_fasciculatus_S2_contig9680.17682.1 ID=mRNA_E_fasciculatus_S2_contig9680.17682.1|Name=mRNA_E_fasciculatus_S2_contig9680.17682.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2382bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9680:2633..5359+ (Ectocarpus fasciculatus EfasUO2)
CAGGTTGTGTGCAGCGAGTTTGTTCGCTGTGACCGCCGCTCGGGACCATC
CGCTACAAAACATGGCGGAGATGGATCAACCAACGGCCGCAACAACGGCC
TAGTCTACGCGTGTATCGAGGCCAGCGGCTTGCTACGCCTGTGGGAGTGG
GGGGGAGACGCGGGTGGCCTGTGGAGCTGGATGTATCTCAACAGCTGCAA
CATATGCGCCTGCCGGGAGGATCCGATAGGCTGCCGCGTGTTGATGGCCG
TGATAGTGCCCGATCCCGTCGACGGCGAGGGCAAGGGTAGTAGCAACAGG
CGGAACCGGCTGGTATGGGAACAGGAAGACAATGGGGAGGGCGCCGGGCT
TGGCCTGGCCTCCACTCCTTCCACCGACCCGCGCTCGTCTTGCAGAGTGT
GGTCTCGCAGGGTGTCCTTTGATTTGGCGGAGGGAAGCATAGGTGGCGGT
AATCTCGGCTCCTCCCACCAACAGCAGCAGCAGCAGCACGCTACCGAAGA
GGGCGCCGGGGCCGGGTTTGGAAGTGGTGGCGCCAGCAACAGGGCCATGG
GCACGAGATCGGAAATCTCGCTGGCCTTTTCGGCGTGCCTCTTGCCGAAA
GGGGTGGACGAGCTTCTGTGCAGCCGGCATGGAGTGTGGATGCCGACCGG
CCCGCGAGTATACTTGAACCACTTTCCCACGGGTCGCTTGCATTGTTTTG
TTATCCCAAGCCTCCGAGACAGTGGAGCCGGAAGGAGCGATGCCCGTGGC
ACTGCCCCGGAGGGCGGCGGGCTTGACTACCGTCGCGATGCCCATCGCGG
TGGAGATGCAGACGGGAGCGGCATCTTCACGGAGTCGGAAAGCGGCCCGG
GAATCGGAGAGTCGGCGCTGAGAGAAGGTGGCGGCAGAGGCGCAACAACT
TCTGACGATGAAACCACCGCCGACGACTTTGCGGAGAAGGCCTCCTCGCC
ACCTTCTCCGCGATGCCTGTTTGCCGTGCACGAGCCAACCGGGGATCTAA
TGCTGTATGATCACCACCCCTGCGCTACCGTGCGCGTGCTCTCTCTGCCG
CCGGGATCGGGCGGTCTCAAGCTGCGTGTGCAGTGCACGCTCGATATTCC
GCCGGTCCTGGAGTCCCCACCACGTTCTTTTTCCGTACGCTCGAACGTGG
CCGTATTTTGCGGCGGTGGGGTTTGCTCGATGTACGACCTTTGCACCGGA
TTTTTTCTGGGCACAGTGGACATCCCTCGTTGTCGTGCCTGTGCGGTAAG
TAAGCGCCGTGACAGGTCCAAGACAAGTGGTGCTGTCTCTTTGTCTCCGG
CTTTCTCCTGCTCGTGCGGGCGGCAACAGGGGCTAAGCGCGACTGAGCTG
TTTGATGGTCGATTAGCGGCTTCCACCAGCCCTAGATTGTGGGCGTCCGA
GACACGGGGGCATTTAACAGGGATCCTCACAGCAACGCAGGTGCTTCGAG
TCAAGCTTCCTAGGATGGAGGAATGCCTACGAACTATATTTGAACCTTCG
CGAAGAGGTAGCTCGCCGCCGCCGGCACCGAGAGTCCTCCGTTACCTTCG
CGAGTACAGGCGGCATGTTGATGGCTCGGCGAGCGACTCGTGGCCCACGT
CGCTGCTGCCGGAGCTCCTCCGGATGGCCCAACAAGGCAACAGGGCCGAC
GCCACCCCGACCAGCAGCCAGGCGACACTAGGGGTACACATGATGGGCCT
TATCGGACACACTCTGGCCGGCGAAGAACGAGGTCGTTCAGACGTAGCAG
CAGTGGCGGAGACCGCCGCGTCAAACAACCCAAGAGAAACTCCGGTCCCT
CCGTGGCTGCTTTTGGCCATGGTGTCTGCGGCGCAGAACCGAGGGCGAGA
GCGAGGATCTCGGTGTGCAGCAGCGGCTGGCGGGATACACGGGGCCCCGA
GGTCCGGAGGGGGGGATCCAGCCACGGCCGCCACCGAGGAAGGGCTCAGA
AACTCGCTGGAGAGGCGCGTGTCCGAGTCGCTGCGCTCTCTGAGCAGCGT
GCGGGCCCTGCTGCAAGACCCCGCCGGCTCCGCCCGGCAGCACGTGGGGG
ACGGAAGGATAGGTGCTTTGCGCTCCGCGGCGGATGACGAAGCGGCGATC
AAGCTCGCGGCCTTGACCGCGGACATGGACCCCGCGACCGCTCTCTTCGA
GGGGACTCTTCGAGAGTGGTTGGCGAGTCGACGGAGGGGGAAGGGGGAAG
GGGTTTTGTTCAACGGTGGCCGGCGGCCCGCCGAAGGATCAGTTTTGAGG
GGAGAGCGGCGGCTGTCTGGTATAGGTTTGGGTCGGCCGGAGGCGACGGA
CGCGGGAGAATCGCGCACCGTGCTTGACGACGCGATGGCGCTCGCGTTTA
GGTGCGAGGCTGCCGATGACAAGGAGGCGACG
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