mRNA_E_fasciculatus_S2_contig9672.17679.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9672.17679.1
Unique NamemRNA_E_fasciculatus_S2_contig9672.17679.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9672.17679.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L124_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 4.750e-5
Identity = 23/34 (67.65%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   28 RMEEAEEFHRRALAIREDKLGVDHPDVAHTLHNL 129
            RM++AE+F+RRALAIRE+++GVDHP+VA TL +L
Sbjct:   90 RMKDAEDFYRRALAIREEQVGVDHPEVARTLDDL 123
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9672.17679.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.750e-567.65protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9672contigE_fasciculatus_S2_contig9672:4..354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size351
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842612.9414027-UTR-E_fasciculatus_S2_contig9672:3..331696842612.9414027-UTR-E_fasciculatus_S2_contig9672:3..33Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9672 4..33 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842612.9542716-CDS-E_fasciculatus_S2_contig9672:33..3541696842612.9542716-CDS-E_fasciculatus_S2_contig9672:33..354Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9672 34..354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9672.17679.1prot_E_fasciculatus_S2_contig9672.17679.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9672 34..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9672.17679.1

>prot_E_fasciculatus_S2_contig9672.17679.1 ID=prot_E_fasciculatus_S2_contig9672.17679.1|Name=mRNA_E_fasciculatus_S2_contig9672.17679.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=107bp
MEEAEEFHRRALAIREDKLGVDHPDVAHTLHNLGVCAWKTGRTGKAEELH
RRELAIREEKLGEDHPEVADSLHWLAVNVGDAGRKEEAEKLFRRALAIRD
EKLGVDH
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mRNA from alignment at E_fasciculatus_S2_contig9672:4..354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9672.17679.1 ID=mRNA_E_fasciculatus_S2_contig9672.17679.1|Name=mRNA_E_fasciculatus_S2_contig9672.17679.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=351bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9672:4..354+ (Ectocarpus fasciculatus EfasUO2)
CTCGGTGTGTGCGCTTCCAAGGCAGGGAGGATGGAGGAAGCAGAGGAGTT
TCATCGACGAGCGCTTGCGATCCGCGAGGACAAGCTGGGCGTCGATCACC
CGGACGTGGCACACACGCTGCATAACCTCGGGGTGTGCGCCTGGAAAACA
GGCAGAACCGGTAAGGCCGAGGAGCTTCATCGACGAGAGCTCGCAATTCG
TGAGGAAAAGCTTGGCGAGGACCACCCGGAGGTAGCAGATAGCCTGCATT
GGCTAGCGGTCAACGTGGGCGACGCAGGCAGGAAGGAGGAGGCCGAGAAA
TTGTTTCGACGGGCGCTTGCAATCCGGGATGAAAAGCTGGGCGTCGATCA
T
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9672:4..354+

>mRNA_E_fasciculatus_S2_contig9672.17679.1 ID=mRNA_E_fasciculatus_S2_contig9672.17679.1|Name=mRNA_E_fasciculatus_S2_contig9672.17679.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9672:4..354+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGGAAGCAGAGGAGTTTCATCGACGAGCGCTTGCGATCCGCGAGGA
CAAGCTGGGCGTCGATCACCCGGACGTGGCACACACGCTGCATAACCTCG
GGGTGTGCGCCTGGAAAACAGGCAGAACCGGTAAGGCCGAGGAGCTTCAT
CGACGAGAGCTCGCAATTCGTGAGGAAAAGCTTGGCGAGGACCACCCGGA
GGTAGCAGATAGCCTGCATTGGCTAGCGGTCAACGTGGGCGACGCAGGCA
GGAAGGAGGAGGCCGAGAAATTGTTTCGACGGGCGCTTGCAATCCGGGAT
GAAAAGCTGGGCGTCGATCAT
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