mRNA_E_fasciculatus_S2_contig9631.17643.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9631.17643.1
Unique NamemRNA_E_fasciculatus_S2_contig9631.17643.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9631.17643.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN9_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.210e-46
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:   67 MAEGSNSPAEGYLDWAQEELGVVVHHPLRVSSTPGKEERGVFCEENIPAETIVVSVPWEALMTVDSAKGTPFEGL 291
            MAEGSNSPAEGYL+WAQEELGVVVHHPLRVSSTPGKEERGVFCEENIPAETIVVSVPWEALMTVDSAKGTPFEGL
Sbjct:    1 MAEGSNSPAEGYLEWAQEELGVVVHHPLRVSSTPGKEERGVFCEENIPAETIVVSVPWEALMTVDSAKGTPFEGL 75
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BLAST of mRNA_E_fasciculatus_S2_contig9631.17643.1 vs.
Match: SET (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFS9_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 1.210e-44
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:   67 MAEGSNSPAEGYLDWAQEELGVVVHHPLRVSSTPGKEERGVFCEENIPAETIVVSVPWEALMTVDSAKGTPFEGL 291
            MAEGSNSPAEGYLDWAQEELGVVVHHPLRVSSTPGKEERGVFCEENIPAETIVVSVPWEALMTVDSAKGTPFEGL
Sbjct:    1 MAEGSNSPAEGYLDWAQEELGVVVHHPLRVSSTPGKEERGVFCEENIPAETIVVSVPWEALMTVDSAKGTPFEGL 75
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9631.17643.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.210e-4698.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
SET1.210e-44100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9631contigE_fasciculatus_S2_contig9631:4076..5855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score158.7
Seed ortholog evalue1.1e-36
Seed eggNOG ortholog2880.D8LFS9
Preferred nameSETD4
Model size292
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K05662,ko:K19199
KEGG TC3.A.1.210
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,ko02010,map00310,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018026,GO:0018193,GO:0018205,GO:0019538,GO:0022613,GO:0031974,GO:0031981,GO:0032259,GO:0036211,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
EC2.1.1.43
Cds size225
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842609.213724-UTR-E_fasciculatus_S2_contig9631:4075..41411696842609.213724-UTR-E_fasciculatus_S2_contig9631:4075..4141Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9631 4076..4141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842609.224833-CDS-E_fasciculatus_S2_contig9631:4141..43181696842609.224833-CDS-E_fasciculatus_S2_contig9631:4141..4318Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9631 4142..4318 +
1696842609.2336283-CDS-E_fasciculatus_S2_contig9631:5807..58551696842609.2336283-CDS-E_fasciculatus_S2_contig9631:5807..5855Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9631 5808..5855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9631.17643.1prot_E_fasciculatus_S2_contig9631.17643.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9631 4142..5855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9631.17643.1

>prot_E_fasciculatus_S2_contig9631.17643.1 ID=prot_E_fasciculatus_S2_contig9631.17643.1|Name=mRNA_E_fasciculatus_S2_contig9631.17643.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=75bp
MAEGSNSPAEGYLDWAQEELGVVVHHPLRVSSTPGKEERGVFCEENIPAE
TIVVSVPWEALMTVDSAKGTPFEGL
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mRNA from alignment at E_fasciculatus_S2_contig9631:4076..5855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9631.17643.1 ID=mRNA_E_fasciculatus_S2_contig9631.17643.1|Name=mRNA_E_fasciculatus_S2_contig9631.17643.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1780bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9631:4076..5855+ (Ectocarpus fasciculatus EfasUO2)
CGGCAGCCGTCGCCGCCAAGAAGCACAAGCAAGCATCCATAAAGAACGAG
AATAAGCGACGACAGCATGGCAGAGGGCAGCAATTCGCCTGCGGAAGGCT
ACCTTGACTGGGCACAGGAGGAGCTCGGGGTAGTTGTCCACCACCCCTTG
CGAGTGTCCTCCACGCCCGGAAAGGAGGAGAGGGGCGTGTTCTGCGAGGA
GAACATCCCAGCGGAGACAATCGTTGTGTCCGTGCCGTGGGAGGTGGGTG
ACTACATGAGCCATTCAAATTTTCAAACACAAGAAGATACTTCAGCCGGA
GCGCGTGTTTGCCGCAGGTTGGCCGGCATTGGAGGGAGCAGAGAGGGTAT
CAACACACCAGTCCTAATCCTGTTTTTTCCATACTACTTTGTATACCGGT
GGAGATTAGGAGTCCGTTTGTCATTGGCAATTTGCAAACACGTGAATAAC
AACCGTCGTCATGTATGCACAGCAGTTTGTCCACCGAAGTCCCGCGGCGG
TACGCGTTGTGTTTGCGTGTGGTACGCAGGTCCCGTTATTGCGGTGCTAC
TCCATGGGCTTGACATGCAGAAACCTGCTTGCTTGAGAGATTATTTACGA
GGATGAGCCAGACCGCGTGGAAACAGCATCAAATATGATCCCCACCAACT
TCCATGCGGTTTGCAGTGCAGGAATGAAACCAGCAGCAGTGAGTGCGAGA
GAGCGGAGCGGCCCTGAGAGCGTCGAGGCCTGAGAGATGCTTAACCCCTG
CGGTGGTGTTGCTCGCAGTGTGTCGCGCCTTTTGAAGGGGTGGCACCGGA
AACACCTTACTGCAAACGTGTACACATGATGGAAGCGTCTCCCGCATGCA
CTTGTGAGGCGCAGCGATAGTTGTAGTTGCTGCGGCTCATTTGTGGCTTC
ACACACGTTGATTTTTAGCCAACCGTTGATGTGGAAATCAGGATATAGGT
ATCTTCCTAGGGTAGGGACGCACATGCGACCACTAAAAGGCCTGTAGACT
ACGAAAAATGTTCTACCGCTCCAAAAATCTTTACCGACAAAGGTCCACCG
AATACAGTGACCATTCCGGTGAATATCGGGGATGTGGAGATGCCCACGAG
GGCCCTCTCTCGCTGACTTCCACCTTCTTTTTTGAAACTAGCACGTCCCA
GTAACCTCGGCCCCGCTTGGCTATCCCTCGCCACATACCAAGAGAAATGT
ATACCTCCGCTGGTGAACGGTTTATCTGCGGAAAGAAAATATTCTCATTA
AGCTCTCGGGGAACCTTGACCAATCAGTTGGCGGTGGTCGTTGTGCTAGT
GAAACCTCCTGCTGCGTATCTTACGCAACATACGCGACGTTGAACGCGAG
AACACACACCCGGCGAAAATGAGTACAGGAGGAACACAGCGAGCGAGCGA
GCCCAGTTTCCCGCCAGCTGCTTTTGTTTGCTTTCGTGGCAGGTGTGGTG
AGGTTGAGGTAATCGGTTTTGTTGTTTGGAAAATCAGACGGCTGGAACAC
GTTGATTCGGTCACGCCAGCCTGTTCGTGTGGCCCCAGTATTTGCGTTAT
TTCAGGTTCGAAACCTTCACGCTCGCGCTCCGCGCACCATGCAAAGGAGC
GACTTTCACCTTCTTATCCACAACGAACCTCATGAATGTTATTTGTCGTC
AGTCCCTATTGTGGGACAATTGCCCGTCCAACCACCCCCCCTCCGTTTCT
CCACCGTCACCATGTCCGCGACGCACGCGCAGGCACTCATGACCGTAGAC
AGCGCCAAGGGCACGCCGTTCGAGGGCCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9631:4076..5855+

>mRNA_E_fasciculatus_S2_contig9631.17643.1 ID=mRNA_E_fasciculatus_S2_contig9631.17643.1|Name=mRNA_E_fasciculatus_S2_contig9631.17643.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=225bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9631:4076..5855+ (Ectocarpus fasciculatus EfasUO2)
ATGGCAGAGGGCAGCAATTCGCCTGCGGAAGGCTACCTTGACTGGGCACA
GGAGGAGCTCGGGGTAGTTGTCCACCACCCCTTGCGAGTGTCCTCCACGC
CCGGAAAGGAGGAGAGGGGCGTGTTCTGCGAGGAGAACATCCCAGCGGAG
ACAATCGTTGTGTCCGTGCCGTGGGAGGCACTCATGACCGTAGACAGCGC
CAAGGGCACGCCGTTCGAGGGCCTG
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