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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9630.17641.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP0_ECTSI) HSP 1 Score: 721 bits (1861), Expect = 2.500e-258 Identity = 374/460 (81.30%), Postives = 395/460 (85.87%), Query Frame = 1
Query: 163 EENAVESTPPTSSGKRRREPSFGGNSSSEGVGDPKARAPTGVKNGLVKNGLAFYRGAVSVPTFSEAERQHIESRLTFQRAYDSVSILSNGKPVDGGVDLALAPVVAGVIATMSGLVGVRPDCVHLTTRERGQLHTSHSDKMKFDMRGTVHLGADVLLEPPVDPARSTGDFVLSGGGLPQPLIMPMRSGDAYIATSKVLHAPLFHGIAPPDQASLSVVCSWRPGNGAFNPWRSQSRPLAESFPSLCGAKAVDGEEAFKGTTTDRVPSRSKTIKSRIRQSGDYTVGSSLFRAPPEEQPSAYHRLGKRRSPNGGACQEEEETLKL-GHLPPPNEFSGAQKKPSGKQQKPNSNPRGPGGTGCIEFDYGPYAISLGKHLRAQKNRKTGDIIISENPSEFFEWSVPGVNNGEGTLGTQPFDSHGDNARASYPCTKDGARIKTAPKLEKGNLYLMRKARESHQNAQG 1539
EENAVESTPPTSSGKRRREPSFGGNSSSEGVGDPKARAPTGV VKNGLAFYRGAVSVPTF+E ERQHIES L+FQRAYDSV ILS GKPVDGGVDLALAPVVAG IATM+ LVGVR DC HLTTRE+ QLHTSHSD+MKFD+RGTVHLGADVLL VDPARSTGDF+LSGG LPQPLIMPMRSGDAYIATS+VL+APLFHGI+PPDQASLSVVC+W PG GAFNPWRSQS PLAESFPSLCG KAVDGEEAFK TTTDRVP KTIKSRIRQSGD+T G SLFRAPPEEQ SAYHRL + G +C E E GH+ N G + SGKQQKPNS+ GPG G IEFDYGPYA SLGKHLRAQKN+KTGDIIISENPSEFFEWSVP VNNGE TLGTQPFDS+GDN RASYPCTKDGARIK APKLE+GN YLM+KARE HQNAQG
Sbjct: 12 EENAVESTPPTSSGKRRREPSFGGNSSSEGVGDPKARAPTGVPT-RVKNGLAFYRGAVSVPTFTEGERQHIESHLSFQRAYDSVDILSRGKPVDGGVDLALAPVVAGAIATMTDLVGVRSDCAHLTTREKEQLHTSHSDRMKFDVRGTVHLGADVLLHGQVDPARSTGDFILSGGDLPQPLIMPMRSGDAYIATSEVLYAPLFHGISPPDQASLSVVCTWSPGRGAFNPWRSQSHPLAESFPSLCGVKAVDGEEAFKVTTTDRVPP--KTIKSRIRQSGDFTDGVSLFRAPPEEQASAYHRLANSCNVAGCSCTESGEACSCDGHVHVKNASVGGAVQ-SGKQQKPNSHRGGPGAAGRIEFDYGPYATSLGKHLRAQKNKKTGDIIISENPSEFFEWSVPSVNNGERTLGTQPFDSNGDNKRASYPCTKDGARIKKAPKLERGNAYLMQKAREWHQNAQG 467
BLAST of mRNA_E_fasciculatus_S2_contig9630.17641.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC74_9PHAE) HSP 1 Score: 380 bits (976), Expect = 4.180e-123 Identity = 207/316 (65.51%), Postives = 235/316 (74.37%), Query Frame = 1
Query: 163 EENAVESTPPTSSGKRRREPSFGGNSSSEGVGDPKARAPTGVKNGLVKNGLAFYRGAVSVPTFSEAERQHIESRLTFQRAYDSVSILSNGKPVDGGVDLALAPVVAGVIATMSGLVGVRPDCVHLTTRERGQLHTSHSDKMKFDMRGTVHLGADVLLEPPVDPARSTGDFVLSGGGLPQPLIMPMRSGDAYIATSKVLHAPLFHGIAPPDQASLSVVCSWRPGNGAFNPWRSQSRPLAESFPSLCGAKAVDGEEAFKGTTTDRVPSRSKTIKSRIRQSGDYTVGSSLFRAPPEEQPSAYHRLGKRR-----SPNGG 1095
EEN TP SSGKR+REPSFGG S GVGDP AR T V VKNGLAF+RGAVSV TFSEAER+HIESRLTFQRAYDSV ILSNGKPVDGG+ L APV+A +I M+ LVGV PD VH+TTRE GQ+H SHSDKM+FD+R TVHLG DVLL+ VDPA+STGDFVLSG L Q L++ MRSGD YIAT VLHAP GI PP QASLS+V +WR F+P+R + RPLAE+F LCG AVDGEEAF+ T+++ VP + RIRQ GD+T G SLFR PPE Q SAYH+LGKR SPNGG
Sbjct: 214 EENYAHRTPAESSGKRKREPSFGGKSDKGGVGDPMARTQTTVPT-KVKNGLAFFRGAVSVQTFSEAERRHIESRLTFQRAYDSVDILSNGKPVDGGIGLEKAPVLACLIDKMTDLVGVPPDGVHMTTREGGQIHMSHSDKMQFDVRSTVHLGKDVLLDGQVDPAKSTGDFVLSGRDLSQSLLLQMRSGDPYIATDNVLHAPYLQGIRPPGQASLSLVSAWR---RVFHPFRPKFRPLAETFSLLCGVDAVDGEEAFRVTSSELVPPT--RVGERIRQPGDFTDGVSLFRPPPEAQASAYHKLGKRNKGKKGSPNGG 523
BLAST of mRNA_E_fasciculatus_S2_contig9630.17641.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP9_ECTSI) HSP 1 Score: 100 bits (249), Expect = 3.070e-19 Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 1177 SGKQQKPNSNPRGPGGTGCIEFDYGPYAISLGKHLRAQKNRKTGDIIISENPSEFFEWSVPGVNNGEGTLGTQPFDSHGDNARASYPCTKDGARIKTAPKLEKGNLYLMRKARESHQNAQG 1539
SG+Q+KPN NPRGPGG G EFDY P+ S+G H R K + +++S+N EFFE+S+ + NG LGT F S G +S P KDG R++T K+ + + YL KAR+ H QG
Sbjct: 291 SGEQEKPNPNPRGPGGAGVKEFDYRPHRRSIGFHYRGYK--ENDKLVMSDNTFEFFEYSIGNMENGAWILGTHHFSSQGKRL-SSDPYRKDGTRVQTEAKVMRNDGYLKNKARD-HGKEQG 407
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 0 |
| Model size | 1542 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Cds size | 1542 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842609.022196-CDS-E_fasciculatus_S2_contig9630:1354..1780 | 1696842609.022196-CDS-E_fasciculatus_S2_contig9630:1354..1780 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9630 1355..1780 - |
| 1696842609.0331008-CDS-E_fasciculatus_S2_contig9630:2356..2379 | 1696842609.0331008-CDS-E_fasciculatus_S2_contig9630:2356..2379 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9630 2357..2379 - |
| 1696842609.0497282-CDS-E_fasciculatus_S2_contig9630:3248..4074 | 1696842609.0497282-CDS-E_fasciculatus_S2_contig9630:3248..4074 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9630 3249..4074 - |
| 1696842609.0610845-CDS-E_fasciculatus_S2_contig9630:4225..4327 | 1696842609.0610845-CDS-E_fasciculatus_S2_contig9630:4225..4327 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9630 4226..4327 - |
| 1696842609.0718033-CDS-E_fasciculatus_S2_contig9630:4735..4843 | 1696842609.0718033-CDS-E_fasciculatus_S2_contig9630:4735..4843 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9630 4736..4843 - |
| 1696842609.083016-CDS-E_fasciculatus_S2_contig9630:5112..5169 | 1696842609.083016-CDS-E_fasciculatus_S2_contig9630:5112..5169 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9630 5113..5169 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9630.17641.1 >prot_E_fasciculatus_S2_contig9630.17641.1 ID=prot_E_fasciculatus_S2_contig9630.17641.1|Name=mRNA_E_fasciculatus_S2_contig9630.17641.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=514bp
RLSLLLPYSGPQASTRAMESCPVTPPRARGTSASGQRVLTPQPLNSPAPP RSPREENAVESTPPTSSGKRRREPSFGGNSSSEGVGDPKARAPTGVKNGL VKNGLAFYRGAVSVPTFSEAERQHIESRLTFQRAYDSVSILSNGKPVDGG VDLALAPVVAGVIATMSGLVGVRPDCVHLTTRERGQLHTSHSDKMKFDMR GTVHLGADVLLEPPVDPARSTGDFVLSGGGLPQPLIMPMRSGDAYIATSK VLHAPLFHGIAPPDQASLSVVCSWRPGNGAFNPWRSQSRPLAESFPSLCG AKAVDGEEAFKGTTTDRVPSRSKTIKSRIRQSGDYTVGSSLFRAPPEEQP SAYHRLGKRRSPNGGACQEEEETLKLGHLPPPNEFSGAQKKPSGKQQKPN SNPRGPGGTGCIEFDYGPYAISLGKHLRAQKNRKTGDIIISENPSEFFEW SVPGVNNGEGTLGTQPFDSHGDNARASYPCTKDGARIKTAPKLEKGNLYL MRKARESHQNAQG* back to topmRNA from alignment at E_fasciculatus_S2_contig9630:1355..5169- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig9630.17641.1 ID=mRNA_E_fasciculatus_S2_contig9630.17641.1|Name=mRNA_E_fasciculatus_S2_contig9630.17641.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3815bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9630:1355..5169- (Ectocarpus fasciculatus EfasUO2) AGGTTGTCACTACTTCTACCCTATTCCGGCCCACAAGCTTCTACGAGAGC
GATGGAGGTAAGCTTTCCGCTATGTATGCCGCATTTCACTCCGAATGTTT
TCACACTTACTTACTGCTGCTTCCTTCCACTATCTCGCAGATGGTAAGAG
ACACCGCCAGCAGAATATGCCCGAGAGGCTCAAAGGCTCGCTTTTAGCAC
CAAGCACAGGCCACTTGCCACCTCTCGTTTGTAGCTCAACAGATCTAACC
GGACGTGACAAGCGGTACATCCGCTGATTCTGTTCCCTCTCCACTGTGTC
ATTGTGTATTTTCTGTATTTTTTCAGAGCTGCCCGGTCACACCTCCTCGG
GCACGTGGCACATCGGCGTCAGGCCAGCGGGTTCTTACCCCGCAACCGCT
CAACAGCCCGGCACCCCCCCGTTCACCTCGAGAGGTAACACGTGTGAATC
CACCACCGCTTTCCTCAACCATACTGGTACTGATTTCCACGCAGACAGTT
GTAGGCTCTTGTCAGAGACCCTGTTCCCGAGGAAGTTGTTCCAGAGAACA
CAGCAGTAGTACCAAGCATCGATGAACGAATTCGCAAAACGAGCAGTAAC
GCCTCCAATACTCTCCATTTCACCCGGTGAACGCGGGCACGCAAGTCCCC
CCCGCCCCCCTGTTTCACTCACACACAAAGGCCCTCCCGTCTGACACGAT
CCTACCATGAACATCGCTTACAGCTTCAAATCTGCATTGGAGGTCAGTGC
ATGTTGCTATAGACTAAAGCGTGTATCTCAGTGCACGCTTGTCATCCACC
TATTTGTCGTCTGATCTATCCCGCTCTTCCATCCATGATCAGGAGAACGC
TGTCGAAAGTACACCCCCGACATCGTCTGGAAAGAGGAGGAGAGAGCCCA
GCTTCGGCGGCAACAGCAGCAGCGAAGGAGTAGGCGACCCGAAGGTAAGG
GGGATAGTCGGCCCACCTGTAGAGTGTGCGTGTGTGTGTTGCGTGTATTC
TCCACGATACACAAGGTTATCTGCCTGTCTTGTCTGGTTGAACTCTGGCG
GTTGTGTTATTCACCCATGGCCGCGTCTATTCGTACCTACCACAGGCGCG
GGCACCAACAGGGGTCAAGAACGGCCTGGTCAAGAACGGCCTGGCTTTCT
ACCGTGGGGCGGTGAGCGTGCCGACGTTCAGCGAGGCGGAGCGTCAACAC
ATTGAGTCCCGCCTGACGTTCCAGCGAGCGTACGACAGCGTGAGCATCCT
GTCCAACGGCAAGCCCGTCGACGGAGGGGTAGACCTTGCCCTGGCGCCTG
TCGTCGCTGGCGTGATCGCCACGATGAGCGGCCTGGTTGGCGTGCGACCG
GACTGCGTGCACCTGACTACACGGGAGAGAGGGCAACTTCACACGTCACA
CTCAGACAAGATGAAGTTCGATATGCGCGGCACGGTTCACCTTGGCGCGG
ACGTCCTCCTCGAACCGCCAGTAGACCCCGCGAGGTCCACCGGGGACTTC
GTCCTCAGCGGAGGCGGCCTGCCGCAGCCCCTTATCATGCCGATGCGGAG
CGGAGACGCGTACATCGCCACCTCCAAGGTCCTACACGCCCCCCTCTTCC
ACGGAATCGCCCCCCCGGACCAAGCAAGCCTTTCGGTAGTCTGCTCTTGG
CGTCCGGGAAATGGCGCCTTCAATCCCTGGCGGAGTCAGTCCCGCCCGCT
GGCCGAGAGCTTCCCCTCGCTCTGTGGAGCGAAGGCCGTCGACGGCGAGG
AAGCGTTCAAGGGTACGACTACGGACCGCGTACCGTCACGCTCGAAGACG
ATCAAGTCACGGATCCGGCAGTCGGGGGACTACACCGTCGGCAGCTCGCT
GTTCCGAGCTCCCCCCGAGGAGCAGCCATCCGCCTACCACCGGCTCGGCA
AGAGGAGGAGCCCGAACGGAGGTAAGTATGGTTGTTCTTCGATTTCACTC
GAGTAGAGTGACGAAGCGACGGCCAATTACGAATACACAATGCTGTCCTT
GAAGGAAGGCGTGCGATTTGACCCTTTGAATGAAACGTTGTGGCCTCGGG
GTCAAAGATCAGGAGCATGGGCGGTGATATCGTTGTATTAAGCGAACGGG
CTGTTGTTGTTGGGGTTGTATGTTGTTTGATAGAATTGAACGATGAATGA
ATGAATGAATGAATGAATGAATGAATTTTGTGCTTGTGCGTTGGCATGTC
TTATTTCCCATTCGTCCCATGTGCACCGACCTTCCCGGTGTGCCCCTCAG
TGAGTGTAGTCCCTGCTAAAACCGCCCCCTTTGGTCGAACTGTTGTTGGA
TTTGGTTCGTTTAAGGTCGATGCCCAATCATCGAAGACGTCTACGTGTTT
TGTTGCCTGGCGGTCGACGAATAATTTCCACTCCCACTTTGCCGGTGTGC
CATTCACCGGACGCAAACCATCTAATCACCGCTCCCTCTTTCTGATGCTT
CCAAGGCGTGCAACTGGTTCGTTGAATGAAATGCCGGTGTCGTTGTTGCT
GTTGTTGTTGTTGTTGTTATTGTTGTTGTTGTTGTCGTCGTCGTCGTCGT
CATTGTTGTTGTTGTTGCCGCCAAAGCGTGCTGTTTGACTTTTGGAATGA
AAATTTGACATGTTCGTTGCAGGCGTTGCCTCGGACAAGAAACAAACGTG
ACACTCTGAATGAACTATTTTTTTTTCACTCTCTGATTGAATCTTTGCTC
TCTTGTTCATCCCACCTCACCGTGCCAATGAATGGTGTCGCAGGGCGGAA
TGGCCTGAGCGCGGAGGAGTGGGAGAACCCCCCCACGGAGGAGCATGCCA
GGAAGAAGAAGAAGTGCTCAGAGGACAACAGCAGAGCGGGTGAGAAGGGC
GTTGCAGATCTAATATCAAGGTAGTGGTTGTTGTTGTTACGTCCTCTGAG
GCCAGGAGCTCAAGCTCGTCAAGACGGCCAGGCAGGGCCGCCCCCGTCCG
TTCTGTTCGATGCAGGCGTTTCTGTTTGTGTTGTTGTATTGCGTGGAAAT
TTTCTTCCTGAAACTAACCTTCTCCTCTCCCCGTGCCCGATTTGGGACTT
GTTACACCCTTAAGAGCGAGCAACTGGTGCATGGTTGGATTGAGCCTATT
CCCGCCGCCCGTCGTTTCCTTTGTGTTGTTTTGTTGTCACATCCTTTGCT
ACAGTTCCATTCCGACCCACCCCCGCCTTTCATGATATGATAGTTCACCC
GATGCCACCAACTCATGACCGCTCCCTTCTCAGTAGAATGTGGTGATACG
GCTGCGTGCGTGTGACCCGAATGAAATGTCCTTCACTCTTGATGTTCGCT
ACTACAGCCCTGGTTACATCCACAATGTACCGCTCCATGCGGCGCTATGG
TGTAGCCTGGGACTTCCCGTATTTCGTCTTGCGAAAAAGACGCTCAAACT
CGGCCACTTGCCTCCTCCGAATGAATTTTCAGGGGCGCAAAAGAAACCAT
CGGGAAAACAACAGAAACCCAACAGCAACCCGCGAGGCCCCGGCGGCACC
GGTTGTATCGAGTTTGACTACGGCCCGTACGCTATCTCCCTCGGCAAGCA
CCTCCGTGCTCAGAAGAACAGGAAGACGGGCGACATTATCATCTCGGAAA
ACCCGTCGGAGTTCTTCGAGTGGAGTGTCCCCGGCGTGAACAACGGGGAG
GGGACGTTGGGCACCCAGCCCTTCGACAGCCATGGCGACAACGCCAGAGC
ATCCTACCCGTGCACGAAGGACGGTGCCAGGATCAAGACGGCGCCCAAGT
TAGAGAAAGGCAACCTTTACCTGATGCGGAAGGCCAGGGAGTCGCACCAA
AATGCGCAGGGGTAG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig9630:1355..5169- >mRNA_E_fasciculatus_S2_contig9630.17641.1 ID=mRNA_E_fasciculatus_S2_contig9630.17641.1|Name=mRNA_E_fasciculatus_S2_contig9630.17641.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1542bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9630:1355..5169- (Ectocarpus fasciculatus EfasUO2) AGGTTGTCACTACTTCTACCCTATTCCGGCCCACAAGCTTCTACGAGAGC GATGGAGAGCTGCCCGGTCACACCTCCTCGGGCACGTGGCACATCGGCGT CAGGCCAGCGGGTTCTTACCCCGCAACCGCTCAACAGCCCGGCACCCCCC CGTTCACCTCGAGAGGAGAACGCTGTCGAAAGTACACCCCCGACATCGTC TGGAAAGAGGAGGAGAGAGCCCAGCTTCGGCGGCAACAGCAGCAGCGAAG GAGTAGGCGACCCGAAGGCGCGGGCACCAACAGGGGTCAAGAACGGCCTG GTCAAGAACGGCCTGGCTTTCTACCGTGGGGCGGTGAGCGTGCCGACGTT CAGCGAGGCGGAGCGTCAACACATTGAGTCCCGCCTGACGTTCCAGCGAG CGTACGACAGCGTGAGCATCCTGTCCAACGGCAAGCCCGTCGACGGAGGG GTAGACCTTGCCCTGGCGCCTGTCGTCGCTGGCGTGATCGCCACGATGAG CGGCCTGGTTGGCGTGCGACCGGACTGCGTGCACCTGACTACACGGGAGA GAGGGCAACTTCACACGTCACACTCAGACAAGATGAAGTTCGATATGCGC GGCACGGTTCACCTTGGCGCGGACGTCCTCCTCGAACCGCCAGTAGACCC CGCGAGGTCCACCGGGGACTTCGTCCTCAGCGGAGGCGGCCTGCCGCAGC CCCTTATCATGCCGATGCGGAGCGGAGACGCGTACATCGCCACCTCCAAG GTCCTACACGCCCCCCTCTTCCACGGAATCGCCCCCCCGGACCAAGCAAG CCTTTCGGTAGTCTGCTCTTGGCGTCCGGGAAATGGCGCCTTCAATCCCT GGCGGAGTCAGTCCCGCCCGCTGGCCGAGAGCTTCCCCTCGCTCTGTGGA GCGAAGGCCGTCGACGGCGAGGAAGCGTTCAAGGGTACGACTACGGACCG CGTACCGTCACGCTCGAAGACGATCAAGTCACGGATCCGGCAGTCGGGGG ACTACACCGTCGGCAGCTCGCTGTTCCGAGCTCCCCCCGAGGAGCAGCCA TCCGCCTACCACCGGCTCGGCAAGAGGAGGAGCCCGAACGGAGGAGCATG CCAGGAAGAAGAAGAAACGCTCAAACTCGGCCACTTGCCTCCTCCGAATG AATTTTCAGGGGCGCAAAAGAAACCATCGGGAAAACAACAGAAACCCAAC AGCAACCCGCGAGGCCCCGGCGGCACCGGTTGTATCGAGTTTGACTACGG CCCGTACGCTATCTCCCTCGGCAAGCACCTCCGTGCTCAGAAGAACAGGA AGACGGGCGACATTATCATCTCGGAAAACCCGTCGGAGTTCTTCGAGTGG AGTGTCCCCGGCGTGAACAACGGGGAGGGGACGTTGGGCACCCAGCCCTT CGACAGCCATGGCGACAACGCCAGAGCATCCTACCCGTGCACGAAGGACG GTGCCAGGATCAAGACGGCGCCCAAGTTAGAGAAAGGCAACCTTTACCTG ATGCGGAAGGCCAGGGAGTCGCACCAAAATGCGCAGGGGTAG back to top
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