mRNA_E_fasciculatus_S2_contig9622.17637.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9622.17637.1
Unique NamemRNA_E_fasciculatus_S2_contig9622.17637.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9622.17637.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK46_ECTSI)

HSP 1 Score: 687 bits (1774), Expect = 1.940e-246
Identity = 325/354 (91.81%), Postives = 335/354 (94.63%), Query Frame = 1 
Query:    1 DVAWVRPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFTAVKTFYACDGRSWPPPSSWWQPECTTIGFEESVLFRHLHASEIPYRFYPLFDFIITRGVTGGGCKLGFIVYSEVCSLLGLWNALQPPFSRDDCLVALAEYTDLRCRTLFPARGMEDERRVDAILDPEPRAWEALLDSSALLEPIPAVAAPGPLGRAKEGDSSDGPRYTSVAKAEDVDSARLKLVLLRDALRAPSPLEPHYDMALREEVKERRLSDRWEGWKAHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLIRELVQSVKCFVSKLIGETPVGDGDSNQSPCDGVRSLDLVMIDVSLHTEEV 1062
            DVAW RPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFF+AVKTFYACDGRSWPPPSSWWQPEC TIGFEESVLFRHLHASEIPYRFYPLFDFIITRGV GG CKLGFIVYSEVCSLLGLWNALQPPFSRD CL ALAEY+DLRCRTLFPARGMEDERRVDAILDPEPRAWEALLDSS LLEPIPAVAAPGPLGRA EGDSSD   YTSVAKAEDVDSARLKLVLLRDAL+APSPLEPHY+MALREE KER L DRW GWK HPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPL+RELVQSVKCFVS++IGET VG GD+NQS C+GVRSLDLVMIDVSLHTEE+
Sbjct:  158 DVAWARPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFSAVKTFYACDGRSWPPPSSWWQPECATIGFEESVLFRHLHASEIPYRFYPLFDFIITRGVIGGVCKLGFIVYSEVCSLLGLWNALQPPFSRDHCLEALAEYSDLRCRTLFPARGMEDERRVDAILDPEPRAWEALLDSSPLLEPIPAVAAPGPLGRATEGDSSDASIYTSVAKAEDVDSARLKLVLLRDALQAPSPLEPHYEMALREEAKERSLLDRWGGWKTHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLVRELVQSVKCFVSRIIGETQVGGGDTNQSSCNGVRSLDLVMIDVSLHTEEL 511
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9622.17637.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E2_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.040e-45
Identity = 141/456 (30.92%), Postives = 191/456 (41.89%), Query Frame = 1 
Query:    1 DVAWVRPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFTAVKTFYACD---GRSWPPPSSWWQPECTTIG-----------------------------------------------------FEESVLFRHLHASEIPYRFYPLFDFIIT-------------RGVTGGGCKLGFIVYSEVCSLLGLWNALQPPFSRDDCLVALAEYTDLRCRTLFPAR----GMEDERRVDAILDPEPRAWEALLDSSALLEPIPAVAAPGPLGRAKEGDSSDGPRYTSVAKAEDVDSARLKLVLLRDAL----------------RAPSPLEPHYDMALREEVKER--------RLSDRWEGWKAHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLIRELVQSVKCFVSKLI-GETPVG----DGDSNQSPCDGVRSLDLVMIDVSLHTEEV 1062
            DVAW + LP  R+FSR  VWF    WPMS +FALVPR FSDRFF+AV+ F+ACD   G SWPP  +WWQP+C   G                                                     F ES+++RHLHAS +PYR YP+F++                 G T  GC+     Y   C LLG        ++ ++C  AL+E++ L CRT         G + ER  +  LDP+   W     SS  + P       G +  A E D           + ED+  A   L  LRDA+                 A     P  + + R   KE         + S      + +  W +HS  GC L E  +PG +PH++ + +     +REL  + KC   + I G T       D   + + C   RSL+LVMIDVSLH+ EV
Sbjct:  242 DVAWKKSLPSFRAFSRDVVWFAAKSWPMSTNFALVPRAFSDRFFSAVEAFHACDDGNGPSWPPGEAWWQPDCGEHGQENGNSSGNVHSGGNLHHSPRSGPAGGGGGFELRGSDDGSIFHDNRGGGRGEGFGESIVYRHLHASGVPYRPYPMFEYYTVPPYVRDGDADGDAAGDTRSGCETSTPDYFTGCVLLGTVGLFSQAYTSEECATALSEWSSLHCRTSTHLEATGPGHQTERGSEN-LDPDLTTWPR---SSVGVYPDETETDNGDVLGAAEADR---------VQEEDLRRAWFNLAALRDAVIVAADDGSEEVMHGSSNAGEEDTPSGETSRRNLGKEDGGDHDAAPKPSGSSPTRQTNRSWSVHSQGGCRLNE--YPGRAPHIIRHSSTDSHRMRELALATKCLAHRFIEGATAWSSVNEDFGFDATVCASSRSLELVMIDVSLHSAEV 682
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9622.17637.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ6_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.960e-40
Identity = 123/415 (29.64%), Postives = 167/415 (40.24%), Query Frame = 1 
Query:    1 DVAWVRPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFTAVKTFYACD---GRSWPPPSSWWQPECTTIG-----------------------------------------------------FEESVLFRHLHASEIPYRFYPLFDF------IITRGVTGG-------GCKLGFIVYSEVCSLLGLWNALQPPFSRDDCLVALAEYTDLRCRTLFPARGMEDERRVDAI---LDPEPRAWEALLDSSALLEPIPAVAAPGPLGRAKEGDSSDGPRYTSVAKAEDVDSARLKLVLLRDA--LRAPSPLEP---------HYDMALREEVKERRLSDRWEGWKAHPL-------------WWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLIRELVQSVKCFVSKLI 957
            DVAW   +P LR+FSR  VWF    WPMS +FALVPR FSDRFF+AV+ F+ACD   G SWPP  +WWQP+C   G                                                     F ES+++RHLHAS +PYR YP+F++      +    V GG       GC+     Y   C LLG      P ++ + C  AL+E++ L CR           R+ +     L+P  +AW           P  +V       +   GD   G       + ED+  A   LV LRDA  L A    E            D  +RE  +     D      A P              W +HS  GC L E  +PG +PH++ + +     +REL  + KC   + +
Sbjct:  241 DVAWKNSVPSLRAFSRDVVWFAAKSWPMSTNFALVPRAFSDRFFSAVEAFHACDDGNGPSWPPGEAWWQPDCGEDGQENENGSGSVHSGGNLHHSPRGGPAGGGGDFDLRDWDDGSIFHDNRGGSRGEGFGESIVYRHLHASGVPYRPYPMFEYYAVPPYVRDGDVDGGAARDTRSGCEASTSDYLTGCVLLGTVGLFSPAYTSEACATALSEWSSLHCRASTQPEATSTGRQTERASKNLNPYLKAW-----------PRSSVGVSSGEAKTHRGDVF-GTAEEDRVQEEDLKRAWSNLVALRDAVILAADDDSEEATHGSSNAGEDDTPIREASRRHLGKDDGGDHDAAPKPSNSSPTRQTNRSWSVHSQWGCRLNE--YPGRAPHIIRHSSTDSHRMRELALATKCLAHRFM 641
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9622.17637.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.940e-24691.81protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.040e-4530.92protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.960e-4029.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9622contigE_fasciculatus_S2_contig9622:3319..5862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score182.6
Seed ortholog evalue3.3e-43
Seed eggNOG ortholog2880.D7G5E2
Model size1062
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2CY2I@1,2S1H1@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_005860.1
Cds size1062
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.8126051-CDS-E_fasciculatus_S2_contig9622:3318..33671696842608.8126051-CDS-E_fasciculatus_S2_contig9622:3318..3367Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9622 3319..3367 -
1696842608.8295255-CDS-E_fasciculatus_S2_contig9622:4149..43131696842608.8295255-CDS-E_fasciculatus_S2_contig9622:4149..4313Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9622 4150..4313 -
1696842608.8418167-CDS-E_fasciculatus_S2_contig9622:4582..50271696842608.8418167-CDS-E_fasciculatus_S2_contig9622:4582..5027Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9622 4583..5027 -
1696842608.854575-CDS-E_fasciculatus_S2_contig9622:5314..56411696842608.854575-CDS-E_fasciculatus_S2_contig9622:5314..5641Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9622 5315..5641 -
1696842608.8639302-CDS-E_fasciculatus_S2_contig9622:5785..58621696842608.8639302-CDS-E_fasciculatus_S2_contig9622:5785..5862Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9622 5786..5862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9622.17637.1prot_E_fasciculatus_S2_contig9622.17637.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9622 3319..5862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9622.17637.1

>prot_E_fasciculatus_S2_contig9622.17637.1 ID=prot_E_fasciculatus_S2_contig9622.17637.1|Name=mRNA_E_fasciculatus_S2_contig9622.17637.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=354bp
DVAWVRPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFTAVKTF
YACDGRSWPPPSSWWQPECTTIGFEESVLFRHLHASEIPYRFYPLFDFII
TRGVTGGGCKLGFIVYSEVCSLLGLWNALQPPFSRDDCLVALAEYTDLRC
RTLFPARGMEDERRVDAILDPEPRAWEALLDSSALLEPIPAVAAPGPLGR
AKEGDSSDGPRYTSVAKAEDVDSARLKLVLLRDALRAPSPLEPHYDMALR
EEVKERRLSDRWEGWKAHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMG
EPLIRELVQSVKCFVSKLIGETPVGDGDSNQSPCDGVRSLDLVMIDVSLH
TEEV
back to top

mRNA from alignment at E_fasciculatus_S2_contig9622:3319..5862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9622.17637.1 ID=mRNA_E_fasciculatus_S2_contig9622.17637.1|Name=mRNA_E_fasciculatus_S2_contig9622.17637.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2544bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9622:3319..5862- (Ectocarpus fasciculatus EfasUO2)
GACGTGGCCTGGGTCCGCCCCCTGCCGCCTCTTCGGTCGTTTTCTCGGCA
AGCTGTGTGGTTTGGCCGTCACTACTGGTGAGCATCCCCGACATATTTCC
GACATGCCTATACTGCTGGCTGAATAGTATATTTTTAATCTGCAAGAAAC
CAGAAAATACGGCAGACGCGCCCGCAAACCCCGAAATGTCCCGGTTCACC
CCTCCTCGTGAAAATTCCCAGGCCGATGTCGGACCACTTCGCCCTCGTGC
CTCGAAAGTTTTCCGATCGTTTCTTCACGGCGGTAAAGACGTTTTACGCC
TGTGATGGGCGTTCGTGGCCGCCACCGTCGTCGTGGTGGCAGCCTGAGTG
TACCACCATCGGTTTCGAAGAGAGTGTGCTCTTCAGACACCTCCACGCCT
CCGAAATTCCGTATCGGTTTTATCCTCTGTTCGACTTCATCATCACGCGG
GGGGTGACCGGTGGCGGGTGCAAGCTTGGATTCATCGTGTACTCCGAAGT
GTGCAGCCTCTTGGGCTTGTGGAACGCTCTTCAGCCGCCTTTCTCCCGGT
GAGAGGTCCATCCGGTCTAAACTGCGGTACCAATGTGCCACGCGTCCCGT
TGGAAATGAGTGAAGCTGTTGTCTGGGCGGATTGACCACACAAAAGTAAA
ACCAGTCGTTCTTTCCTTGCTGCCCCGTTTAAACGCTTTCTCCTATCCTG
CTCTTTCGATGTCGTAAGAGTATGCAGCCTTTGCCACGGAATCTACGACT
CCGGTCTGCAAATAATCTCTAATCCACACAGACATTCTCGTGCGGGCTTG
TGGGTTGCCCTCCTGCGCCAAACCCTTCGAAACAGAGATGATTGTCTGGT
GGCGCTGGCGGAATATACGGATCTTCGATGTCGGACGCTGTTTCCCGCCC
GAGGCATGGAAGATGAACGAAGAGTGGACGCAATCTTAGACCCAGAGCCT
CGAGCATGGGAAGCACTACTAGACTCGAGCGCTTTACTGGAGCCGATTCC
CGCAGTAGCAGCGCCAGGGCCTTTGGGTCGGGCAAAGGAAGGAGACTCCA
GCGATGGTCCCAGATACACGAGTGTTGCGAAGGCTGAAGACGTCGATAGC
GCACGCCTAAAGCTGGTACTCCTGAGAGATGCACTACGGGCTCCTTCACC
CCTTGAACCCCATTATGATATGGCGCTTCGGGAAGAAGTGAAGGAGCGCC
GGCTGTCGGATCGTTGGGAAGGATGGAAAGCACATCCCCTATGGTGGATT
CACTCCATCATGGGATGCCCTCTTGCCGAGGTGACGAGAACTTTGGACAT
ACATGTGGTCGCTCATGCTGAACCCGCAAAGAGGGTACTGTTTTTGTCCG
TGGTCTTCTTAACCGGTTTGCAAGGGTTCGCTTTGAGCCCGTCCACGCCA
GTTGTTCACTACATTTACCCTGATCCTACTTGGTGCGAACGTTCACTTCC
GTTTGCCGGGGTAGCACGTGATATTCGAGGTGTTAAACGTACCCTGGAAA
CGGGTACGGCATGCTCCTTGTGTTTCTTGTTTTCTCCGTACCTCGGCAGC
CTCAGCATCCGGGTCCTTCGCCGCACGTTGTGCTGTACTACACGATGGGA
GAGCCCCTGATAAGGGAGTTGGTGCAGTCAGTCAAGTGCTTCGTATCCAA
GTTAATCGGCGAAACTCCGGTTGGAGACGGAGACTCCAACCAGAGTCCAT
GCGATGGTGTCAGGTGAGACAGAAGCACAACGTTTGCCCCTATCCGAACG
CCCAAACTGTGACTTTCGTCCTTCGGTACCATTCCACGGATAAGATCCTT
GCAAGACATACAGCAGCGTTGCATACTCCATTTTTTGTAGGAAGAGGTGT
GGAATTACAACCTCGTTTGCAACAGTCGATTGTTCCTGTGGCCATCTCGA
TGTTGCTGTTGTCAAAACTCAGGCAGGAAATATTGCGGTACCAAAAATCA
ACACTGAATGGCTTCAGTTCAAAAGACAAGGTGCCCTCTCTCTCGAAACA
CTATTTAATAAGAGCAGCTGGAGGTATTCAGCGAGAACCGTGCGGAAGGA
AGGTACATTTTCTGACTCAATCCAATATGCAAGTATGAATCGTGAAGCAT
TGCGCGCCACAGGGCATATCTAGAATGTCGTTTCGACCCAACGGCACGAA
GGGATCGGTCGTTGGGAGGTATAGAGCTTACGCTGCACTAAGATGTGCCG
ATGGTACATACTCCGTAGTATGGGTTGGTTCGTCTATGTCCGTCGTTGAG
AATCATAGCCAAAGCAATCAGGCGAGCCTTTTTCTCTGTCTCGAACGTTC
TCAAGCGCTTCATTACCACATCATCCCTCTACAATATGCGGTACTTCCTC
ATTGGCAAACTTTCCTCCCCTATATTCTGCCTACCTCTGTCCACTGGCCT
CTTCGACCCATTCCGTGGTTGCCCCTAATCCATTTCTCGACTGGGCCACG
TTCAACTTCAAATGGCAATCTGGGGCGGCGCCATAATGTCTTCAGGTCGT
TGGACCTCGTGATGATTGACGTTTCTCTACACACGGAAGAGGTG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9622:3319..5862-

>mRNA_E_fasciculatus_S2_contig9622.17637.1 ID=mRNA_E_fasciculatus_S2_contig9622.17637.1|Name=mRNA_E_fasciculatus_S2_contig9622.17637.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1062bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9622:3319..5862- (Ectocarpus fasciculatus EfasUO2)
GACGTGGCCTGGGTCCGCCCCCTGCCGCCTCTTCGGTCGTTTTCTCGGCA
AGCTGTGTGGTTTGGCCGTCACTACTGGCCGATGTCGGACCACTTCGCCC
TCGTGCCTCGAAAGTTTTCCGATCGTTTCTTCACGGCGGTAAAGACGTTT
TACGCCTGTGATGGGCGTTCGTGGCCGCCACCGTCGTCGTGGTGGCAGCC
TGAGTGTACCACCATCGGTTTCGAAGAGAGTGTGCTCTTCAGACACCTCC
ACGCCTCCGAAATTCCGTATCGGTTTTATCCTCTGTTCGACTTCATCATC
ACGCGGGGGGTGACCGGTGGCGGGTGCAAGCTTGGATTCATCGTGTACTC
CGAAGTGTGCAGCCTCTTGGGCTTGTGGAACGCTCTTCAGCCGCCTTTCT
CCCGAGATGATTGTCTGGTGGCGCTGGCGGAATATACGGATCTTCGATGT
CGGACGCTGTTTCCCGCCCGAGGCATGGAAGATGAACGAAGAGTGGACGC
AATCTTAGACCCAGAGCCTCGAGCATGGGAAGCACTACTAGACTCGAGCG
CTTTACTGGAGCCGATTCCCGCAGTAGCAGCGCCAGGGCCTTTGGGTCGG
GCAAAGGAAGGAGACTCCAGCGATGGTCCCAGATACACGAGTGTTGCGAA
GGCTGAAGACGTCGATAGCGCACGCCTAAAGCTGGTACTCCTGAGAGATG
CACTACGGGCTCCTTCACCCCTTGAACCCCATTATGATATGGCGCTTCGG
GAAGAAGTGAAGGAGCGCCGGCTGTCGGATCGTTGGGAAGGATGGAAAGC
ACATCCCCTATGGTGGATTCACTCCATCATGGGATGCCCTCTTGCCGAGC
CTCAGCATCCGGGTCCTTCGCCGCACGTTGTGCTGTACTACACGATGGGA
GAGCCCCTGATAAGGGAGTTGGTGCAGTCAGTCAAGTGCTTCGTATCCAA
GTTAATCGGCGAAACTCCGGTTGGAGACGGAGACTCCAACCAGAGTCCAT
GCGATGGTGTCAGGTCGTTGGACCTCGTGATGATTGACGTTTCTCTACAC
ACGGAAGAGGTG
back to top