mRNA_E_fasciculatus_S2_contig962.17636.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig962.17636.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI) HSP 1 Score: 322 bits (826), Expect = 1.600e-101 Identity = 155/160 (96.88%), Postives = 157/160 (98.12%), Query Frame = 1
Query: 1 VGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQVFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHSKERY 480
VGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQ FDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYN+ ER+
Sbjct: 151 VGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNNDHERH 310
BLAST of mRNA_E_fasciculatus_S2_contig962.17636.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA) HSP 1 Score: 232 bits (591), Expect = 2.040e-68 Identity = 113/164 (68.90%), Postives = 131/164 (79.88%), Query Frame = 1
Query: 1 VGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGN--FQVFDLDDVDAAFARFKTLKFSQHLTFS--GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHSKERY 480
VG VTILLDCGWDI FD +LL PL VV R+DLVLISH DLEHLGGLPYA GKLG++A V+ATLP KMGQM VYDA+ R+ E N F+ F LDD DAAF RF+ LK+SQHL FS GRGAGVTITPYAAG +IG ++WR+ WQT+DNDIVYA +YNH +E +
Sbjct: 73 VGDVTILLDCGWDIDFDESLLAPLASVVSRVDLVLISHADLEHLGGLPYAVGKLGLKAPVFATLPTLKMGQMTVYDAHQMRSLEANGTFKAFTLDDADAAFERFQPLKYSQHLRFSEGGRGAGVTITPYAAGHIIGGSLWRICWQTDDNDIVYAVSYNHRREEH 236
BLAST of mRNA_E_fasciculatus_S2_contig962.17636.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L931_9EUKA) HSP 1 Score: 192 bits (488), Expect = 1.840e-57 Identity = 90/155 (58.06%), Postives = 116/155 (74.84%), Query Frame = 1
Query: 16 ILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQVFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHSKERY 480
ILLDCGW+ +D LL+PL+ VV +I+ VLISHPDL HLG LPYA GKLG++AK+ T+PV+KMGQM +YDAY SR + F VF+LDDVDAAF F LK+SQ T SG+G + ITPYAAG +IG +W++ +T++ I+YA YNH KER+
Sbjct: 30 ILLDCGWNDDYDVQLLKPLKRVVGKINAVLISHPDLHHLGALPYAVGKLGLKAKIIGTIPVYKMGQMFMYDAYQSRQNSEEFTVFNLDDVDAAFDNFVQLKYSQRYTLSGKGIKLEITPYAAGHLIGGTIWKIKRETDE--IIYAVDYNHKKERH 182
BLAST of mRNA_E_fasciculatus_S2_contig962.17636.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 n=2 Tax=Phytophthora TaxID=4783 RepID=D0P072_PHYIT) HSP 1 Score: 186 bits (471), Expect = 2.020e-56 Identity = 89/166 (53.61%), Postives = 117/166 (70.48%), Query Frame = 1
Query: 1 VGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRT-HEGNFQVFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHSKERYFHRLL 495
V V ILLDCGW +D LL+PL+ VV RIDLVL+SH DL H+G LPYA GKLG+ A VY TLPV +MGQ+A+YDA+ ++T H+ +F +F LDDVD F RFK LK+S+ LT + G G+ ITP+ AG +IG A+WR+ +T+D I+YA YNH E + +
Sbjct: 25 VDEVCILLDCGWTDAYDVELLKPLQRVVDRIDLVLVSHLDLAHMGALPYAMGKLGLSAPVYGTLPVHRMGQIALYDAFQAKTKHDSDFSLFSLDDVDLVFERFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGALWRIMKETDD--IIYAVDYNHRSEHVLQKTI 188
BLAST of mRNA_E_fasciculatus_S2_contig962.17636.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHI7_GALSU) HSP 1 Score: 198 bits (503), Expect = 2.260e-56 Identity = 93/155 (60.00%), Postives = 116/155 (74.84%), Query Frame = 1
Query: 16 ILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQVFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHSKERY 480
ILLDCGW+ F+ LLEPLR + R+D VLISHPDL HLG LPYA KLG+RA YATLPVW+MGQ+ +YDA+ SR + +FQVFDLDDVD+AF F LK+ Q + FS RG G+TITP+ AG MIG VW++ Q+E +IVYA +NH +ER+
Sbjct: 31 ILLDCGWNDRFEETLLEPLRRIAPRVDAVLISHPDLFHLGALPYAVAKLGLRAPTYATLPVWRMGQLFMYDAHQSRAMQEDFQVFDLDDVDSAFENFIQLKYQQIVNFSERGKGITITPHPAGHMIGGTVWKI--QSETEEIVYANDFNHKRERH 183
BLAST of mRNA_E_fasciculatus_S2_contig962.17636.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YIS9_9STRA) HSP 1 Score: 187 bits (474), Expect = 1.740e-55 Identity = 89/166 (53.61%), Postives = 117/166 (70.48%), Query Frame = 1
Query: 1 VGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRT-HEGNFQVFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHSKERYFHRLL 495
V V ILLDCGW +D LL+PL+ VV RIDLVL+SH DL H+G LPYA GKLG+ A VY TLPV +MGQ+A+YDA+ ++T H+ +F +F LDDVD F RFK LK+S+ LT + G G+ ITP+ AG +IG A+WR+ +T+D I+YA YNH E + +
Sbjct: 25 VDEVCILLDCGWTDEYDVELLKPLQRVVDRIDLVLVSHLDLAHMGALPYAMGKLGLNAPVYGTLPVHRMGQIALYDAFQAKTKHDSDFSLFSLDDVDLVFERFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGALWRIMKETDD--IIYAVDYNHRSEHVLQKTI 188
BLAST of mRNA_E_fasciculatus_S2_contig962.17636.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FDL7_MICCC) HSP 1 Score: 194 bits (493), Expect = 1.070e-54 Identity = 91/158 (57.59%), Postives = 116/158 (73.42%), Query Frame = 1
Query: 7 GVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQVFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHSKERY 480
G ILLDCGW+ FD LLEPL +V +D VLISHPD EHLG LPYAFGKLGMR KVYATLPV KMG M +YD ++SR +F+VF LDD+D AF+ F ++++Q G GAG+TITPYAAG M+G A+W+V +T+D +VYA +NH +E++
Sbjct: 32 GFKILLDCGWNDSFDVNLLEPLAKVAAEVDAVLISHPDTEHLGALPYAFGKLGMRCKVYATLPVHKMGLMFMYDHFLSRNANEDFRVFTLDDIDTAFSAFVPVRYAQRSALVGHGAGITITPYAAGHMLGGALWKVHKETDD--VVYAVNFNHRREKH 187
BLAST of mRNA_E_fasciculatus_S2_contig962.17636.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYM6_9EUKA) HSP 1 Score: 192 bits (488), Expect = 3.200e-54 Identity = 90/155 (58.06%), Postives = 116/155 (74.84%), Query Frame = 1
Query: 16 ILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQVFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHSKERY 480
ILLDCGW+ +D LL+PL+ VV +I+ VLISHPDL HLG LPYA GKLG++AK+ T+PV+KMGQM +YDAY SR + F VF+LDDVDAAF F LK+SQ T SG+G + ITPYAAG +IG +W++ +T++ I+YA YNH KER+
Sbjct: 30 ILLDCGWNDDYDVQLLKPLKRVVGKINAVLISHPDLHHLGALPYAVGKLGLKAKIIGTIPVYKMGQMFMYDAYQSRQNSEEFTVFNLDDVDAAFDNFVQLKYSQRYTLSGKGIKLEITPYAAGHLIGGTIWKIKRETDE--IIYAVDYNHKKERH 182
BLAST of mRNA_E_fasciculatus_S2_contig962.17636.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHC0_GLOUD) HSP 1 Score: 188 bits (477), Expect = 1.090e-52 Identity = 88/166 (53.01%), Postives = 119/166 (71.69%), Query Frame = 1
Query: 1 VGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTH-EGNFQVFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHSKERYFHRLL 495
+ V ILLDCGW +DT LL+PL+ V+ RIDLVLISH DL H+G LPYA GKLG++A +Y TLPV +MGQ+A+YDAY ++T +G+F +F LDDVDA F FK LK+S+ LT + G G+ ITP+ AG +IG ++WR+ +T+D I+YA YNH E + +
Sbjct: 25 IDDVCILLDCGWTDQYDTELLKPLQRVIDRIDLVLISHLDLAHMGALPYAIGKLGLKAPIYGTLPVHRMGQIALYDAYQAKTKSDGDFALFTLDDVDAVFENFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGSLWRIEKETDD--IIYAVDYNHRSEHVLQKTI 188
BLAST of mRNA_E_fasciculatus_S2_contig962.17636.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 n=28 Tax=Peronosporaceae TaxID=4777 RepID=H3GZX6_PHYRM) HSP 1 Score: 187 bits (476), Expect = 1.340e-52 Identity = 89/166 (53.61%), Postives = 117/166 (70.48%), Query Frame = 1
Query: 1 VGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRT-HEGNFQVFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHSKERYFHRLL 495
V V ILLDCGW +D LL+PL+ VV R+DLVL+SH DL H+G LPYA GKLG+ A VY TLPV +MGQ+A+YDA+ ++T HE +F +F LDDVD F RFK LK+S+ LT + G G+ ITP+ AG +IG A+WR+ +T+D I+YA YNH E + +
Sbjct: 25 VDEVCILLDCGWTDEYDVELLKPLQRVVDRVDLVLVSHLDLAHMGALPYAMGKLGLNAPVYGTLPVHRMGQIALYDAFQAKTKHESDFSLFSLDDVDLVFERFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGALWRIMKETDD--IIYAVDYNHRSEHVLQKTI 188 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig962.17636.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig962.17636.1 >prot_E_fasciculatus_S2_contig962.17636.1 ID=prot_E_fasciculatus_S2_contig962.17636.1|Name=mRNA_E_fasciculatus_S2_contig962.17636.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=176bp VGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAback to top mRNA from alignment at E_fasciculatus_S2_contig962:23646..24984+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig962.17636.1 ID=mRNA_E_fasciculatus_S2_contig962.17636.1|Name=mRNA_E_fasciculatus_S2_contig962.17636.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1339bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig962:23646..24984+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig962:23646..24984+ >mRNA_E_fasciculatus_S2_contig962.17636.1 ID=mRNA_E_fasciculatus_S2_contig962.17636.1|Name=mRNA_E_fasciculatus_S2_contig962.17636.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=528bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig962:23646..24984+ (Ectocarpus fasciculatus EfasUO2)back to top |