mRNA_E_fasciculatus_S2_contig962.17635.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig962.17635.1
Unique NamemRNA_E_fasciculatus_S2_contig962.17635.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig962.17635.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L304_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.370e-33
Identity = 73/95 (76.84%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    1 MNHTGATA---VPGKAPLKLLQWALSQLEECARLRSVPASNVVEVAMAAIKDEMGVPVGAQQPNPPVVTDSPPAAGVAVHPA-APRASGGAVDRS 273
            M H GATA   VPGKAPLKLLQWALSQLEECAR RSVPASNVVEVAMAAIKDEMGVP G QQ          PAA VA HPA APR SGGAVDRS
Sbjct:   19 MKHPGATAAAAVPGKAPLKLLQWALSQLEECARTRSVPASNVVEVAMAAIKDEMGVPAGEQQS---------PAADVAAHPASAPRTSGGAVDRS 104
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BLAST of mRNA_E_fasciculatus_S2_contig962.17635.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.410e-31
Identity = 74/94 (78.72%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:    1 MNHTGATA--VPGKAPLKLLQWALSQLEECARLRSVPASNVVEVAMAAIKDEMGVPVGAQQPNPPVVTDSPPAAGVAVHPA-APRASGGAVDRS 273
            MNH GATA  VPGKAPLKLLQWALSQLEECAR RSVPASNVVEVAMAAIKDEMGVP G QQP         PAAGVA HPA APR SG AVD S
Sbjct:   19 MNHHGATAAAVPGKAPLKLLQWALSQLEECARTRSVPASNVVEVAMAAIKDEMGVPAGEQQP---------PAAGVAAHPASAPRTSGSAVDGS 103
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig962.17635.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.370e-3376.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Cleavage3.410e-3178.72and polyadenylation specificity factor subunit 2 n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig962contigE_fasciculatus_S2_contig962:22812..23090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score125.9
Seed ortholog evalue9.5e-27
Seed eggNOG ortholog2880.D7FQA4
Preferred nameCPSF2
Model size280
KEGG koko:K14402,ko:K17606
KEGG Pathwayko03015,ko04136,ko04138,ko04140,map03015,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0005911,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0031047,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Exons1
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG1236@1,KOG1135@2759
Cds size279
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.6796267-CDS-E_fasciculatus_S2_contig962:22811..230901696842608.6796267-CDS-E_fasciculatus_S2_contig962:22811..23090Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig962 22812..23090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig962.17635.1prot_E_fasciculatus_S2_contig962.17635.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig962 22812..23090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig962.17635.1

>prot_E_fasciculatus_S2_contig962.17635.1 ID=prot_E_fasciculatus_S2_contig962.17635.1|Name=mRNA_E_fasciculatus_S2_contig962.17635.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=93bp
MNHTGATAVPGKAPLKLLQWALSQLEECARLRSVPASNVVEVAMAAIKDE
MGVPVGAQQPNPPVVTDSPPAAGVAVHPAAPRASGGAVDRSAK
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mRNA from alignment at E_fasciculatus_S2_contig962:22812..23090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig962.17635.1 ID=mRNA_E_fasciculatus_S2_contig962.17635.1|Name=mRNA_E_fasciculatus_S2_contig962.17635.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig962:22812..23090+ (Ectocarpus fasciculatus EfasUO2)
ATGAACCACACTGGCGCAACAGCAGTCCCCGGCAAGGCGCCGCTGAAGCT
CCTCCAGTGGGCGCTTTCCCAGCTAGAGGAGTGCGCGCGATTGCGCTCCG
TTCCCGCTTCGAACGTGGTGGAAGTTGCGATGGCGGCTATCAAGGACGAG
ATGGGCGTGCCGGTGGGAGCGCAACAACCGAACCCGCCTGTGGTAACCGA
CTCACCTCCTGCCGCGGGTGTTGCGGTGCATCCCGCCGCGCCTCGTGCCA
GCGGCGGTGCTGTTGACAGGAGTGCGAAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig962:22812..23090+

>mRNA_E_fasciculatus_S2_contig962.17635.1 ID=mRNA_E_fasciculatus_S2_contig962.17635.1|Name=mRNA_E_fasciculatus_S2_contig962.17635.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig962:22812..23090+ (Ectocarpus fasciculatus EfasUO2)
ATGAACCACACTGGCGCAACAGCAGTCCCCGGCAAGGCGCCGCTGAAGCT
CCTCCAGTGGGCGCTTTCCCAGCTAGAGGAGTGCGCGCGATTGCGCTCCG
TTCCCGCTTCGAACGTGGTGGAAGTTGCGATGGCGGCTATCAAGGACGAG
ATGGGCGTGCCGGTGGGAGCGCAACAACCGAACCCGCCTGTGGTAACCGA
CTCACCTCCTGCCGCGGGTGTTGCGGTGCATCCCGCCGCGCCTCGTGCCA
GCGGCGGTGCTGTTGACAGGAGTGCGAAG
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