mRNA_E_fasciculatus_S2_contig962.17633.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig962.17633.1
Unique NamemRNA_E_fasciculatus_S2_contig962.17633.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig962.17633.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig962contigE_fasciculatus_S2_contig962:15875..18792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2576
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_006890.1
Cds size1989
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.5290577-CDS-E_fasciculatus_S2_contig962:15874..166301696842608.5290577-CDS-E_fasciculatus_S2_contig962:15874..16630Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig962 15875..16630 +
1696842608.541269-CDS-E_fasciculatus_S2_contig962:16972..182051696842608.541269-CDS-E_fasciculatus_S2_contig962:16972..18205Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig962 16973..18205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.5526373-UTR-E_fasciculatus_S2_contig962:18205..187921696842608.5526373-UTR-E_fasciculatus_S2_contig962:18205..18792Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig962 18206..18792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig962.17633.1prot_E_fasciculatus_S2_contig962.17633.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig962 15875..18205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig962.17633.1

>prot_E_fasciculatus_S2_contig962.17633.1 ID=prot_E_fasciculatus_S2_contig962.17633.1|Name=mRNA_E_fasciculatus_S2_contig962.17633.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=663bp
MQLELEHLQRQYKWRVLLSDAERLLSRPTNINRAQDDGNIGLLRSATPRL
QRGLTLAQQHPHQRQQQQQQHEEEEQQRDSAANFVWKSLCQNQGQPCSRS
PSSPVMATRCDPGLCVVGESVSPASSPTRGVSPSPPDALSSPKRLATSGR
MAPPLAYEGGVDAKPVDLGRTPRPHDECGPSAETGDSPVVRREDTPRQPP
GCQTTSSSFSDSSTNVCPSENENPSPTGNPPAQGNPPPNGGSSSTHPFTD
EEIIAMEKPSTNTNEGAFVSFSVTPEAAAAAAAAAAAAFTPQPNEGRQSH
SEGYGSGGGRPILDKASSSTSPLLSIPIPTAIAAAAPQAGITQRNDTTVG
ADPDPASYEEKQGEHRERQQSQNNQSQNERNHYQSPFGAGAGAGAGAGAG
VGAATGTGTSSNTLATATKPASFQSVLLATEWMETEGKPIAVPRGNARPL
VQVVSYNRPSTTVTGLQPIHPLPVFSDGNETPLRMVGAKISRDGATPANA
AATIATTVDRTPSSPTAGRLRGEIVSGPTWGWGGAGRGRAGRGEGGGGLS
SPTPTLFSCPNNHADGNDSENPFLLTTSDSGTCKIGVHSGSGRRPKGRRQ
RGRQQSAVRDRKSDATTVAEEEEEDAGDEREQSGPYSQSPPPSPTAWTPP
TGTRSLFSGGEV*
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mRNA from alignment at E_fasciculatus_S2_contig962:15875..18792+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig962.17633.1 ID=mRNA_E_fasciculatus_S2_contig962.17633.1|Name=mRNA_E_fasciculatus_S2_contig962.17633.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2918bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig962:15875..18792+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGCTGGAGCTGGAGCACCTACAACGACAATACAAATGGCGAGTGCT
CCTCAGCGACGCCGAACGCTTGCTATCACGGCCGACAAACATCAACCGCG
CCCAAGATGACGGCAACATCGGGCTGCTCCGCTCTGCAACCCCACGGCTT
CAGCGTGGCCTCACCCTCGCCCAACAACACCCACACCAGCGGCAACAGCA
GCAACAGCAGCACGAAGAAGAAGAGCAACAACGAGACTCAGCAGCCAACT
TCGTCTGGAAATCGCTTTGCCAAAACCAGGGGCAGCCGTGTTCGCGATCA
CCATCATCGCCGGTGATGGCGACACGATGTGATCCCGGGTTGTGCGTAGT
GGGCGAATCGGTGTCACCGGCGTCGTCTCCCACGAGAGGTGTGTCGCCTT
CACCGCCAGACGCTTTGTCGTCACCAAAGCGGTTGGCGACATCGGGACGA
ATGGCGCCTCCCCTCGCCTATGAGGGTGGCGTCGACGCAAAACCTGTTGA
CCTAGGAAGAACGCCCCGACCGCACGACGAATGCGGGCCGTCGGCGGAGA
CAGGGGATAGCCCGGTGGTGCGACGGGAAGACACCCCTCGACAACCTCCC
GGATGCCAGACCACCTCCTCATCTTTTTCAGACTCTTCGACAAACGTGTG
CCCCTCGGAGAATGAGAACCCCTCACCAACTGGGAACCCTCCAGCTCAGG
GGAACCCACCTCCAAACGGGGGTTCTTCGTCGACACATCCTTTTACTGAT
GAAGAGGTGACGAAATCAAACCGACACCGCGCAAGCTTGGAGCTATTATG
TCCTGCGCACTTTTCATCATCAGTAGACATGTGACAAGGCGGACAGAAAT
TTGGGCTCGTTTCGTCTGCTTCTTCGTACTGTTCGCCCGTAATGCGTAAT
GATTGCAAAACACCTGCCGTGAGTCGCTGATTCAATATTTTGTACTGAGT
TTAATGATACTCTACCATGCACCACGTGTTCATGAGGGCAAGCGTAAGAC
ACACACCTCGTCACGCCCTCCACCGGCCCGCGCGTAGCGCGTATCGAAAC
TGTTGTTGTTGTCGCTCACTCGTCACACCTTCAACTCTCGTATGGCAGAT
CATCGCAATGGAGAAGCCGTCAACGAATACGAACGAAGGCGCCTTCGTTT
CGTTCTCGGTAACGCCAGAAGCAGCAGCTGCAGCAGCTGCGGCGGCAGCA
GCTGCTTTCACCCCACAACCAAACGAAGGCCGCCAATCCCATTCTGAGGG
CTATGGAAGTGGTGGAGGGCGGCCCATACTCGACAAGGCTTCATCCTCGA
CGTCGCCACTCCTCTCGATTCCGATACCCACGGCGATCGCCGCAGCCGCA
CCTCAGGCTGGAATCACGCAGAGGAACGACACTACGGTCGGAGCCGACCC
CGACCCTGCGTCCTACGAAGAAAAGCAGGGAGAGCACCGGGAGCGGCAGC
AGAGCCAGAACAACCAAAGCCAGAACGAGAGGAATCATTATCAGTCGCCC
TTTGGTGCGGGTGCGGGTGCTGGTGCTGGTGCTGGTGCTGGTGTTGGTGC
TGCTACTGGTACTGGTACTTCGTCCAATACACTGGCAACAGCGACAAAGC
CGGCATCGTTCCAGTCGGTATTGCTGGCGACGGAATGGATGGAGACGGAA
GGGAAGCCGATTGCTGTGCCACGGGGAAACGCCAGACCACTTGTACAAGT
CGTCTCATACAACAGGCCGTCGACGACGGTCACAGGGCTGCAACCGATTC
ACCCTCTTCCGGTATTCTCCGACGGCAACGAGACACCGCTCCGCATGGTC
GGGGCCAAGATATCCCGAGATGGTGCAACACCTGCCAATGCTGCCGCAAC
CATTGCTACTACTGTGGATCGCACACCATCATCGCCAACTGCAGGACGTT
TGCGGGGGGAGATTGTGAGTGGTCCAACGTGGGGATGGGGCGGTGCGGGA
AGAGGACGGGCGGGACGCGGAGAAGGAGGGGGAGGACTATCATCGCCAAC
ACCGACGCTGTTCTCGTGCCCTAACAATCACGCCGACGGCAATGACAGCG
AGAACCCTTTCTTGCTCACCACTAGCGATAGCGGCACTTGCAAAATTGGC
GTGCACAGCGGCAGTGGGAGGAGACCAAAGGGTCGGCGTCAAAGAGGAAG
ACAACAGAGCGCGGTTCGTGACAGGAAAAGCGACGCAACAACAGTGGCCG
AGGAGGAGGAGGAGGACGCAGGCGACGAGCGGGAGCAGTCGGGCCCATAT
TCCCAGTCTCCTCCGCCAAGCCCTACCGCGTGGACGCCGCCCACTGGTAC
ACGGTCACTTTTTTCGGGGGGGGAAGTTTGACGATAGTTTATTAAAGGTT
TTGTACGCATATGGAGACGTAGATTGATCGTCCTATTTCTGCGCGAACAG
GTCCAAAAGTGTCACGGTCATTCTTCAAGGCGTGCCGTGCTTCGTGCGAC
GAAACGCCGGAAGACACAAATTGTACATTTAGCTGAGAGCTAGAGAGAAG
GGATTTTCAACGTTGGAGGACAGTGTGATTGGGAGCTAGAACTCTTAGTT
TGTTTTATCATCTTGGCACTCATGGAAGCAGGAGCGATTTTATTTGGGCG
GTGTGAGTCGAAGAATCTTGAGTGCCGGAGGACCCACGATAGAGTGAAAG
AGTATCTTATGCTTGTCGAACAACAGAGGGAGTCATTGGATGAAGACAAA
GCCATACGCGGTTACTGCGAGAGAACTACCCACACCGGCATCCGTAAAGT
ACGAACATGTATGTGCAGTGGCATGCACCAGTTTGCCCTTGTATGCTAAA
CGACAACATCAAACATTATTTTCCTTCCTGCACTTCGACTGCTGTTTAGA
CTCGATGTCAAGTCCTCGCACACGTTTCTTCGCGCTTCGCACTTAGCACG
TTTTTCATTTTCGAATTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig962:15875..18792+

>mRNA_E_fasciculatus_S2_contig962.17633.1 ID=mRNA_E_fasciculatus_S2_contig962.17633.1|Name=mRNA_E_fasciculatus_S2_contig962.17633.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1989bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig962:15875..18792+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGCTGGAGCTGGAGCACCTACAACGACAATACAAATGGCGAGTGCT
CCTCAGCGACGCCGAACGCTTGCTATCACGGCCGACAAACATCAACCGCG
CCCAAGATGACGGCAACATCGGGCTGCTCCGCTCTGCAACCCCACGGCTT
CAGCGTGGCCTCACCCTCGCCCAACAACACCCACACCAGCGGCAACAGCA
GCAACAGCAGCACGAAGAAGAAGAGCAACAACGAGACTCAGCAGCCAACT
TCGTCTGGAAATCGCTTTGCCAAAACCAGGGGCAGCCGTGTTCGCGATCA
CCATCATCGCCGGTGATGGCGACACGATGTGATCCCGGGTTGTGCGTAGT
GGGCGAATCGGTGTCACCGGCGTCGTCTCCCACGAGAGGTGTGTCGCCTT
CACCGCCAGACGCTTTGTCGTCACCAAAGCGGTTGGCGACATCGGGACGA
ATGGCGCCTCCCCTCGCCTATGAGGGTGGCGTCGACGCAAAACCTGTTGA
CCTAGGAAGAACGCCCCGACCGCACGACGAATGCGGGCCGTCGGCGGAGA
CAGGGGATAGCCCGGTGGTGCGACGGGAAGACACCCCTCGACAACCTCCC
GGATGCCAGACCACCTCCTCATCTTTTTCAGACTCTTCGACAAACGTGTG
CCCCTCGGAGAATGAGAACCCCTCACCAACTGGGAACCCTCCAGCTCAGG
GGAACCCACCTCCAAACGGGGGTTCTTCGTCGACACATCCTTTTACTGAT
GAAGAGATCATCGCAATGGAGAAGCCGTCAACGAATACGAACGAAGGCGC
CTTCGTTTCGTTCTCGGTAACGCCAGAAGCAGCAGCTGCAGCAGCTGCGG
CGGCAGCAGCTGCTTTCACCCCACAACCAAACGAAGGCCGCCAATCCCAT
TCTGAGGGCTATGGAAGTGGTGGAGGGCGGCCCATACTCGACAAGGCTTC
ATCCTCGACGTCGCCACTCCTCTCGATTCCGATACCCACGGCGATCGCCG
CAGCCGCACCTCAGGCTGGAATCACGCAGAGGAACGACACTACGGTCGGA
GCCGACCCCGACCCTGCGTCCTACGAAGAAAAGCAGGGAGAGCACCGGGA
GCGGCAGCAGAGCCAGAACAACCAAAGCCAGAACGAGAGGAATCATTATC
AGTCGCCCTTTGGTGCGGGTGCGGGTGCTGGTGCTGGTGCTGGTGCTGGT
GTTGGTGCTGCTACTGGTACTGGTACTTCGTCCAATACACTGGCAACAGC
GACAAAGCCGGCATCGTTCCAGTCGGTATTGCTGGCGACGGAATGGATGG
AGACGGAAGGGAAGCCGATTGCTGTGCCACGGGGAAACGCCAGACCACTT
GTACAAGTCGTCTCATACAACAGGCCGTCGACGACGGTCACAGGGCTGCA
ACCGATTCACCCTCTTCCGGTATTCTCCGACGGCAACGAGACACCGCTCC
GCATGGTCGGGGCCAAGATATCCCGAGATGGTGCAACACCTGCCAATGCT
GCCGCAACCATTGCTACTACTGTGGATCGCACACCATCATCGCCAACTGC
AGGACGTTTGCGGGGGGAGATTGTGAGTGGTCCAACGTGGGGATGGGGCG
GTGCGGGAAGAGGACGGGCGGGACGCGGAGAAGGAGGGGGAGGACTATCA
TCGCCAACACCGACGCTGTTCTCGTGCCCTAACAATCACGCCGACGGCAA
TGACAGCGAGAACCCTTTCTTGCTCACCACTAGCGATAGCGGCACTTGCA
AAATTGGCGTGCACAGCGGCAGTGGGAGGAGACCAAAGGGTCGGCGTCAA
AGAGGAAGACAACAGAGCGCGGTTCGTGACAGGAAAAGCGACGCAACAAC
AGTGGCCGAGGAGGAGGAGGAGGACGCAGGCGACGAGCGGGAGCAGTCGG
GCCCATATTCCCAGTCTCCTCCGCCAAGCCCTACCGCGTGGACGCCGCCC
ACTGGTACACGGTCACTTTTTTCGGGGGGGGAAGTTTGA
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