mRNA_E_fasciculatus_S2_contig9616.17628.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9616.17628.1
Unique NamemRNA_E_fasciculatus_S2_contig9616.17628.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9616.17628.1 vs.
Match: Condensin (complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 3.840e-89
Identity = 214/273 (78.39%), Postives = 223/273 (81.68%), Query Frame = 1 
Query:    1 RGMLLNNLSVSDGCKVSFDSESSAAAATAPPTPEGADGQPRREKVFRNPEDVEDGEEGKDRETPVGEEAGEQHPAAAEAGGGMTNIKDLRSTLFSLCGDLSSLALCPQLQEFRDQIAEIEDETHKDSGEASAPHAGRGGTRGGGAVGSYDTDXXXXXXXXXXXXFDDVPGLDDASVXXXXXXXXXXXXXXAGHDFSLGXXXXDDD-ADPFQADXXXXXXXXXXTSFLVDGDGEFXXXLXSGGGAGSPESGGVGMV---VTPVTLEDRLCVDMK 807
            +GMLLNNLSVSDGCKVSFDSESSAAA TAPP+PEGA+ QPRREKVFR PEDVEDGEE KD ETP GEEAGEQHPAAAEA GGMTNIKDLRSTLFSLCGDLS+LALCPQL+EFRDQIAEIE+ETHKDSGEA+AP AGRGG RG GA  SYDTD XXXXXXXXX  FD+VPGLDDASV   XXXXXXXXXXX   DF+L XXXX    ADPFQAD XXXXXXXX TSFLVDGDGE  XX X                   VTPVTLEDRLCVDMK
Sbjct:  143 KGMLLNNLSVSDGCKVSFDSESSAAA-TAPPSPEGAEDQPRREKVFRKPEDVEDGEESKDGETPTGEEAGEQHPAAAEAAGGMTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETHKDSGEAAAPRAGRGGARGDGAAVSYDTDDXXXXXXXXX--FDNVPGLDDASVDGGXXXXXXXXXXXX--DFNLXXXXXXXXXADPFQADNXXXXXXXXGTSFLVDGDGEIGXXXXXXXXXXXXXXXXXXXXXXXVTPVTLEDRLCVDMK 410
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9616.17628.1 vs.
Match: Condensin (complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K318_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 2.030e-76
Identity = 158/208 (75.96%), Postives = 172/208 (82.69%), Query Frame = 1 
Query:    1 RGMLLNNLSVSDGCKVSFDSESSAAAATAPPTPEGADGQPRREKVFRNPEDVEDGEEGKDRETPVGEEAGEQHPAAAEAGGGMTNIKDLRSTLFSLCGDLSSLALCPQLQEFRDQIAEIEDETHKDSGEASAPHAGRGGTRG--GGAVGSYDTDXXXXXXXXXXXXFDDVPGLDDASVXXXXXXXXXXXXXXAGHDFSLGXXXXDDDA 618
            +GMLLNNLSVSDGCKVSFDSESSAAA TAPP+PEGA  + RR+KVFR PE V+DGE+ KD ETP  EEAG+QHPAAAEA  GMTNIKDLRSTLFSLCGDLS+LALCPQL+EFRDQIAEIE+ET++DSGEA+APHAGRGG RG  GGA  SYDT  XXXXXXXXXXXFDDVPGLDDASV           XX  GHDF+LG    DDDA
Sbjct:  167 KGMLLNNLSVSDGCKVSFDSESSAAA-TAPPSPEGAVDRSRRDKVFRKPEGVDDGEDSKDGETPAEEEAGKQHPAAAEAAEGMTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETNRDSGEAAAPHAGRGGARGDDGGAEASYDT--XXXXXXXXXXXFDDVPGLDDASVDGGGNFGAGGDXX--GHDFNLGGGADDDDA 369
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9616.17628.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Condensin3.840e-8978.39complex subunit 2 n=1 Tax=Ectocarpus siliculosus T... [more]
Condensin2.030e-7675.96complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9616contigE_fasciculatus_S2_contig9616:861..3401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score296.6
Seed ortholog evalue1.2e-77
Seed eggNOG ortholog2880.D8LD70
Preferred nameBRN1
Model size811
KEGG koko:K06676
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0001671,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0008047,GO:0008150,GO:0008608,GO:0009987,GO:0010911,GO:0010912,GO:0016043,GO:0019899,GO:0022402,GO:0030234,GO:0030261,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0033553,GO:0034506,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044547,GO:0044815,GO:0048285,GO:0050000,GO:0050790,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060589,GO:0060590,GO:0061638,GO:0065007,GO:0065009,GO:0070013,GO:0070058,GO:0071103,GO:0071840,GO:0072586,GO:0072587,GO:0098687,GO:0098772,GO:0098813,GO:0140014,GO:1903047,GO:2000371,GO:2000373
Exons5
EggNOG free text desc.DNA topoisomerase (ATP-hydrolyzing) activator activity
EggNOG OGsCOG5229@1,KOG2328@2759
Cds size804
COG Functional cat.BD
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9616.17628.1prot_E_fasciculatus_S2_contig9616.17628.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9616 867..3401 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.0465653-UTR-E_fasciculatus_S2_contig9616:860..8661696842608.0465653-UTR-E_fasciculatus_S2_contig9616:860..866Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9616 861..866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.0590715-CDS-E_fasciculatus_S2_contig9616:866..10371696842608.0590715-CDS-E_fasciculatus_S2_contig9616:866..1037Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9616 867..1037 +
1696842608.072748-CDS-E_fasciculatus_S2_contig9616:1302..14281696842608.072748-CDS-E_fasciculatus_S2_contig9616:1302..1428Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9616 1303..1428 +
1696842608.083695-CDS-E_fasciculatus_S2_contig9616:1974..20591696842608.083695-CDS-E_fasciculatus_S2_contig9616:1974..2059Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9616 1975..2059 +
1696842608.0952573-CDS-E_fasciculatus_S2_contig9616:2500..27291696842608.0952573-CDS-E_fasciculatus_S2_contig9616:2500..2729Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9616 2501..2729 +
1696842608.1105046-CDS-E_fasciculatus_S2_contig9616:3208..34011696842608.1105046-CDS-E_fasciculatus_S2_contig9616:3208..3401Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9616 3209..3401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9616.17628.1

>prot_E_fasciculatus_S2_contig9616.17628.1 ID=prot_E_fasciculatus_S2_contig9616.17628.1|Name=mRNA_E_fasciculatus_S2_contig9616.17628.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=268bp
MLLNNLSVSDGCKVSFDSESSAAAATAPPTPEGADGQPRREKVFRNPEDV
EDGEEGKDRETPVGEEAGEQHPAAAEAGGGMTNIKDLRSTLFSLCGDLSS
LALCPQLQEFRDQIAEIEDETHKDSGEASAPHAGRGGTRGGGAVGSYDTD
DDSDGGGGGGGGFDDVPGLDDASVDGGGDFGGGGGDDDAGHDFSLGGGAA
DDDADPFQADNGGGFGGGGGTSFLVDGDGEFGGGLGSGGGAGSPESGGVG
MVVTPVTLEDRLCVDMKA
back to top

mRNA from alignment at E_fasciculatus_S2_contig9616:861..3401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9616.17628.1 ID=mRNA_E_fasciculatus_S2_contig9616.17628.1|Name=mRNA_E_fasciculatus_S2_contig9616.17628.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2541bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9616:861..3401+ (Ectocarpus fasciculatus EfasUO2)
AGGGGGATGCTGCTGAACAACCTAAGCGTGAGCGACGGGTGCAAGGTGTC
GTTCGACTCCGAATCGTCGGCTGCTGCTGCCACGGCCCCACCTACGCCGG
AGGGTGCGGATGGTCAGCCGAGGCGGGAGAAGGTTTTCAGGAACCCGGAA
GACGTGGAAGACGGAGAGGAGGGCAAGGTAGGTTAGGAAGATAGGACAGT
TGCTGCTGTAGGTCTCGTTTGCGGTAACGATATTCGAAAGATCAAATCGC
ACAAGTTGCTGCTGTAGGGTCGAGTTTGTGTTACAACGATATTCGAAAGA
TCAAATCACACAAACTCAGGTGTCAATAGTTGTCTTTTTTTGGTGGGTCG
AACCGTTTTTTTTTGTTTTGGAAACACACCCCGTGACGTACCCCTACCCA
CCGTCCACCCGACGATGCCCATTCCAGGAAACATCGGAAAAGGACCGTGA
AACCCCTGTCGGGGAGGAAGCAGGAGAGCAACACCCGGCGGCGGCAGAAG
CGGGCGGAGGAATGACGAATATCAAGGACCTCCGTTCGACGCTCTTCTCC
CTCTGCGGAGACCTGTCGGTTAGTGGTGGGCCCATTTGTCGCGGTGTTAG
GTGGTGTATATTCCATGGGACACAAGAGAATATCACCACGATATAGTGTC
TGTGTTCCATGTGTTCCAGCGATAGGGCGTTGACGGGTATCCGAGAGCTT
CAGGTGGCGCTCGTCTACCCTCTGGGGGTATTAAGTGGTTGGTGGATTCG
TTTTGTCGCGGTTTTAGGTGGAGTATATTCCATGGAAGAGAGTATCACCA
CGGTATCTGTGTTCCAGCGATACAATAGGATGTTGGCGGATATTAAGACC
CTTGGTCGACGCTTGCGGAGGCTTGTCGGGTATGTGGGTTTAGTGGTTGA
AGGTCTTAGGTGGTGCACCATTAGTGGATTCACGGCGCGGAATGTTCCAG
CGCGACGCTCGTAACGGATATGAAGGGCCTGCGATTTTTTCCTCCCCTTG
CAGAGATTTGTTCGTCTAAACTGTAGCTTCTTTCGTTCTTGACCGCTATC
CTTATGTTACTGCTGTACCCCTGTCTTCTTCGTGCCACTGTCCCATGCCC
ATCCCTCCCCGTAGTCCTTGGCCCTGTGCCCCCAGCTGCAAGAGTTCCGC
GACCAGATCGCGGAGATAGAAGACGAAACTCACAAGGACAGCGGCGAAGG
TGACAGCCGACGCCTCCGGCCCTCCACCTGCATCTTCTTTTCTGTTGACA
GAGTCGAGGATGGAGTTGGGAATGTTGGGATCAGTGTCGTAGTGGGGATG
CAGGACATTTGTCTTTGTTTTTTAGGTCTTTTTTTTCTTTTCCATTGTCT
TCGCTTCATATCTACGCTCACATCATTTGTGCCGTATACTTCATCCCGTG
GTCACATCACACAGGAGTTCATCGCGGTGAAACGTAACTTCCATTACCAT
TATACTAATGCATGGGGGGACACATCGTCTTCCATGTCACCTAACCCGCT
TCAAGGGCGCATTATTTGAACACCCACCATGAAGGTGAGTGTCCAGAAAA
GCAGGACGGTTGTATGCACACACCAACATCACCATCAACAACACTCCACG
AACGCACCCGCCAACGAGCTCTCGCCCTCCCTTCAACCAGCATCCGCGCC
GCACGCCGGAAGGGGAGGGACGCGTGGTGGTGGTGCGGTGGGGAGCTACG
ACACCGACGACGACTCTGACGGGGGAGGAGGCGGGGGGGGAGGTTTCGAC
GACGTCCCCGGGTTGGACGACGCCTCTGTGGATGGCGGGGGAGATTTCGG
AGGAGGAGGCGGTGATGATGACGCGGGGCATGACTTCAGCCTCGGTGGTG
GTGCTGCTGATGACGACGCGTAAGTGGAGAGTAGCCGCGCTGCTGCTGCT
GCTGTTTTTTCTTTTTTCTTTGAGAGAACATGCGCAAAACACACGGAAAT
ACTATATATAAAGACTACCCGTTCGAGATAATGCCACAGCAGTCGAAGGG
GATGTGTTGTTTTCGGTACAGTGTGTGGGAAGATGTGCTGAATTTTTTTT
TTTGCTGACAGCGGTATGATGGAGGACCGGCAGGGTGCCGTGATAGCCCT
TTGCTGAGTTGTTGTCCTGGGGGGCTCCGCCATTGTGCATGCATTATATT
TTCGGGCGTCAAACTCTTGTCCAGTTGCAGCCTGCGCAGGGTTTGTCGAT
TACCTAAGTAAACACGGGGTAGTTGGGTTAGAGATAGGAATAGGGATAGG
GTCTGCGTGCCCCCCTCCCTGTTATATTTCGTCATAAATATTCATTTATC
GCGAAGACGGTCCCTATTCTGCCCCCCCCCCCCGCCCCCCATCTGCAGGG
ATCCCTTCCAGGCTGACAACGGGGGTGGGTTCGGCGGCGGCGGCGGGACC
TCTTTCCTGGTGGACGGCGATGGGGAGTTCGGGGGTGGGCTTGGGTCCGG
TGGTGGTGCGGGCTCGCCGGAGTCGGGTGGGGTGGGTATGGTGGTGACGC
CGGTTACCCTTGAGGACAGGCTTTGCGTCGACATGAAGGCA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9616:861..3401+

>mRNA_E_fasciculatus_S2_contig9616.17628.1 ID=mRNA_E_fasciculatus_S2_contig9616.17628.1|Name=mRNA_E_fasciculatus_S2_contig9616.17628.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=804bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9616:861..3401+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGCTGAACAACCTAAGCGTGAGCGACGGGTGCAAGGTGTCGTTCGA
CTCCGAATCGTCGGCTGCTGCTGCCACGGCCCCACCTACGCCGGAGGGTG
CGGATGGTCAGCCGAGGCGGGAGAAGGTTTTCAGGAACCCGGAAGACGTG
GAAGACGGAGAGGAGGGCAAGGACCGTGAAACCCCTGTCGGGGAGGAAGC
AGGAGAGCAACACCCGGCGGCGGCAGAAGCGGGCGGAGGAATGACGAATA
TCAAGGACCTCCGTTCGACGCTCTTCTCCCTCTGCGGAGACCTGTCGTCC
TTGGCCCTGTGCCCCCAGCTGCAAGAGTTCCGCGACCAGATCGCGGAGAT
AGAAGACGAAACTCACAAGGACAGCGGCGAAGCATCCGCGCCGCACGCCG
GAAGGGGAGGGACGCGTGGTGGTGGTGCGGTGGGGAGCTACGACACCGAC
GACGACTCTGACGGGGGAGGAGGCGGGGGGGGAGGTTTCGACGACGTCCC
CGGGTTGGACGACGCCTCTGTGGATGGCGGGGGAGATTTCGGAGGAGGAG
GCGGTGATGATGACGCGGGGCATGACTTCAGCCTCGGTGGTGGTGCTGCT
GATGACGACGCGGATCCCTTCCAGGCTGACAACGGGGGTGGGTTCGGCGG
CGGCGGCGGGACCTCTTTCCTGGTGGACGGCGATGGGGAGTTCGGGGGTG
GGCTTGGGTCCGGTGGTGGTGCGGGCTCGCCGGAGTCGGGTGGGGTGGGT
ATGGTGGTGACGCCGGTTACCCTTGAGGACAGGCTTTGCGTCGACATGAA
GGCA
back to top