mRNA_E_fasciculatus_S2_contig9615.17627.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9615.17627.1
Unique NamemRNA_E_fasciculatus_S2_contig9615.17627.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9615.17627.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9615contigE_fasciculatus_S2_contig9615:2329..2633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size245
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842607.9907184-CDS-E_fasciculatus_S2_contig9615:2328..24131696842607.9907184-CDS-E_fasciculatus_S2_contig9615:2328..2413Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9615 2329..2413 +
1696842608.0013888-CDS-E_fasciculatus_S2_contig9615:2475..26241696842608.0013888-CDS-E_fasciculatus_S2_contig9615:2475..2624Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9615 2476..2624 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842608.0119302-UTR-E_fasciculatus_S2_contig9615:2624..26331696842608.0119302-UTR-E_fasciculatus_S2_contig9615:2624..2633Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9615 2625..2633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9615.17627.1prot_E_fasciculatus_S2_contig9615.17627.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9615 2329..2624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9615.17627.1

>prot_E_fasciculatus_S2_contig9615.17627.1 ID=prot_E_fasciculatus_S2_contig9615.17627.1|Name=mRNA_E_fasciculatus_S2_contig9615.17627.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp
KDRVAKQEKALGSRTGGCNVTLKGVGRCSWRYKHEYCIERRSTGASRLQE
TDVGFTLWGCISHQPPIGKTIGTSRGI*
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mRNA from alignment at E_fasciculatus_S2_contig9615:2329..2633+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9615.17627.1 ID=mRNA_E_fasciculatus_S2_contig9615.17627.1|Name=mRNA_E_fasciculatus_S2_contig9615.17627.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=305bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9615:2329..2633+ (Ectocarpus fasciculatus EfasUO2)
AAAGATCGGGTGGCCAAACAGGAAAAGGCTTTGGGCTCGCGGACAGGTGG
TTGCAACGTCACGTTGAAAGGAGTAGGGCGATGTTCGTTGGCGGTCGAGT
ACACTGCGATGGACATGGTTCCAACGAACCTTACCATCTCACCCATACGT
GGCGGTATAAGCATGAGTACTGTATTGAGAGAAGATCAACAGGAGCGTCG
CGTTTGCAGGAAACAGACGTTGGATTTACTCTGTGGGGGTGCATCAGTCA
TCAACCACCAATTGGCAAAACGATTGGTACAAGCAGAGGAATCTAGCTTG
GCCGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9615:2329..2633+

>mRNA_E_fasciculatus_S2_contig9615.17627.1 ID=mRNA_E_fasciculatus_S2_contig9615.17627.1|Name=mRNA_E_fasciculatus_S2_contig9615.17627.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9615:2329..2633+ (Ectocarpus fasciculatus EfasUO2)
AAAGATCGGGTGGCCAAACAGGAAAAGGCTTTGGGCTCGCGGACAGGTGG
TTGCAACGTCACGTTGAAAGGAGTAGGGCGATGTTCGTGGCGGTATAAGC
ATGAGTACTGTATTGAGAGAAGATCAACAGGAGCGTCGCGTTTGCAGGAA
ACAGACGTTGGATTTACTCTGTGGGGGTGCATCAGTCATCAACCACCAAT
TGGCAAAACGATTGGTACAAGCAGAGGAATCTAG
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