mRNA_E_fasciculatus_S2_contig9593.17612.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9593.17612.1
Unique NamemRNA_E_fasciculatus_S2_contig9593.17612.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9593.17612.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZL7_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.610e-38
Identity = 95/108 (87.96%), Postives = 98/108 (90.74%), Query Frame = 2 
Query:   98 MDASAETAALRRQLEKAVSSEDVERIGDVLNSLGKMDVTLAVLQESKVGATVSKLKKHADGGVSNSAKALVKKWKRVAEASGVQGAPXXXXXXXXXXXXXXPGSAGKG 421
            MDASAETA LRRQLEKAVS+EDVERI DVL SLGK++VTLAVLQESKVGATVSKLKKHAD  VS SAKALVKKWKRVAEASGVQG  XXXXXXXXXXXX  PGSAGKG
Sbjct:    1 MDASAETAVLRRQLEKAVSAEDVERIADVLGSLGKVEVTLAVLQESKVGATVSKLKKHADEEVSKSAKALVKKWKRVAEASGVQGXXXXXXXXXXXXXXSPPGSAGKG 108
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BLAST of mRNA_E_fasciculatus_S2_contig9593.17612.1 vs.
Match: Transcription (factor S-II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH25_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.580e-17
Identity = 43/84 (51.19%), Postives = 64/84 (76.19%), Query Frame = 2 
Query:  104 ASAETAALRRQLEKAVSSEDVERIGDVLNSLGKMDVTLAVLQESKVGATVSKLKKHADGGVSNSAKALVKKWKRVAEASGVQGA 355
            A+ E A LR  +EKAV+  D  R+ D+L+ L K+D+T+ ++ ESK+G+ VSKL+KHAD  V+  AKALVK WK++A+A+GV+G+
Sbjct:    5 AAREVAELRDAMEKAVTKADAPRVCDILSQLEKVDMTVDIMAESKIGSAVSKLRKHADSRVAGQAKALVKVWKQLAQAAGVEGS 88
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BLAST of mRNA_E_fasciculatus_S2_contig9593.17612.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MN26_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.470e-10
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 2 
Query:  107 SAETAALRRQLEKAVSSEDVERIGDVLNSLGKMDVTLAVLQESKVGATVSKLKKHADGGVSNSAKALVKKWKRVAEASGVQG 352
            S E   L+  L KA  S+D ER  D+L  L ++ +TL +L  + +G  VSKLK H DG V++ AKALVKKWK++A+  GV G
Sbjct:   33 SFEIKQLKENLSKA--SDDKERCMDILQRLEELPMTLQLLSATLIGTVVSKLKSHKDGAVASKAKALVKKWKKLAKEGGVGG 112
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BLAST of mRNA_E_fasciculatus_S2_contig9593.17612.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TFD7_THAOC)

HSP 1 Score: 65.1 bits (157), Expect = 8.750e-10
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:  167 ERIGDVLNSLGKMDVTLAVLQESKVGATVSKLKKHADGGVSNSAKALVKKWKRVAEAS 340
            E+I D+L  L K DVTL++L E+ +GA+V+KLKKH+D  VS++A  LVKKWK VA+AS
Sbjct:   28 EKILDILERLDKTDVTLSILTETLIGASVAKLKKHSDVDVSSAAAKLVKKWKSVAKAS 85
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BLAST of mRNA_E_fasciculatus_S2_contig9593.17612.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WI09_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.620e-9
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 2 
Query:  161 DVERIGDVLNSLGKMDVTLAVLQESKVGATVSKLKKHADGGVSNSAKALVKKWKRVAEASGV 346
            + ERI D+L  L   D+ +AVL ++ VGA VSK+K H D  V+ +AKALVKKWK++A+  GV
Sbjct:    1 NAERILDILRRLDDADINIAVLSQTLVGAVVSKMKSHRDASVAAAAKALVKKWKKLAKEGGV 62
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BLAST of mRNA_E_fasciculatus_S2_contig9593.17612.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ET91_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.640e-9
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 2 
Query:  107 SAETAALRRQLEKAVSSEDVERIGDVLNSLGKMDVTLAVLQESKVGATVSKLKKHADGGVSNSAKALVKKWKRVAEASGV 346
            S E   L+  L KA    D ER  D+L  L ++ +TL +L E+ VG  VSKLK H D  V + AKALVKKWK++A+  GV
Sbjct:   52 SFEIKQLKESLLKAEG--DKERCLDILQRLEEVPMTLKLLSETLVGTVVSKLKSHKDAAVQSKAKALVKKWKKLAKEGGV 129
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BLAST of mRNA_E_fasciculatus_S2_contig9593.17612.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PDH7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.830e-9
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2 
Query:  167 ERIGDVLNSLGKMDVTLAVLQESKVGATVSKLKKHADGGVSNSAKALVKKWKRVA 331
            E+I D+L  L K  + LAVL E+ +GA+VSKLKKH +  ++N+AK LVKKWK VA
Sbjct:   28 EKILDILQRLEKQKIDLAVLTETLIGASVSKLKKHENAEIANTAKGLVKKWKGVA 82
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BLAST of mRNA_E_fasciculatus_S2_contig9593.17612.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ETU1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.360e-8
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 2 
Query:  107 SAETAALRRQLEKAVSSEDVERIGDVLNSLGKMDVTLAVLQESKVGATVSKLKKHADGGVSNSAKALVKKWKRVAEASGV 346
            S E   L+  L KA    D ER  D+L  L ++ +TL +L E+ VG  VSKLK H D  V + AKALVKKWK++A+  GV
Sbjct:   13 SFEIKQLKESLLKAEG--DKERCLDILQRLEEVPMTLKLLSETLVGTVVSKLKSHKDAAVQSKAKALVKKWKKLAKEGGV 90
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9593.17612.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PF17_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.940e-8
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2 
Query:  167 ERIGDVLNSLGKMDVTLAVLQESKVGATVSKLKKHADGGVSNSAKALVKKWKRVA 331
            E+I D+L  L K  + LAVL E+ +GA+VSKLKKH +  ++N+AK LVKKWK VA
Sbjct:   28 EKILDILQRLEKQKIDLAVLTETLIGASVSKLKKHENAEIANTAKGLVKKWKGVA 82
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BLAST of mRNA_E_fasciculatus_S2_contig9593.17612.1 vs.
Match: Transcription (elongation factor S-II n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TW44_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.200e-7
Identity = 30/71 (42.25%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:  125 LRRQLEKAVSSEDVERIG--DVLNSLGKMDVTLAVLQESKVGATVSKLKKHADGGVSNSAKALVKKWKRVA 331
            L ++L K ++ +D ++ G  D ++ L K+D+TLA+L+++K+G T++KL+KH    VS+ AK L+KKWK +A
Sbjct:    7 LHKRLTKFLAGDDNDQNGVADAMDHLNKVDMTLAILKDTKIGQTIAKLRKHDAELVSSKAKILLKKWKTLA 77
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9593.17612.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.610e-3887.96protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZL7... [more]
Transcription7.580e-1751.19factor S-II-domain-containing protein n=1 Tax=Trib... [more]
Hypothetical2.470e-1047.56protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Uncharacterized8.750e-1058.62protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
Hypothetical4.620e-951.61protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Hypothetical5.640e-947.50protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical6.830e-956.36protein (Fragment) n=1 Tax=Skeletonema marinoi Tax... [more]
Hypothetical3.360e-847.50protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical8.940e-856.36protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Transcription3.200e-742.25elongation factor S-II n=1 Tax=Aphanomyces invadan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9593contigE_fasciculatus_S2_contig9593:3227..5097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score145.2
Seed ortholog evalue1.8e-32
Seed eggNOG ortholog2880.D7FZL7
Model size421
KEGG koko:K03145,ko:K03926
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Exons2
EggNOG free text desc.Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen
EggNOG OGsCOG1594@1,KOG1105@2759
Cds size324
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842605.7972083-UTR-E_fasciculatus_S2_contig9593:3226..33231696842605.7972083-UTR-E_fasciculatus_S2_contig9593:3226..3323Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9593 3227..3323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842605.811428-CDS-E_fasciculatus_S2_contig9593:3323..33861696842605.811428-CDS-E_fasciculatus_S2_contig9593:3323..3386Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9593 3324..3386 +
1696842605.822814-CDS-E_fasciculatus_S2_contig9593:4836..50971696842605.822814-CDS-E_fasciculatus_S2_contig9593:4836..5097Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9593 4837..5097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9593.17612.1prot_E_fasciculatus_S2_contig9593.17612.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9593 3324..5097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9593.17612.1

>prot_E_fasciculatus_S2_contig9593.17612.1 ID=prot_E_fasciculatus_S2_contig9593.17612.1|Name=mRNA_E_fasciculatus_S2_contig9593.17612.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=108bp
MDASAETAALRRQLEKAVSSEDVERIGDVLNSLGKMDVTLAVLQESKVGA
TVSKLKKHADGGVSNSAKALVKKWKRVAEASGVQGAPSAAAGTAGKAGKA
APGSAGKG
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mRNA from alignment at E_fasciculatus_S2_contig9593:3227..5097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9593.17612.1 ID=mRNA_E_fasciculatus_S2_contig9593.17612.1|Name=mRNA_E_fasciculatus_S2_contig9593.17612.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1871bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9593:3227..5097+ (Ectocarpus fasciculatus EfasUO2)
CAGGCACTAGCAAAGAAGGTACAGAGCTGCTCCGTGTGTACTCTGCTACT
GCTGTGTACTTGCTGCTGCTGTGTGCTGCTGCGATCCTTGGGGCGAGATG
GACGCATCGGCGGAAACTGCAGCCCTTAGGCGGCAGCTGGAGAAGGCAGT
TTCCAGCGAGGTATGTACATTTGTACAACAACGCTGTACTAAAAATGACT
TGTTTCGAGTTTGATCAACCCGTCCGCACACCGCTGGCTAGTCCTAACTC
GGCTCGTTCTAACGCCCCGCGGGCATGAGGCCTCGCTGTACAGACATCAC
CCACGCGGGGCTTGGTGGTGCGCCAAGTTCTGTTTGCGAAAGAGCGAGCT
TTCGCGCCGTGGATTGCTTCTGAAATGGGTGCAGTCCAAATCATGAGGAC
TCTCAGATCTCTCTTTGGAGACGACTATACGTGTACTCTGCTTGTAGCAG
TAGGCGATCGTTCGCCCCTGTGGCTCGAGAAGGAAGGGGCGGCACCTACC
TACATGCATTGGCATACGAATATCTATATGTTCGCGTCCCGTTGGTTGTG
GTCTTGTGGTCTTCATGTTGGCAGCATGCGTCCGTCGTAGCGCATCCCAC
GCACGCTACTCATGGTACACGAGGTGTCGAGATGTAGGTCAAGCACCGAT
CTATCTGCTGTAGACTAAGACTACGGGCGTGGCTAGGTTTGCTACTGCTG
TGCGTGGAGTTGTCGGCGGGAAAGGAAGAACGCTCGCAACACGGCGGGCA
CACACACACCAGTGTCAACAGCAGTATCATACTGCCGTTGTACGCATACT
CGTTGCAGAGACGGGAATTTTGTACCGGTAGATAGATACCACGTGCAGGG
ATTTCGTATGTACAGTAGCTGACACAGGAGCATCACCGATCGTCGACCGT
CGACTGCTGTTTTAAGGTGTGAGGCGCAATACTCCCTCCCGACCTCACCA
CAAAACCACACCAAAGCTGGTTGGGTGATAACGGCACAGCATCTCCACTG
AACTATGCATGCGAAGGCGGTATTTAATATACTGTTGTAGCCTCCCCAGC
ATAGAGACGTTTGCCACAGACGAAAATGAAAAATGGATGCATCGAAACGG
TGCGCCAGTCCTCCGGAGCATACGCGGCACGATTCACGAAGACGTTATAT
AGCTGAAGAGTGTTTCCTCTCTTTTCGTTCATCACTTGAAATCGGCGCTC
ACACGCACATCTCTGCAGTAAAGGAGCTCCAATCCGTGGTAACGCGGAAG
GTTCTCCCCCCCCCCCTGAGGCCCCCTTGCCCACCCATCGTGCGGCAGAT
GCTTGCGCCTTGAACGAATATCAGCGCTCGCACACCCAGCATTTCTGCAG
CCCCCCCCGTGAGGCCCCCTACTCACCCCTCCTGCGGTAGATGCTTGCCT
TCCACGAAAATCAGCGCTCGCACACACAGCGTTTCTGGAGTTCAGGAGCT
TGGTTTCGTGGTCAGTCGCACAGAAGGCTTCCTCCTCCTCCACCCCTCCT
GCGGTGGATCCTTGCCTTCGTTTTTTAACGTGTTTATGGAAACGAGAAAC
GATATTTTCCTTGTATTTCCGTTATTTCTCCCTGAAACGTTGTTTCTCCC
TTGGGCACAGGACGTGGAGCGCATCGGCGACGTGCTAAACTCGCTCGGAA
AGATGGACGTGACGCTGGCGGTACTCCAGGAGAGCAAGGTCGGAGCGACG
GTTTCAAAGCTCAAGAAACACGCCGATGGAGGGGTTTCCAACAGCGCCAA
GGCTTTGGTCAAGAAGTGGAAGAGGGTAGCCGAGGCGTCGGGGGTGCAGG
GTGCTCCTTCCGCGGCAGCCGGTACTGCTGGAAAGGCGGGGAAGGCGGCT
CCGGGATCGGCGGGAAAGGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9593:3227..5097+

>mRNA_E_fasciculatus_S2_contig9593.17612.1 ID=mRNA_E_fasciculatus_S2_contig9593.17612.1|Name=mRNA_E_fasciculatus_S2_contig9593.17612.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=324bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9593:3227..5097+ (Ectocarpus fasciculatus EfasUO2)
ATGGACGCATCGGCGGAAACTGCAGCCCTTAGGCGGCAGCTGGAGAAGGC
AGTTTCCAGCGAGGACGTGGAGCGCATCGGCGACGTGCTAAACTCGCTCG
GAAAGATGGACGTGACGCTGGCGGTACTCCAGGAGAGCAAGGTCGGAGCG
ACGGTTTCAAAGCTCAAGAAACACGCCGATGGAGGGGTTTCCAACAGCGC
CAAGGCTTTGGTCAAGAAGTGGAAGAGGGTAGCCGAGGCGTCGGGGGTGC
AGGGTGCTCCTTCCGCGGCAGCCGGTACTGCTGGAAAGGCGGGGAAGGCG
GCTCCGGGATCGGCGGGAAAGGGT
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