mRNA_E_fasciculatus_S2_contig9592.17611.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9592.17611.1
Unique NamemRNA_E_fasciculatus_S2_contig9592.17611.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9592.17611.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.130e-29
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 2 
Query:    2 LELAKEGARWLRDYEGWGVGSSALVVEEGQEPFEVLRHLNRTGGDAREPPVYGDLTSPSP 181
            LELAKEGARWLRDYEGWGVGSSA VVEEGQEP EVLRHL++TGG AREPPVYGDLTSPSP
Sbjct:  613 LELAKEGARWLRDYEGWGVGSSAPVVEEGQEPPEVLRHLDQTGGQAREPPVYGDLTSPSP 672
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9592.17611.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.130e-2991.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9592contigE_fasciculatus_S2_contig9592:4678..5515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size252
Hectar predicted targeting categorymitochondrion
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842605.7424166-CDS-E_fasciculatus_S2_contig9592:4677..48221696842605.7424166-CDS-E_fasciculatus_S2_contig9592:4677..4822Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9592 4678..4822 +
1696842605.7533977-CDS-E_fasciculatus_S2_contig9592:5409..55131696842605.7533977-CDS-E_fasciculatus_S2_contig9592:5409..5513Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9592 5410..5513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9592.17611.1prot_E_fasciculatus_S2_contig9592.17611.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9592 4678..5513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9592.17611.1

>prot_E_fasciculatus_S2_contig9592.17611.1 ID=prot_E_fasciculatus_S2_contig9592.17611.1|Name=mRNA_E_fasciculatus_S2_contig9592.17611.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=83bp
ARAGERRCAVAARLRRLGGGVERAGGGGGAGTIRSAATSEPHGGRCKRAA
GLRRSHFAVAATNSRKNRPLLLHAVSDAFARGW
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mRNA from alignment at E_fasciculatus_S2_contig9592:4678..5515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9592.17611.1 ID=mRNA_E_fasciculatus_S2_contig9592.17611.1|Name=mRNA_E_fasciculatus_S2_contig9592.17611.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=838bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9592:4678..5515+ (Ectocarpus fasciculatus EfasUO2)
GCTCGAGCTGGCGAAAGAAGGTGCGCGGTGGCTGCGCGACTACGAAGGCT
GGGGGGTGGGGTCGAGCGCGCTGGTGGTGGAGGAGGGGCAGGAACCATTC
GAAGTGCTGCGACATCTGAACCGCACGGGGGGCGATGCAAGAGAGGTGAG
CTTACCAGAGTTTGAATCAAATATCAAATATGTCTTGAAGGGTTTGATTG
TTTAGGGCGTTTTGGTCATTGCCTATCGTCGGCGTTCACTGTAGAGCAAT
ACGCGGGGGGCTGCGATGTGCGGCGTTCCCATCCTTGTGACAATAATAAG
AGTGCTCACGGTGTGGCTGGCGGCTCCGCTAGCGGAGAAGAGGTGGAAGG
CATGAGGGGTGGTACACTGCTGATGTGTGGTCTTGCCTATTGTAAACTTT
GCTGGTTTCTGCTTTATACTGTCAATGACCCCCACCATTTCTCCTGGTTT
GTGCGATGTAATGGTTTTCATCCGAAGCCGCGGTGGGTGAGACGCTTTTG
TAGAGCACATCACATGTCGCAGATTCGAGATGACACGGGAGATCAGTCTC
GCGTACTAAGCTCTCAGTTAGTGGTACTTCTCAATGGGCAGTGTGTGAGT
GCAGTGTATGCGGTACGTCTTAAGGTGATCGTGCTCCCGTTTTAACCATC
CCATCCTCATCTGTGATAACGCTTCCTTTTTGATCACTCCATCCTCATCT
GCGTTGCCCCGCCCCTTGCTGCCATAAAGCAGCCGCCGGTCTACGGAGAT
CTCACTTCGCCGTCGCCGCCACCAACAGCCGCAAGAACCGGCCACTCCTC
CTTCATGCCGTGTCCGACGCCTTCGCACGGGGGTGGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9592:4678..5515+

>mRNA_E_fasciculatus_S2_contig9592.17611.1 ID=mRNA_E_fasciculatus_S2_contig9592.17611.1|Name=mRNA_E_fasciculatus_S2_contig9592.17611.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=249bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9592:4678..5515+ (Ectocarpus fasciculatus EfasUO2)
GCTCGAGCTGGCGAAAGAAGGTGCGCGGTGGCTGCGCGACTACGAAGGCT
GGGGGGTGGGGTCGAGCGCGCTGGTGGTGGAGGAGGGGCAGGAACCATTC
GAAGTGCTGCGACATCTGAACCGCACGGGGGGCGATGCAAGAGAGCCGCC
GGTCTACGGAGATCTCACTTCGCCGTCGCCGCCACCAACAGCCGCAAGAA
CCGGCCACTCCTCCTTCATGCCGTGTCCGACGCCTTCGCACGGGGGTGG
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