mRNA_E_fasciculatus_S2_contig9590.17609.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9590.17609.1
Unique NamemRNA_E_fasciculatus_S2_contig9590.17609.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9590.17609.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT8_ECTSI)

HSP 1 Score: 490 bits (1261), Expect = 3.880e-168
Identity = 247/258 (95.74%), Postives = 252/258 (97.67%), Query Frame = 1 
Query:  148 MGERRVVLEVQARDGRRLNIETALPGGECTPTTTLKLTLPGLEPSEAASPAASFLRLNRDPANFLLGYLLPDTWLEVEQACRAGRVAVASSGCWTDKGVGDGQGKAVYVRRRRALNRVSRAFQDLRRFARSPASVFNPGATLADTMNAEQRTGVLFPDEARASFLLFDGQARSGWLRSEGVIGGFELLSLAESVDLMLEEACFRGESGPPPEFVPLANRRNSNEWLAAEVGGGRVCVIKPLSRPKVVASSWSHYLRVQ 921
            MGERRVVLEVQARDGRRLNIETALPGGECTPTTTLKLTLP L  SEAASPAASFLRLNRDPAN LLGYL P++WLEVEQACRAGRVAVASSGCWTDKGVGDGQGKAVYVR+RRAL+RVS AFQDLRRFARSP+SVFNPGATLADTMNAEQRTGVLFPDEARASFLLFDGQARSGWLRSEGVIGGFELLSLAESVDLMLEEACFRGESGPPPEFVPLANRRNSNEWLAAEVGGGRVCVIKPLSRPKVVASSWSHYLRVQ
Sbjct:    1 MGERRVVLEVQARDGRRLNIETALPGGECTPTTTLKLTLPALARSEAASPAASFLRLNRDPANLLLGYLAPESWLEVEQACRAGRVAVASSGCWTDKGVGDGQGKAVYVRQRRALHRVSGAFQDLRRFARSPSSVFNPGATLADTMNAEQRTGVLFPDEARASFLLFDGQARSGWLRSEGVIGGFELLSLAESVDLMLEEACFRGESGPPPEFVPLANRRNSNEWLAAEVGGGRVCVIKPLSRPKVVASSWSHYLRVQ 258
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9590.17609.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.880e-16895.74protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9590contigE_fasciculatus_S2_contig9590:1955..5000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2011
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002100.1
Cds size777
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842605.5059457-UTR-E_fasciculatus_S2_contig9590:1954..30411696842605.5059457-UTR-E_fasciculatus_S2_contig9590:1954..3041Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9590 1955..3041 -
1696842605.5536537-UTR-E_fasciculatus_S2_contig9590:4853..50001696842605.5536537-UTR-E_fasciculatus_S2_contig9590:4853..5000Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9590 4854..5000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842605.521853-CDS-E_fasciculatus_S2_contig9590:3041..32811696842605.521853-CDS-E_fasciculatus_S2_contig9590:3041..3281Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9590 3042..3281 -
1696842605.5321925-CDS-E_fasciculatus_S2_contig9590:3843..40111696842605.5321925-CDS-E_fasciculatus_S2_contig9590:3843..4011Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9590 3844..4011 -
1696842605.543067-CDS-E_fasciculatus_S2_contig9590:4484..48531696842605.543067-CDS-E_fasciculatus_S2_contig9590:4484..4853Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9590 4485..4853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9590.17609.1prot_E_fasciculatus_S2_contig9590.17609.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9590 3042..4853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9590.17609.1

>prot_E_fasciculatus_S2_contig9590.17609.1 ID=prot_E_fasciculatus_S2_contig9590.17609.1|Name=mRNA_E_fasciculatus_S2_contig9590.17609.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=259bp
MGERRVVLEVQARDGRRLNIETALPGGECTPTTTLKLTLPGLEPSEAASP
AASFLRLNRDPANFLLGYLLPDTWLEVEQACRAGRVAVASSGCWTDKGVG
DGQGKAVYVRRRRALNRVSRAFQDLRRFARSPASVFNPGATLADTMNAEQ
RTGVLFPDEARASFLLFDGQARSGWLRSEGVIGGFELLSLAESVDLMLEE
ACFRGESGPPPEFVPLANRRNSNEWLAAEVGGGRVCVIKPLSRPKVVASS
WSHYLRVQ*
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mRNA from alignment at E_fasciculatus_S2_contig9590:1955..5000-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9590.17609.1 ID=mRNA_E_fasciculatus_S2_contig9590.17609.1|Name=mRNA_E_fasciculatus_S2_contig9590.17609.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3046bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9590:1955..5000- (Ectocarpus fasciculatus EfasUO2)
CGCACCGCCGTGTTCCTGCTGTCGCTGCGAGTCGGCTGTGTGGCTTGTCT
CTCGAACGCGCGGGAGGTACATCCTCGAGGAGGAGACCATCCGCACCCTC
TGTCACCGAGCTTACCACCCTTTACGTCAAGCAAGTGCTGCGCTGAGATG
GGAGAAAGACGCGTCGTCCTGGAGGTGCAAGCTCGGGACGGCAGGAGGTT
GAACATCGAGACGGCTCTGCCGGGAGGAGAGTGCACACCGACAACAACGC
TCAAGCTCACCCTTCCCGGGCTGGAACCTTCCGAGGCCGCCTCTCCGGCC
GCCTCCTTCCTCAGACTTAACAGAGATCCCGCCAATTTCCTCTTGGGCTA
TCTTCTCCCAGACACTTGGCTGGAGGTGGAACAGGCCTGCAGAGCGGGAC
GAGTCGCGGTTGCGTCCTCCGGGTGCTGGACGGACAAAGGGGTGGGAGAC
GGGCAAGGGAAGGCGGTCTACGTGCGCCGGCGGCGGGCGTTGAACCGCGT
CTCCAGAGCGTTCCAGGTGCGGCAGCGAATACACCTCCTTCTTGCGTTCA
TGTTTAAACGCGGAATTTGCTGCGGAAGAACTCTGTCGTTTGGTCTCTTC
GCGCACTCTCGTATGTGCAAAGGTCCAAGTACAAGTAGTCAGCGCCTCGC
GACTACATACATCTGTAGGCCAGCATATCGTCCGCACGCAGGGTCCCGTA
AGGCCAAGACTTGGTGCCATCGTGGCGCAAGCCTGGTGCTGCCGGGGTAC
GGTGATGTCTTGGCGATCACACGCAAGCGAAAATGGAGTGTAGTTTGCGT
TGTTGCTAACCTTGAATGTATCGGTTGGGAGCACGTCGCTGTCGCCGCTC
TCCGCAACTTGGCAAACCAGGCATCGCACCCGGCAAATGTCATCACTGGC
AAGTCCTCGCCCAATAGGTGGTGAGCTACGACTTACTCTCCTCCCCAATC
TTTCCCTCTCGCTATTTCTCTCTTCCTCCCCGTGAGAAGGACCTCCGCCG
TTTTGCGCGTTCCCCGGCCAGCGTGTTCAACCCCGGCGCGACGCTGGCGG
ACACGATGAACGCCGAGCAGCGGACGGGGGTATTGTTCCCGGACGAAGCC
AGGGCGTCTTTCCTCCTGTTCGACGGCCAGGCTCGCTCTGGATGGCTGCG
CTCGGAGGTGCGCAGTTACGCGGAAGGTCTTGTCTAGTGTGTCGCCGGCA
GCAATGCTTCTTCGCTGTTGATTTTTCGGCGAATCAATACTATTTCTCGT
TAATATTGCGTGTCAAGACGAGATCTGATCTCAAATGTTTCGAAGACGTG
TACTCTTCTTCAACTCGTTGCTCGGCCTGCCATGCAGATCACCTCGATTT
CTCCGTCAACCACCACAGAAGGTGCACCGTACCCACAGCTCTACGGAGGG
AGTAACCTTGTCGAGGCTGCGGCTGCAGCCTTTCGAGAGCTGCCGGCCGA
GAAAGCTAAACCGCCACGGGCAAGACAGCTATCCCCTGTAGCGACAAGCC
CTTCTCCGGAAAGGCGGCGTGTCCATGCCGTCGCTGGCAGTTGCTCATGC
TACCCTTGCTGCCCCGCCCTCTTGTTTGTGCCGCTCGTGACATCCGTACA
TCCCTCCTCTTCCTCTTCCCCACCGCTTCTCGGTCTATGGTCTAACGACT
ACGGCATGCATGATACTGAAATCACCCCCCCCCCACCGCTTCTCCTCCGG
GTGTTAACTTCCGGTGCAGGGCGTTATCGGCGGATTCGAGCTCCTCTCGC
TCGCGGAATCCGTGGACCTCATGCTGGAGGAGGCGTGCTTCCGTGGCGAG
TCGGGACCTCCGCCGGAGTTCGTGCCGCTGGCGAACCGCAGAAATAGCAA
CGAGTGGCTTGCGGCAGAGGTGGGCGGGGGGAGAGTGTGCGTGATCAAGC
CGCTCAGCAGACCCAAGGTGGTCGCGAGCTCCTGGTCCCACTACCTCCGC
GTGCAGTAGAAGTGCGCGATGCGATGTGATTTTCCACACAAAGAGATTGT
AGCTTGCCCCGCGATAGGTGATGGGCGCTTTTTGTATATGTACAAAATTT
TATGTAGATGGCTGCTGTAGTCTTGAGGATGCTGTCGGCTTGTAGATAGC
GCGGCAGACGGAAACGGCCAGACCACGCTCTCCCCCATGTGTTTCGAAGG
TCGGCCAGCCCATGTATCTGCGGAGTTGCATTGGGCAGTTTTGTAGAAAA
TGTATAGGAGTAGTTTGACTTGGCGGAATTACCTAGCACCTGGTTGGTTT
TTGATTATTTCGTTTTGTTTTCCCGCTGCCGGCAAGACGGCTAGCGCTTG
TCCTCTGCGCCGTGCACGTTTTTGGTTGAAGATTGTAAGGGTGAACAATG
GGGTTTTGTGTTTGTAAATATGCATGTGGCGACAATCCGTGGCGGTCTCG
CCTCTACCTGTGGTTTCTAAACTGCATCACCCTCAAAGAATATGATGAGG
AAGGGTATATACATGTTTTGATAGGCTGCTGCCGTCGACTCTCCCCGGAT
TCTGGCTTTATGTTTTTCGTGGACTTCGACACACGGGCGTTGTCGTTGGA
GTAGGAGGCCGCGACGTACTTCGAACATCTCGTTTCGACGCGTGGTCACG
GTTGCCATGTGCAAGTTGATGCCCAGTGCACGTGTTCCGTACGATCCGCT
TTGTACGCATTCTCTGACGACGTACCGTACCAATCTCCAACCTCGGTTTG
TACCCGAAATGTCGATGATCTTAGTGGAACTACATGTAAAGGCGGAGCTA
GCAACGCAGGAGTGTTCGCTAGGACTCAACAGGCGTGTACCTATATTGCG
GTAGAACACGTCTGGTCGAAAGAGGCAATGCCATGTTCCGCTCTGCAACG
TTTCTAGTGTGTCCCGGTTTGTTCGAATGGTGACCGGACACACTCTCAAC
CGCAAAACGGTGCGGGGAGAGCGGGGAGAGGAAAATTGTGGGCGACCCAA
ACAACTCCTGGGGTGAACGCTTTTCCAGAAGAATGAGTATGGCGACCATT
AAGCCATCCATTTTCACAATCGCAATGCGCGCAAAAAAATGGAGCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9590:1955..5000-

>mRNA_E_fasciculatus_S2_contig9590.17609.1 ID=mRNA_E_fasciculatus_S2_contig9590.17609.1|Name=mRNA_E_fasciculatus_S2_contig9590.17609.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=777bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9590:1955..5000- (Ectocarpus fasciculatus EfasUO2)
ATGGGAGAAAGACGCGTCGTCCTGGAGGTGCAAGCTCGGGACGGCAGGAG
GTTGAACATCGAGACGGCTCTGCCGGGAGGAGAGTGCACACCGACAACAA
CGCTCAAGCTCACCCTTCCCGGGCTGGAACCTTCCGAGGCCGCCTCTCCG
GCCGCCTCCTTCCTCAGACTTAACAGAGATCCCGCCAATTTCCTCTTGGG
CTATCTTCTCCCAGACACTTGGCTGGAGGTGGAACAGGCCTGCAGAGCGG
GACGAGTCGCGGTTGCGTCCTCCGGGTGCTGGACGGACAAAGGGGTGGGA
GACGGGCAAGGGAAGGCGGTCTACGTGCGCCGGCGGCGGGCGTTGAACCG
CGTCTCCAGAGCGTTCCAGGACCTCCGCCGTTTTGCGCGTTCCCCGGCCA
GCGTGTTCAACCCCGGCGCGACGCTGGCGGACACGATGAACGCCGAGCAG
CGGACGGGGGTATTGTTCCCGGACGAAGCCAGGGCGTCTTTCCTCCTGTT
CGACGGCCAGGCTCGCTCTGGATGGCTGCGCTCGGAGGGCGTTATCGGCG
GATTCGAGCTCCTCTCGCTCGCGGAATCCGTGGACCTCATGCTGGAGGAG
GCGTGCTTCCGTGGCGAGTCGGGACCTCCGCCGGAGTTCGTGCCGCTGGC
GAACCGCAGAAATAGCAACGAGTGGCTTGCGGCAGAGGTGGGCGGGGGGA
GAGTGTGCGTGATCAAGCCGCTCAGCAGACCCAAGGTGGTCGCGAGCTCC
TGGTCCCACTACCTCCGCGTGCAGTAG
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