mRNA_E_fasciculatus_S2_contig9590.17608.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT7_ECTSI) HSP 1 Score: 303 bits (775), Expect = 5.060e-100 Identity = 190/198 (95.96%), Postives = 193/198 (97.47%), Query Frame = 1
Query: 1 VRVVDTSDDDMSEKLAGVASAASXXXXXXXXXXXXXXXXXXXXXXXMLGQG-APAADEFDLDSMPAPGERGQARRPGKRTTPGKTASELADLGADIERFRRAENRQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGESGDDEDDNR 591
VRVVD+SDDDMSEKLAGVASAASXXXXXXXXXXXXXXXXXXXXXXX GQG APAADEFD+DSMPAPGERGQARR GKRTTPGKTASELADLGADIERFRRAENRQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLG SG+DEDDNR
Sbjct: 177 VRVVDSSDDDMSEKLAGVASAASXXXXXXXXXXXXXXXXXXXXXXXXXGQGGAPAADEFDIDSMPAPGERGQARRAGKRTTPGKTASELADLGADIERFRRAENRQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGGSGNDEDDNR 374
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Y3_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 3.750e-16 Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 1
Query: 271 LGADIERFRR--AENRQPETAGESIASG-AKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVS 552
L AD+ F+R A +++ E AG A G AKDI S I++IDFFVV+ + WF+ G+ YGF +F+LD F + +VQPA+G+LM GTIAGGV+S
Sbjct: 148 LAADLAAFKRTQAPSKKEEDAG---AMGQAKDIFSVILTIDFFVVLGMLGWFLVGIAFRYGFQQSFILDSFKASFDTLVQPAIGLLMLGTIAGGVIS 241
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF1_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.710e-15 Identity = 45/115 (39.13%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 250 TASELADLGADIERFRRAENRQ-PETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGESGDDEDDNR 591
T + +LGADI +++R E P+ + + K I S I++ DFF+V+ F+ W + V++ + LLD F+ W P++QPALGVLM GTIA G VS+L G E D +
Sbjct: 67 TKVNMDELGADIAKYKRREAAAGPKDSSLDAGATLKAIFSWILTADFFIVVGFLGWLVVAVIARSVLKDGSLLDGFSAAWAPIIQPALGVLMAGTIASGTVSQLTGGGGGEGDEQ 181
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYN1_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.730e-13 Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 1
Query: 271 LGADIERFRRAENRQPETAGE-----SIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKL 558
L DI RFR+ E G+ S+A A I+ ++ DFFVV+AF+ WF+ GVV ++ ++D+F D W PV+QPALG+LM GT+ G ++ +
Sbjct: 118 LQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSV 218
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y1F8_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.100e-13 Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 1
Query: 247 KTASELADLGADIERFRRAENRQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGF-SNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGESGD 573
K +E+ DL DI R+ E + E G I AK I+ DFFVV+AF+ WFI G++ YG + + +LD F + +VQPALG+LMGGT+ GG + K+ + D
Sbjct: 61 KLKTEMDDLARDISTLRKKEGLKQEDEG-GIGEFAKGAFVKILLADFFVVLAFLGWFIVGLLQKYGGGAESPILDSFRANFETLVQPALGLLMGGTLLGGALEKINGNDD 169
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWN0_TRICV) HSP 1 Score: 70.9 bits (172), Expect = 4.640e-12 Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 262 LADLGADIERFRRAEN----------RQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSK 555
L L AD ++ R AE+ ++ E G S++ +++ISTI++ DFFVVI +LWF+AG+ SY + + FN+ + PVVQPALGVLM + AG +K
Sbjct: 46 LEALLADAKKMRAAESPEGASSSGVSKEGEEEGFSVSDTIRNVISTIVTADFFVVIGLLLWFLAGIFCSYVLKDDGVQIAFNNIFEPVVQPALGVLMIASAAGAAFNK 153
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TI04_THAOC) HSP 1 Score: 68.9 bits (167), Expect = 7.500e-11 Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 232 RTTPGKTASELADLGADIERFRRAENRQP---ETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGESGDDE 579
RTT LAD A R R ++ P E SI +++STI++IDFFVVI ++WFIAG+ S N + FN + V QPALG+LM G+IAG V + G+S ++E
Sbjct: 103 RTTDDSLEQLLAD--ARSMRTRTSDEASPLKEEETPSSIKDTVFEVVSTIVTIDFFVVIGLLVWFIAGIFCSSVLGNDTVQIAFNMNFEKVTQPALGILMIGSIAGAVGNNDGDSNENE 219
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FHY2_VITBC) HSP 1 Score: 68.9 bits (167), Expect = 1.170e-10 Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 1
Query: 268 DLGADIERFRRAENRQPETA-----GESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTI----AGGVVSKL 558
DL A +E R P A E + A+D +STI+ +DFFVV+ F+LWF+ G +++ F+ + F+ WTPVVQPALG+LM GT+ AG V K+
Sbjct: 141 DLAAAVEAERAKWASLPSRAQQQGQDEGWMTKARDSLSTILVVDFFVVLVFVLWFVFGTIANAAFNAPAAIQAFDLLWTPVVQPALGILMLGTLGSAGAGWVQEKM 246
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2Y0_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.700e-10 Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 250 TASELADLGADIERFRRAENRQPETAGESIASG-----AKDIISTIISIDFFVVIAFMLWFIAGVVSSY-GFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGE 564
+ SE+ +L DI RR E T + G A+ + I+ DF +V+ F+ WFI GV+ Y G + +LD F + +VQPALG+LMGGT+ GG++ KL E
Sbjct: 59 SGSEMNELERDIAALRRRETSVARTRAQDEPEGGLKDFARGAFAKILLADFVLVLGFLGWFIVGVLQKYVGGGASPILDSFRASFETLVQPALGLLMGGTLLGGLLEKLKE 169
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Hypothetical (protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JU94_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 3.120e-10 Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 1
Query: 262 LADLGADIERFRRAEN--------------RQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGG 543
L L AD +R R AE+ + + G SI ++ISTI++IDFF+VIA +LWF+AG+ S + + FN+++ VVQPALGVLM + AGG
Sbjct: 213 LESLLADAKRMRAAESGGDFDADADPSSLEEKEDEGGLSIPKSLGEVISTIVTIDFFIVIALLLWFLAGIFCSSILKDDMVQIAFNNRFESVVQPALGVLMIASAAGG 320 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9590.17608.1 >prot_E_fasciculatus_S2_contig9590.17608.1 ID=prot_E_fasciculatus_S2_contig9590.17608.1|Name=mRNA_E_fasciculatus_S2_contig9590.17608.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=189bp MSEKLAGVASAASGAAGGAASAVSGAAKSAVGAAMSMLGQGAPAADEFDLback to top mRNA from alignment at E_fasciculatus_S2_contig9590:214..810+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9590.17608.1 ID=mRNA_E_fasciculatus_S2_contig9590.17608.1|Name=mRNA_E_fasciculatus_S2_contig9590.17608.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=597bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9590:214..810+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9590:214..810+ >mRNA_E_fasciculatus_S2_contig9590.17608.1 ID=mRNA_E_fasciculatus_S2_contig9590.17608.1|Name=mRNA_E_fasciculatus_S2_contig9590.17608.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=567bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9590:214..810+ (Ectocarpus fasciculatus EfasUO2)back to top |