mRNA_E_fasciculatus_S2_contig9590.17608.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9590.17608.1
Unique NamemRNA_E_fasciculatus_S2_contig9590.17608.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT7_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 5.060e-100
Identity = 190/198 (95.96%), Postives = 193/198 (97.47%), Query Frame = 1
Query:    1 VRVVDTSDDDMSEKLAGVASAASXXXXXXXXXXXXXXXXXXXXXXXMLGQG-APAADEFDLDSMPAPGERGQARRPGKRTTPGKTASELADLGADIERFRRAENRQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGESGDDEDDNR 591
            VRVVD+SDDDMSEKLAGVASAASXXXXXXXXXXXXXXXXXXXXXXX  GQG APAADEFD+DSMPAPGERGQARR GKRTTPGKTASELADLGADIERFRRAENRQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLG SG+DEDDNR
Sbjct:  177 VRVVDSSDDDMSEKLAGVASAASXXXXXXXXXXXXXXXXXXXXXXXXXGQGGAPAADEFDIDSMPAPGERGQARRAGKRTTPGKTASELADLGADIERFRRAENRQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGGSGNDEDDNR 374          
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Y3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.750e-16
Identity = 48/97 (49.48%), Postives = 66/97 (68.04%), Query Frame = 1
Query:  271 LGADIERFRR--AENRQPETAGESIASG-AKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVS 552
            L AD+  F+R  A +++ E AG   A G AKDI S I++IDFFVV+  + WF+ G+   YGF  +F+LD F   +  +VQPA+G+LM GTIAGGV+S
Sbjct:  148 LAADLAAFKRTQAPSKKEEDAG---AMGQAKDIFSVILTIDFFVVLGMLGWFLVGIAFRYGFQQSFILDSFKASFDTLVQPAIGLLMLGTIAGGVIS 241          
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.710e-15
Identity = 45/115 (39.13%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  250 TASELADLGADIERFRRAENRQ-PETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGESGDDEDDNR 591
            T   + +LGADI +++R E    P+ +     +  K I S I++ DFF+V+ F+ W +  V++     +  LLD F+  W P++QPALGVLM GTIA G VS+L   G  E D +
Sbjct:   67 TKVNMDELGADIAKYKRREAAAGPKDSSLDAGATLKAIFSWILTADFFIVVGFLGWLVVAVIARSVLKDGSLLDGFSAAWAPIIQPALGVLMAGTIASGTVSQLTGGGGGEGDEQ 181          
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYN1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.730e-13
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  271 LGADIERFRRAENRQPETAGE-----SIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKL 558
            L  DI RFR+ E       G+     S+A  A  I+  ++  DFFVV+AF+ WF+ GVV     ++  ++D+F D W PV+QPALG+LM GT+  G ++ +
Sbjct:  118 LQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSV 218          
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y1F8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.100e-13
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  247 KTASELADLGADIERFRRAENRQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGF-SNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGESGD 573
            K  +E+ DL  DI   R+ E  + E  G  I   AK     I+  DFFVV+AF+ WFI G++  YG  + + +LD F   +  +VQPALG+LMGGT+ GG + K+  + D
Sbjct:   61 KLKTEMDDLARDISTLRKKEGLKQEDEG-GIGEFAKGAFVKILLADFFVVLAFLGWFIVGLLQKYGGGAESPILDSFRANFETLVQPALGLLMGGTLLGGALEKINGNDD 169          
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWN0_TRICV)

HSP 1 Score: 70.9 bits (172), Expect = 4.640e-12
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  262 LADLGADIERFRRAEN----------RQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSK 555
            L  L AD ++ R AE+          ++ E  G S++   +++ISTI++ DFFVVI  +LWF+AG+  SY   +  +   FN+ + PVVQPALGVLM  + AG   +K
Sbjct:   46 LEALLADAKKMRAAESPEGASSSGVSKEGEEEGFSVSDTIRNVISTIVTADFFVVIGLLLWFLAGIFCSYVLKDDGVQIAFNNIFEPVVQPALGVLMIASAAGAAFNK 153          
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TI04_THAOC)

HSP 1 Score: 68.9 bits (167), Expect = 7.500e-11
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  232 RTTPGKTASELADLGADIERFRRAENRQP---ETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGESGDDE 579
            RTT       LAD  A   R R ++   P   E    SI     +++STI++IDFFVVI  ++WFIAG+  S    N  +   FN  +  V QPALG+LM G+IAG V +  G+S ++E
Sbjct:  103 RTTDDSLEQLLAD--ARSMRTRTSDEASPLKEEETPSSIKDTVFEVVSTIVTIDFFVVIGLLVWFIAGIFCSSVLGNDTVQIAFNMNFEKVTQPALGILMIGSIAGAVGNNDGDSNENE 219          
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FHY2_VITBC)

HSP 1 Score: 68.9 bits (167), Expect = 1.170e-10
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  268 DLGADIERFRRAENRQPETA-----GESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTI----AGGVVSKL 558
            DL A +E  R      P  A      E   + A+D +STI+ +DFFVV+ F+LWF+ G +++  F+    +  F+  WTPVVQPALG+LM GT+    AG V  K+
Sbjct:  141 DLAAAVEAERAKWASLPSRAQQQGQDEGWMTKARDSLSTILVVDFFVVLVFVLWFVFGTIANAAFNAPAAIQAFDLLWTPVVQPALGILMLGTLGSAGAGWVQEKM 246          
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2Y0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.700e-10
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  250 TASELADLGADIERFRRAENRQPETAGESIASG-----AKDIISTIISIDFFVVIAFMLWFIAGVVSSY-GFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGE 564
            + SE+ +L  DI   RR E     T  +    G     A+   + I+  DF +V+ F+ WFI GV+  Y G   + +LD F   +  +VQPALG+LMGGT+ GG++ KL E
Sbjct:   59 SGSEMNELERDIAALRRRETSVARTRAQDEPEGGLKDFARGAFAKILLADFVLVLGFLGWFIVGVLQKYVGGGASPILDSFRASFETLVQPALGLLMGGTLLGGLLEKLKE 169          
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Match: Hypothetical (protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JU94_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.120e-10
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  262 LADLGADIERFRRAEN--------------RQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGG 543
            L  L AD +R R AE+               + +  G SI     ++ISTI++IDFF+VIA +LWF+AG+  S    +  +   FN+++  VVQPALGVLM  + AGG
Sbjct:  213 LESLLADAKRMRAAESGGDFDADADPSSLEEKEDEGGLSIPKSLGEVISTIVTIDFFIVIALLLWFLAGIFCSSILKDDMVQIAFNNRFESVVQPALGVLMIASAAGG 320          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9590.17608.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
Uncharacterized5.060e-10095.96protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT7... [more]
Hypothetical3.750e-1649.48protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Uncharacterized1.710e-1539.13protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized1.730e-1339.60protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Hypothetical2.100e-1340.91protein n=2 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical4.640e-1239.81protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Uncharacterized7.500e-1140.34protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
Uncharacterized1.170e-1040.57protein n=2 Tax=Vitrella brassicaformis TaxID=1169... [more]
Hypothetical1.700e-1037.84protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Hypothetical3.120e-1039.81protein n=2 Tax=Odontella aurita TaxID=265563 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9590contigE_fasciculatus_S2_contig9590:214..810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score71.6
Seed ortholog evalue4.3e-10
Seed eggNOG ortholog159749.K0TI04
Model size597
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CX5Z@1,2RWD5@2759,2XDMX@2836
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002090.1
Cds size567
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842605.453141-UTR-E_fasciculatus_S2_contig9590:213..2431696842605.453141-UTR-E_fasciculatus_S2_contig9590:213..243Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9590 214..243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842605.4747717-CDS-E_fasciculatus_S2_contig9590:243..8101696842605.4747717-CDS-E_fasciculatus_S2_contig9590:243..810Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9590 244..810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9590.17608.1prot_E_fasciculatus_S2_contig9590.17608.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9590 244..810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9590.17608.1

>prot_E_fasciculatus_S2_contig9590.17608.1 ID=prot_E_fasciculatus_S2_contig9590.17608.1|Name=mRNA_E_fasciculatus_S2_contig9590.17608.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=189bp
MSEKLAGVASAASGAAGGAASAVSGAAKSAVGAAMSMLGQGAPAADEFDL
DSMPAPGERGQARRPGKRTTPGKTASELADLGADIERFRRAENRQPETAG
ESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFND
KWTPVVQPALGVLMGGTIAGGVVSKLGESGDDEDDNRQ*
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mRNA from alignment at E_fasciculatus_S2_contig9590:214..810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9590.17608.1 ID=mRNA_E_fasciculatus_S2_contig9590.17608.1|Name=mRNA_E_fasciculatus_S2_contig9590.17608.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=597bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9590:214..810+ (Ectocarpus fasciculatus EfasUO2)
GTGCGCGTGGTGGACACCTCCGACGACGACATGTCCGAGAAGCTCGCGGG AGTCGCTTCCGCCGCCTCGGGGGCCGCGGGAGGCGCCGCCTCCGCCGTGA GCGGCGCCGCCAAGTCCGCGGTGGGCGCCGCGATGTCAATGCTGGGCCAG GGCGCACCCGCGGCCGACGAGTTCGACTTGGACAGCATGCCGGCACCGGG GGAGCGGGGGCAGGCGCGGCGGCCGGGGAAGCGGACGACCCCCGGCAAGA CGGCATCGGAGCTGGCGGACCTGGGGGCGGACATCGAGCGGTTCCGCCGG GCGGAGAACCGGCAGCCGGAGACCGCGGGGGAGTCGATCGCCTCGGGCGC CAAGGACATCATCTCCACCATCATCAGCATCGACTTCTTCGTCGTGATCG CCTTCATGCTCTGGTTCATCGCCGGGGTGGTGTCCTCCTACGGCTTCAGC AACACCTTCCTGCTCGACCAGTTCAACGACAAGTGGACCCCGGTCGTGCA GCCGGCGCTCGGGGTGCTGATGGGAGGCACCATCGCGGGCGGGGTCGTGT CCAAGCTGGGGGAGTCGGGGGATGACGAGGATGACAACCGTCAATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9590:214..810+

>mRNA_E_fasciculatus_S2_contig9590.17608.1 ID=mRNA_E_fasciculatus_S2_contig9590.17608.1|Name=mRNA_E_fasciculatus_S2_contig9590.17608.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=567bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9590:214..810+ (Ectocarpus fasciculatus EfasUO2)
ATGTCCGAGAAGCTCGCGGGAGTCGCTTCCGCCGCCTCGGGGGCCGCGGG
AGGCGCCGCCTCCGCCGTGAGCGGCGCCGCCAAGTCCGCGGTGGGCGCCG
CGATGTCAATGCTGGGCCAGGGCGCACCCGCGGCCGACGAGTTCGACTTG
GACAGCATGCCGGCACCGGGGGAGCGGGGGCAGGCGCGGCGGCCGGGGAA
GCGGACGACCCCCGGCAAGACGGCATCGGAGCTGGCGGACCTGGGGGCGG
ACATCGAGCGGTTCCGCCGGGCGGAGAACCGGCAGCCGGAGACCGCGGGG
GAGTCGATCGCCTCGGGCGCCAAGGACATCATCTCCACCATCATCAGCAT
CGACTTCTTCGTCGTGATCGCCTTCATGCTCTGGTTCATCGCCGGGGTGG
TGTCCTCCTACGGCTTCAGCAACACCTTCCTGCTCGACCAGTTCAACGAC
AAGTGGACCCCGGTCGTGCAGCCGGCGCTCGGGGTGCTGATGGGAGGCAC
CATCGCGGGCGGGGTCGTGTCCAAGCTGGGGGAGTCGGGGGATGACGAGG
ATGACAACCGTCAATAG
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