mRNA_E_fasciculatus_S2_contig959.17607.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig959.17607.1
Unique NamemRNA_E_fasciculatus_S2_contig959.17607.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig959.17607.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.580e-20
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = -3 
Query:  486 GGAVVPAGGAGEGWASYLDEESGRYYWFNEHTGEAYYDEGDGAAAG 623
            GGAV PAGGAGEGWASYLDEESG+YYWFNEHTGEAYYDEGDGAAAG
Sbjct:  264 GGAVAPAGGAGEGWASYLDEESGKYYWFNEHTGEAYYDEGDGAAAG 309
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig959.17607.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.580e-2095.65protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig959contigE_fasciculatus_S2_contig959:19624..20254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size631
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842605.2519715-UTR-E_fasciculatus_S2_contig959:19623..198381696842605.2519715-UTR-E_fasciculatus_S2_contig959:19623..19838Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig959 19624..19838 +
1696842605.2785602-UTR-E_fasciculatus_S2_contig959:20195..202541696842605.2785602-UTR-E_fasciculatus_S2_contig959:20195..20254Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig959 20196..20254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842605.2653558-CDS-E_fasciculatus_S2_contig959:19838..201951696842605.2653558-CDS-E_fasciculatus_S2_contig959:19838..20195Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig959 19839..20195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig959.17607.1prot_E_fasciculatus_S2_contig959.17607.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig959 19839..20195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig959.17607.1

>prot_E_fasciculatus_S2_contig959.17607.1 ID=prot_E_fasciculatus_S2_contig959.17607.1|Name=mRNA_E_fasciculatus_S2_contig959.17607.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=119bp
MGDGWDILSTKAHTTGQLLLQTQVSGTVHPYGVFQLVVRDAMSTVLLTET
KSAMDGCLRNGVGQGSSLNTHTERSTTTTSTTLHKRDRLSASGGAIALIV
VGLPGVLVEPVVPPRLFV*
back to top

mRNA from alignment at E_fasciculatus_S2_contig959:19624..20254+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig959.17607.1 ID=mRNA_E_fasciculatus_S2_contig959.17607.1|Name=mRNA_E_fasciculatus_S2_contig959.17607.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=631bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig959:19624..20254+ (Ectocarpus fasciculatus EfasUO2)
GCCAGGGTCACACAGCGGGAAGGCCATACATGTAGATATGATGACAGTTT
TCTTTGTTTAATCTCGAGCTTGTCCACCTCCTTCTGCTTGGCTTAGCTTT
CTATGCGACGACGATTCAATCGTCTCATTCCCTGGTTGACCTTTTGTGCC
ACTTTCTAAGGCTCCGTTCGAATTACAAAAACAATAGGTCTACGGCTACC
AATTTCTTGCCATGCATGGGGGACGGATGGGATATCTTGTCAACAAAGGC
ACACACGACAGGGCAACTACTACTCCAAACACAGGTATCAGGCACCGTGC
ACCCGTATGGCGTGTTTCAACTGGTGGTTCGTGATGCAATGTCCACCGTA
TTACTTACGGAGACAAAAAGTGCAATGGACGGATGCTTGAGAAACGGTGT
AGGACAAGGGTCTTCACTGAATACACATACAGAACGAAGTACAACCACAA
CAAGTACCACCCTGCACAAGCGTGACAGACTATCAGCCAGCGGCGGCGCC
ATCGCCCTCATCGTAGTAGGCCTCCCCGGTGTGCTCGTTGAACCAGTAGT
ACCGCCCCGACTCTTCGTCTAGGTACGATGCCCACCCTTCCCCGGCACCG
CCTGCCGGCACCACCGCCCCGCCCCCTCCCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig959:19624..20254+

>mRNA_E_fasciculatus_S2_contig959.17607.1 ID=mRNA_E_fasciculatus_S2_contig959.17607.1|Name=mRNA_E_fasciculatus_S2_contig959.17607.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=357bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig959:19624..20254+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGGACGGATGGGATATCTTGTCAACAAAGGCACACACGACAGGGCA
ACTACTACTCCAAACACAGGTATCAGGCACCGTGCACCCGTATGGCGTGT
TTCAACTGGTGGTTCGTGATGCAATGTCCACCGTATTACTTACGGAGACA
AAAAGTGCAATGGACGGATGCTTGAGAAACGGTGTAGGACAAGGGTCTTC
ACTGAATACACATACAGAACGAAGTACAACCACAACAAGTACCACCCTGC
ACAAGCGTGACAGACTATCAGCCAGCGGCGGCGCCATCGCCCTCATCGTA
GTAGGCCTCCCCGGTGTGCTCGTTGAACCAGTAGTACCGCCCCGACTCTT
CGTCTAG
back to top