mRNA_E_fasciculatus_S2_contig958.17600.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig958.17600.1
Unique NamemRNA_E_fasciculatus_S2_contig958.17600.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig958.17600.1 vs.
Match: 5'-deoxynucleotidase (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVA9_ECTSI)

HSP 1 Score: 419 bits (1077), Expect = 9.950e-147
Identity = 219/235 (93.19%), Postives = 223/235 (94.89%), Query Frame = 3 
Query:  120 MSAAGHDSDMNVLPANALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQNVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTQGCFTTPQQVQSWDKELREQRATRRQEEKPSNQPSATTSDSCTKTSGEEGAARGDADTRDPRPGP 824
            MSAAGH +DMNVLPA+ALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQ VSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFEST+GCFTTPQ VQSWDKELREQRA RRQE KPSNQP ATTSDSCTKTS E+GAARGD  T DP P P
Sbjct:    1 MSAAGHGTDMNVLPASALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQ-VQSWDKELREQRAARRQEAKPSNQPPATTSDSCTKTSVEKGAARGDTGTCDPSPDP 234
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig958.17600.1 vs.
Match: 5'-deoxynucleotidase (n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU85_HETAK)

HSP 1 Score: 220 bits (560), Expect = 9.600e-68
Identity = 126/235 (53.62%), Postives = 157/235 (66.81%), Query Frame = 3 
Query:    9 MHLRVCLITIGLVPAHAFLSCRPLPHRRTPFNTARPIMSAAGHDSDMNVLP--ANALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQNVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTQGCFTTPQQVQSWDKELREQRATRRQ 707
            MHLR+  +       HA L    L  R    + A+ + +    D   + L   A ++ F R+VG+LK+LKRTGWV RGV  PESVSDHMYRM+MCSFL++DP +DR    K+A+VHDLAEALAGDI P   VS+ +KRR EE  LD I  T+ S  I  EI++LW EYE  ++ EA  VKDLDK EMI+QAD+YE+GQ  DL EFF+ST+G F T QQVQ WD+ELR QRA R Q
Sbjct:    1 MHLRLHFLV------HALLIAGSLNLRIAHKSLAKMLAANQSGDGSRSALTDAAKSIEFFRIVGQLKKLKRTGWVKRGVDLPESVSDHMYRMSMCSFLLSDPAVDRMWCTKMALVHDLAEALAGDITPHCGVSEAEKRRREEAALDNILETVPSPEIGNEIRELWLEYESGSTPEAIFVKDLDKFEMILQADEYERGQNKDLSEFFKSTEGYFKT-QQVQQWDQELRAQRAARLQ 228
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig958.17600.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQK2_PYTOL)

HSP 1 Score: 210 bits (535), Expect = 8.860e-65
Identity = 106/181 (58.56%), Postives = 139/181 (76.80%), Query Frame = 3 
Query:  165 NALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITD--PTLDRSRIMKLAMVHDLAEALAGDIAPFQNVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTQGCFTTPQQVQSWDKELREQRATR 701
            NA+ F+R+ G+LK+LKRTGWV+  V  PESV+DHMYRM MC  LI +  P+++RS+ +K+A+VHDLAE+L GDI P   V+ EDK R+E+E L++ICAT+G  P A EIK+LW+EYE  TSEEAR+VKD DK EMI+QAD+YE+ Q + L +FF+STQG F TP  V+SW  EL +QR  R
Sbjct:   11 NAIEFLRICGRLKQLKRTGWVNHKVHLPESVADHMYRMGMCCLLIDEVNPSVNRSKCIKMAIVHDLAESLVGDITPHDGVADEDKHRMEKEALEQICATLGDSPAATEIKELWHEYEAGTSEEARMVKDFDKFEMILQADEYERAQNIPLDDFFQSTQGKFRTPL-VRSWVDELIQQREAR 190
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig958.17600.1 vs.
Match: 5'-deoxynucleotidase (n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U169_9STRA)

HSP 1 Score: 209 bits (533), Expect = 4.610e-64
Identity = 115/186 (61.83%), Postives = 139/186 (74.73%), Query Frame = 3 
Query:  150 NVLP---ANALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPF-QNVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQ-GLDLGEFFESTQGCFTTPQQVQSWDKELREQR 692
            NV P   + AL F+RVVGKLK LKRTGWV+  VA PESV+DHMYRMAMCSFLITDP LDR+R+MKLA+VHDLAEAL GDI P  +  +KE KR LEE+ +  I   +G + I+ EI  LW EYED ++ EARVVKD DK EMI+QAD+YE+ Q G +L +FF+ST   F  PQ V+ WD ELR+QR
Sbjct:   50 NVSPPSASQALDFLRVVGKLKTLKRTGWVNNKVALPESVADHMYRMAMCSFLITDPALDRTRLMKLAVVHDLAEALVGDIVPHDERYTKELKRTLEEDAIRSIAGDLGHEGISAEIMSLWLEYEDQSTPEARVVKDFDKFEMILQADEYERSQPGQNLEDFFQSTANAFQHPQ-VREWDAELRKQR 234
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig958.17600.1 vs.
Match: 5'-deoxynucleotidase (n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPL2_9STRA)

HSP 1 Score: 205 bits (522), Expect = 6.530e-63
Identity = 107/184 (58.15%), Postives = 135/184 (73.37%), Query Frame = 3 
Query:  153 VLPANALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQNVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTQGCFTTPQQVQSWDKELREQRATRR 704
            V P+  L F+RVVG LK  KRTGWVHRGV  PESV+DH YRMAMC+FL      DR+R+MKLA+VHDLAE+L GDIAP Q VS EDK R+E E +++I ++IG + IA EI  L+ +YE+  + EA++VK++DK EMIVQAD+YE+ QG +L EFF+ST   F TP    SW+ ELR QR  RR
Sbjct:   12 VEPSKVLDFLRVVGGLKRTKRTGWVHRGVDDPESVADHSYRMAMCAFLADGDAYDRNRVMKLAVVHDLAESLVGDIAPHQKVSNEDKARMELEAMERITSSIGHEAIAAEILDLFTDYEEQRTPEAQLVKEIDKFEMIVQADEYEREQGKELQEFFDSTAASFQTPMMA-SWNAELRRQRDARR 194
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig958.17600.1 vs.
Match: 5'-deoxynucleotidase (n=26 Tax=Phytophthora TaxID=4783 RepID=H3GV42_PHYRM)

HSP 1 Score: 203 bits (517), Expect = 3.600e-62
Identity = 104/187 (55.61%), Postives = 138/187 (73.80%), Query Frame = 3 
Query:  165 NALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDP--TLDRSRIMKLAMVHDLAEALAGDIAPFQNVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTQGCFTTPQQVQSWDKELREQRATRRQEEKP 719
            +A+ F+R+ G+LK LKRTGWV+  VA PESV+DHMYRM MC  L+ D   T++RS+ +K+A+VHDLAE+L GDI P   V++EDK R+E+E LD+IC T+G  P A EI+ LW EYE  ++EEA++VKD DK EMI+QADDYE+ Q + L +FF+ST+G F TP  VQSW  EL  QR  R + + P
Sbjct:   11 SAIEFLRLCGRLKTLKRTGWVNNKVALPESVADHMYRMGMCCMLLDDANETVNRSKCIKMAIVHDLAESLVGDITPHDGVAEEDKHRMEKEALDEICGTLGDTPSAAEIRSLWNEYEAGSTEEAKMVKDFDKFEMILQADDYERAQNIPLDDFFQSTKGKFRTPL-VQSWVAELTSQRTARLESKVP 196
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig958.17600.1 vs.
Match: 5'-deoxynucleotidase (n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K1B0_9STRA)

HSP 1 Score: 201 bits (512), Expect = 2.120e-61
Identity = 102/181 (56.35%), Postives = 137/181 (75.69%), Query Frame = 3 
Query:  165 NALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPT--LDRSRIMKLAMVHDLAEALAGDIAPFQNVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTQGCFTTPQQVQSWDKELREQRATR 701
            NA+ F+R+ G+LK LKRTGWV+  VA PESV+DHMYRM+MC  L+ D    ++RS+ +K+A+VHDLAE+L GDI P   V++EDK R+E+E LD+IC+ +G  P A EI++LW EYE  ++EEA++VKD DK EMI+QADDYE+ Q + LG+FF+ST+  F TP  VQSW +EL  QR  R
Sbjct:   11 NAIEFLRLCGRLKTLKRTGWVNNKVALPESVADHMYRMSMCCMLLDDDNKAVNRSKCIKMAIVHDLAESLVGDITPHDGVAEEDKHRMEKEALDEICSKLGDTPSAAEIRELWAEYEAGSTEEAKMVKDFDKFEMILQADDYERAQNIPLGDFFQSTKDKFRTPL-VQSWVEELTTQRNAR 190
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig958.17600.1 vs.
Match: 5'-deoxynucleotidase (n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6A0_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.480e-61
Identity = 103/187 (55.08%), Postives = 139/187 (74.33%), Query Frame = 3 
Query:  162 ANALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLI-TDPTLDRSRIMKLAMVHDLAEALAGDIAPFQNVSKEDKRRLEEEGLDKICATIGSDP-IALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTQGCFTTPQQVQSWDKELREQRATRRQEEK 716
            ++AL F+RV G LK LKRTGWV+  V  PESV++HMYR+AMCS L+  D ++DR + MK+A+VHDLAEA  GDI P   VS EDK ++E++ +D+IC  +G++   A EI++LW+EYE+ ++EEA++VKD DK EMI+QAD+YE  QG+DL +FF ST+G F TP  VQSW  EL  QR TR+   K
Sbjct:    9 SSALEFLRVCGALKRLKRTGWVNHKVESPESVAEHMYRLAMCSLLLDNDSSVDRMKCMKMAIVHDLAEAFVGDITPHDGVSDEDKHKMEKDAIDEICTKLGAESEAAKEIRELWHEYENASTEEAKMVKDFDKFEMILQADEYENAQGVDLQDFFNSTKGKFKTPL-VQSWVSELNAQRDTRKSNSK 194
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig958.17600.1 vs.
Match: 5'-deoxynucleotidase (n=2 Tax=Phytophthora TaxID=4783 RepID=G4ZR71_PHYSP)

HSP 1 Score: 199 bits (507), Expect = 9.950e-61
Identity = 103/186 (55.38%), Postives = 138/186 (74.19%), Query Frame = 3 
Query:  165 NALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDP--TLDRSRIMKLAMVHDLAEALAGDIAPFQNVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTQGCFTTPQQVQSWDKELREQRATRRQEEK 716
            +A+ F+R+ G+LK LKRTGWV+  VA PESV+DHMYRM+MC  L+ D   T++R + +K+A+VHDLAE+L GDI P   V++EDK R+E+E LD+IC T+G  P A EI+ LW EYE  ++EEA++VKD DK EMI+QADDYE+   + L +FF+ST+G F TP  VQSW +EL  QR  R  +EK
Sbjct:    9 SAIEFLRLCGRLKTLKRTGWVNNKVALPESVADHMYRMSMCCMLLDDANETVNRPKCIKMAIVHDLAESLVGDITPHDGVAEEDKHRMEKEALDEICNTLGDTPSAAEIRSLWNEYEAGSTEEAKIVKDFDKFEMILQADDYERAHNVPLDDFFQSTKGKFRTPL-VQSWVEELTTQRDARLGKEK 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig958.17600.1 vs.
Match: 5'-deoxynucleotidase (n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY03_PLAHL)

HSP 1 Score: 198 bits (504), Expect = 2.830e-60
Identity = 102/180 (56.67%), Postives = 133/180 (73.89%), Query Frame = 3 
Query:  168 ALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPT--LDRSRIMKLAMVHDLAEALAGDIAPFQNVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTQGCFTTPQQVQSWDKELREQRATR 701
            A+ F+R+ G LK LKRTGWV+  VA PESV+DHMYRM+MC  L+ D    L+RS+ +K+A+VHDLAE+L GDI P   +++E K R+E+E LD IC+T+G  P ALEI++LW EYE   +EEA++VKD DK EMI+QAD+YEK Q + L +FF+ST+G F TP  VQSW  EL  QR  R
Sbjct:   10 AIEFLRLCGSLKTLKRTGWVNNKVAMPESVADHMYRMSMCCMLLEDANEALNRSKCIKMAIVHDLAESLIGDITPHDGIAEEVKHRMEKEALDNICSTLGDTPSALEIRELWNEYEAGLTEEAKMVKDFDKFEMILQADEYEKAQNISLDDFFQSTKGKFRTPL-VQSWVSELSTQRNAR 188
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig958.17600.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
5'-deoxynucleotidase9.950e-14793.19n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVA9_ECTSI[more]
5'-deoxynucleotidase9.600e-6853.62n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7... [more]
Uncharacterized8.860e-6558.56protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
5'-deoxynucleotidase4.610e-6461.83n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID... [more]
5'-deoxynucleotidase6.530e-6358.15n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1... [more]
5'-deoxynucleotidase3.600e-6255.61n=26 Tax=Phytophthora TaxID=4783 RepID=H3GV42_PHYR... [more]
5'-deoxynucleotidase2.120e-6156.35n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=... [more]
5'-deoxynucleotidase2.480e-6155.08n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0... [more]
5'-deoxynucleotidase9.950e-6155.38n=2 Tax=Phytophthora TaxID=4783 RepID=G4ZR71_PHYSP[more]
5'-deoxynucleotidase2.830e-6056.67n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig958contigE_fasciculatus_S2_contig958:4748..8666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score421.4
Seed ortholog evalue3.2e-115
Seed eggNOG ortholog2880.D7FVA9
Preferred nameHDDC2
Model size827
KEGG rclassRC00002
KEGG koko:K07023,ko:K07198,ko:K13800,ko:K14638
KEGG TC2.A.17.3
KEGG ReactionR00158,R00512,R01665,R11891,R11892
KEGG Pathwayko00240,ko00983,ko01100,ko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,ko05418,map00240,map00983,map01100,map04068,map04140,map04150,map04151,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410,map05418
KEGG ModuleM00052
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004675,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0019199,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030431,GO:0032501,GO:0036211,GO:0038023,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564
Exons7
EggNOG free text desc.HD domain
EggNOG OGsCOG1896@1,KOG3197@2759
Ec32 ortholog descriptionHD domain
Ec32 orthologEc-14_000400.1
EC2.7.11.11,2.7.4.14
Cds size819
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko03029,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig958.17600.1prot_E_fasciculatus_S2_contig958.17600.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig958 4748..8658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.7399263-CDS-E_fasciculatus_S2_contig958:4747..49211696842604.7399263-CDS-E_fasciculatus_S2_contig958:4747..4921Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 4748..4921 -
1696842604.7536585-CDS-E_fasciculatus_S2_contig958:5375..54371696842604.7536585-CDS-E_fasciculatus_S2_contig958:5375..5437Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 5376..5437 -
1696842604.7635384-CDS-E_fasciculatus_S2_contig958:5789..59061696842604.7635384-CDS-E_fasciculatus_S2_contig958:5789..5906Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 5790..5906 -
1696842604.7733572-CDS-E_fasciculatus_S2_contig958:6231..63861696842604.7733572-CDS-E_fasciculatus_S2_contig958:6231..6386Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 6232..6386 -
1696842604.7854884-CDS-E_fasciculatus_S2_contig958:6810..68791696842604.7854884-CDS-E_fasciculatus_S2_contig958:6810..6879Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 6811..6879 -
1696842604.7965798-CDS-E_fasciculatus_S2_contig958:7619..77311696842604.7965798-CDS-E_fasciculatus_S2_contig958:7619..7731Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 7620..7731 -
1696842604.8076954-CDS-E_fasciculatus_S2_contig958:8528..86581696842604.8076954-CDS-E_fasciculatus_S2_contig958:8528..8658Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig958 8529..8658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.818576-UTR-E_fasciculatus_S2_contig958:8658..86661696842604.818576-UTR-E_fasciculatus_S2_contig958:8658..8666Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig958 8659..8666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig958.17600.1

>prot_E_fasciculatus_S2_contig958.17600.1 ID=prot_E_fasciculatus_S2_contig958.17600.1|Name=mRNA_E_fasciculatus_S2_contig958.17600.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=273bp
MHLRVCLITIGLVPAHAFLSCRPLPHRRTPFNTARPIMSAAGHDSDMNVL
PANALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDP
TLDRSRIMKLAMVHDLAEALAGDIAPFQNVSKEDKRRLEEEGLDKICATI
GSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDL
GEFFESTQGCFTTPQQVQSWDKELREQRATRRQEEKPSNQPSATTSDSCT
KTSGEEGAARGDADTRDPRPGP*
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mRNA from alignment at E_fasciculatus_S2_contig958:4748..8666-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig958.17600.1 ID=mRNA_E_fasciculatus_S2_contig958.17600.1|Name=mRNA_E_fasciculatus_S2_contig958.17600.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3919bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig958:4748..8666- (Ectocarpus fasciculatus EfasUO2)
AACATCAAATGCACCTCCGCGTATGCTTGATAACAATAGGCTTGGTGCCA
GCACACGCGTTTCTCTCTTGCAGACCCCTTCCTCATCGCCGAACCCCGTT
CAACACCGCCAGACCAATCATGTCTGCAGCCGGACACGGTGAGAAAATCA
CATGTTTTATGAAAATTAAATTTGAATTTCACGCCTGCCTGCCCTCCTGA
TAGACTAATGATGAATGCCTCGATGCGGTCAGTCCTCATGGACGATGCAT
GTATTGCAAGAAGGATGCGCACGCCGAAATACTGCCGGGAATCTAAGTGA
TGAGATATTGCTACCCGATATTTCATTTGATGGTGAGTAGGCGTCAATCA
GCACCTATCGCGACGCTAATGAGATAAAGGCGGTGTCCATTGTCTCCTTC
GGGGGGGGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAACAAAACCCCCCCAACAAANNNNNNNNNNTATTTTGCGGTGGGGT
GGGCGCCTCCACAAGCTCAGCCCCGCTGGTCTAGAGAGGGGGCTGGGCTG
TGTCCCCGTCGGGGGGGGGGGGGGGGGGGGGGGGGGTGATATATTACATC
ACACACCTTCGACGACTATGGTCTCGCTCCGCCCCCCCTTCGCTCGGTCC
CGGCGTTGAGGGAAGTGAGATCTATGCATAGTCTATGGTGTTCTTTGCGT
ACGGCACACATTTCCAACAGCTTGTGTGTTGTGCAACAAGAACATTCGAG
CCAGCAACTGTCCTCATTGTTGATTGTAACAAACGGAGTGGATTTTCGTA
TCAAGAGGACGCGCTCCCCGCTGGGTGCACCAACAAAGAAGCGCCCGTCG
ATTTGCTTACCAGAACAGCCCCTGCCGTTAAAATATTTATTTTGCGAGAT
CTCAAGTGCTTTGCTTGTCTGTTTTGTGTACCAAGACTCGGACATGAACG
TGCTTCCGGCCAACGCGTTGTCGTTCATGAGAGTGGTGGGCAAGCTGAAG
GAGCTCAAGAGGACCGGCTGGGTACATCGAGGAGTTGCAAAACCAGAGTG
AGCCCGACATAGGCTAATGCACTGCCGCATAGTTAGTAGTGGTGTTTAAT
ACATACGGCTCGCAAAGCTGTGCGTCGCAGATACAGGCACAAACGGCGTA
ATGCGCGTAATGCGCAGGTACGTGTCACAGTCATGGACAAGGGCAGAAGC
GGTGTACCGTACGTGACACAAGATACCACACCCCCTGAGCCTGTTTTCAA
AGCCCAATTTCTCCATAGCATAATAACTAGCAGCGCCGAAAACGGCGGCG
TTGGAGCCGTCTCGTCGAGAGCTTTCCCATAACGTGTCGTTTCAGTTCTT
TATTCTCTTCATCGTGGAGTAATCGAGCTATAATAGTTTTGAATATCGGT
CCAGGGGGTGTGATATCTTGTGTCACCTACGGTAGTCGCACGTAAGGCGC
AGGCATGCACGGTGCGGAGTGTCATCACGGTGTCTCAACCGTAGTCCGTG
CAAGATGCCTACTATTGCACTATTGCTACTATTGCAACAGGTCACCGGTA
CTGAAACGCACAGTTGTCGAGTCGAGTAGTAGGTTCCACAGGTGTGCTGG
GCTCTTCGTTTGGTACATCCAGTTTGGTAGCCTACAATACATATCCACGA
TTAGCCTGACCAAAGTAAGGAAAATGTGCACGTTGGGTAATTAATCACTA
CTGGAGAACATGTAGCGCCCATACCATCCACTGAATTAATTCAACTAATC
TCTTCCACCAATCGTGACCTATTCGATTGCAAGCCAGGTCGGTGTCCGAT
CACATGTATCGCATGGCAATGTGCTCCTTCCTCATCACGGACCCGACGTT
AGATCGGTAAGTCCCGGTTCGTGTGTGATCGCTTGGTACCCAACAACATC
AAGCACAGCAGTTTTGTGTACTACACAGCAGTCGGTACTTGGTCTCTTGC
AGCAATCAGGTAATTGTAGTAAGTATAGTATAATAGTGCTGTCGTCAGCG
AGATATCTACAGCGGCGCCGTCCTCTACATAGATTGACCTATGGACGTTA
CGTTTGCACGTTGAAATAAGTAAGAAGCTTCGAGAGGTCGCCAGTACAAC
CAGTTCTACTTGACGTTGCAAGCATCTGTAAGGCTGTAAGGGAGTGCCCG
TATAAACGTGTGCGTAGTGCTGCCCGGTACCGCCTATAATAGTTGTTCTC
GAGACCAGTAGACCGCGTGTGTCTCATCATCATTCTGGCCCCTTCTTGTT
TCTCGTGGGGTAACTTTAACGACTAACTAGGTCGCGCATTATGAAACTGG
CGATGGTACACGATCTCGCCGAAGCGCTGGCAGGAGACATCGCGCCCTTC
CAAAACGTCTCCAAGGAGGACAAGCGTCGCCTGGAGGAGGAAGGGCTAGA
CAAGATATGCGCAACGATTGGCAGCGATCCCATCGGTGCGCGGCCGGCTT
AGGGCTGATGGCGTGTCGTGTGGTCTAATTACAGTAGAGTGCGTGTGATG
TGTGACAGCTATCGAGTGCCAAGTGTGGGACATGTGGCTAACGTTAAGCC
TGAGGTCTTTCCTTGGTGCTGTCAAGCTAAATGGAAGTAGATACTTCGCA
CCATGAGAAGCTTAAGCTTATCCTTCGAGGGAGGCAGGGCACAATCGCAG
AGTCGTGTCATTGCTTGCTGCAGCTGCTGTCGCAGCCTAGGGCCACGTCG
AGGGCAACCTCCGGTGACATCTGATATTTGGTGTCGTCTGTTGCTTCGGT
GTGTCCACAGCTCTCGAGATAAAAAAGCTGTGGTATGAGTACGAAGACTG
CACATCCGAGGAGGCGAGGGTGGTCAAGGATTTGGACAAGCTGGAGATGA
TTGTCCAGGCAGACGACTACGAAAAAGGTGAGTTAATGTGTTGCGGTCCT
CGCCACGCGATAAGCAGCGATCACGTTTTACCCTCGATCGTTTTGTATCA
CCTCGGTTCAACTCAGGCTCGTACAATAGAGTGGGTCGGTCATCCACAAT
CAAACTCGAATATTTTGCAGGCGGGGTTGTGCAACTTACAGTCCATTGTT
CACCCCAACAACCAGTTGTAGAGCTTTTCATGAGTACGAAAATGCGAAGT
CATGCCATGCTTGATGAAAGTGACATGGTCCTTTTGTTGCTCATACGCGC
GCCCTCCCTATCTCGGCTATCTTCCAACTATTAGACTGATGCCGTCCCTC
CTCCTACTCTATCCTTTGCGAGGATGCAGGTCAGGGGCTCGACCTGGGCG
AGTTTTTCGAGAGCACCCAAGGGTGCTTCACCACCCCCCAGGTGAACATA
CGCTTCTCTCCTCTCCTCTCCTCTCCACTTCTCTCAGATGCGCTCGGTCG
CTGCTGTTTGTCGGCGTGATGTTTCAAACGAGTACTTTTTCCAGCAGGGG
CGTAGTACACGATACGCATAGCACAGTCGTTCAACGACAAAGGCGTTCTT
GTTCAGCCAGTGTTGCAATTGGCTGAGGTGCTGCACGTGAGTGTTTGCCT
TGAGGATGCTTGAATCGGTCCGATGAAACTGAATCGTGGCATGCAATTGA
CCTGCTTGGCTTTGCCGAACGTCCTCGACCTTGTCTTCGCTCAGTGTACG
GTTGGTTCTACATGGAAGGCTAGCCATGTGCTTACACAGCAGTTCGCGCT
CTGTTATTCGTGTTGTGAGAATCAGAATTGCCTGCTCATCGACGTTATGG
TACGTATGCTTCGTGCTGGTATGCGATTCCTTTCCTCTTGACAAGCAGGT
ACAGTCGTGGGACAAGGAGCTGAGGGAGCAAAGGGCGACCCGTCGGCAAG
AAGAAAAACCATCTAATCAGCCATCAGCAACGACATCAGATTCGTGCACG
AAAACCTCGGGCGAGGAGGGCGCAGCAAGAGGGGATGCGGACACCCGCGA
CCCTCGCCCAGGCCCTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig958:4748..8666-

>mRNA_E_fasciculatus_S2_contig958.17600.1 ID=mRNA_E_fasciculatus_S2_contig958.17600.1|Name=mRNA_E_fasciculatus_S2_contig958.17600.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=819bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig958:4748..8666- (Ectocarpus fasciculatus EfasUO2)
ATGCACCTCCGCGTATGCTTGATAACAATAGGCTTGGTGCCAGCACACGC
GTTTCTCTCTTGCAGACCCCTTCCTCATCGCCGAACCCCGTTCAACACCG
CCAGACCAATCATGTCTGCAGCCGGACACGACTCGGACATGAACGTGCTT
CCGGCCAACGCGTTGTCGTTCATGAGAGTGGTGGGCAAGCTGAAGGAGCT
CAAGAGGACCGGCTGGGTACATCGAGGAGTTGCAAAACCAGAGTCGGTGT
CCGATCACATGTATCGCATGGCAATGTGCTCCTTCCTCATCACGGACCCG
ACGTTAGATCGGTCGCGCATTATGAAACTGGCGATGGTACACGATCTCGC
CGAAGCGCTGGCAGGAGACATCGCGCCCTTCCAAAACGTCTCCAAGGAGG
ACAAGCGTCGCCTGGAGGAGGAAGGGCTAGACAAGATATGCGCAACGATT
GGCAGCGATCCCATCGCTCTCGAGATAAAAAAGCTGTGGTATGAGTACGA
AGACTGCACATCCGAGGAGGCGAGGGTGGTCAAGGATTTGGACAAGCTGG
AGATGATTGTCCAGGCAGACGACTACGAAAAAGGTCAGGGGCTCGACCTG
GGCGAGTTTTTCGAGAGCACCCAAGGGTGCTTCACCACCCCCCAGCAGGT
ACAGTCGTGGGACAAGGAGCTGAGGGAGCAAAGGGCGACCCGTCGGCAAG
AAGAAAAACCATCTAATCAGCCATCAGCAACGACATCAGATTCGTGCACG
AAAACCTCGGGCGAGGAGGGCGCAGCAAGAGGGGATGCGGACACCCGCGA
CCCTCGCCCAGGCCCTTGA
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