mRNA_E_fasciculatus_S2_contig9576.17595.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9576.17595.1
Unique NamemRNA_E_fasciculatus_S2_contig9576.17595.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9576.17595.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ38_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 2.550e-101
Identity = 214/359 (59.61%), Postives = 233/359 (64.90%), Query Frame = 1 
Query:  154 MVTPLTLRLSPQQQGDLR---DDQAPQSLWQPPHHLRRQSSALKRTAVEAKLAGNG--GQRAGTPPLEVAVTPATGAAVSTTTSAILFPALRVVLEDRVGGRRWLGSVRELQTVCFEACKECRKVVPVRLRVSDGTPDHLWKQGTTAERAMAAAKVXXXXXXXXXXXXXXXXXXXSGG--------IESYGSGSSGDGGCFDFDLDGAPGSEVDSEDAAASDVDG--------SECSWSLPNLWGREEAAIEDRRESIPSPYSSPGRDVPPVRIMGMVWERSTLAKISFGRPELPEMAFGAAVIEPLHGAAWASALKRITLGSKDWNLPPATAMLDAEGGDKNWPPSLEELTFGEHFNA 1167
            M TP    L P +QG LR     Q  QS W    HLRR SSALKRTAVEA L  NG  GQR   P L V    ATGAAV TTTSA+LF ALR+VLEDRVGGR WLGSVRELQ+VCF+ACKECRKVVPVRLRVSD TP HLW++ TTA++AMA               XXXXXXXX           IESYGSGSSG   C                                 SECSWSLP+LW RE AAIE R ++IPSPYS P RDVPP+RI GMVWERS LAK SFGRPELPE AFG A IEPLHGAA  + LKRITL SK+ +LP  T MLDA+ G+ NWPPSL+ELTFGE FNA
Sbjct:    1 MATPPAPWL-PHRQGGLRRLRHYQVQQSRWH--SHLRR-SSALKRTAVEANLEDNGEAGQRTRAPTLAVR---ATGAAVRTTTSALLFSALRMVLEDRVGGRGWLGSVRELQSVCFDACKECRKVVPVRLRVSDSTPGHLWRKETTADKAMAETTAEAVAELEPGGSXXXXXXXXXXXXXXXKRSVIESYGSGSSGSN-CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSECSWSLPSLWERE-AAIETRTDTIPSPYSPPDRDVPPLRIAGMVWERSALAKASFGRPELPEAAFGMAAIEPLHGAACTTTLKRITLSSKNSHLP-TTVMLDAKDGEINWPPSLKELTFGERFNA 349
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9576.17595.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW9_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 5.690e-37
Identity = 69/91 (75.82%), Postives = 76/91 (83.52%), Query Frame = 3 
Query:  795 VQLESPQLVGKGGGGDRGQKRIDSFPVLFAGQRCPPCEDHGHGVGAQHAGEDFLWPSRAAGDGVRGRGDRALARGGLGVRAEADHPRLKGL 1067
            +QLESP LVGKGG  DRGQ+RID FPV   GQRCPP +DHGH VGAQHAGE FLW SRAAG G+RGRGDRALARGGL V AEA+HP+L+ L
Sbjct:    1 MQLESPLLVGKGGS-DRGQERIDPFPVCSTGQRCPPSQDHGHCVGAQHAGEGFLWLSRAAGGGLRGRGDRALARGGLHVHAEANHPQLEEL 90
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9576.17595.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.550e-10159.61protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.690e-3775.82protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9576contigE_fasciculatus_S2_contig9576:2185..5752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1168
Hectar predicted targeting categoryother localisation
Exons3
Cds size1014
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.2733319-UTR-E_fasciculatus_S2_contig9576:2184..22821696842604.2733319-UTR-E_fasciculatus_S2_contig9576:2184..2282Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9576 2185..2282 +
1696842604.284139-UTR-E_fasciculatus_S2_contig9576:2974..30291696842604.284139-UTR-E_fasciculatus_S2_contig9576:2974..3029Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9576 2975..3029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.2932925-CDS-E_fasciculatus_S2_contig9576:3029..31891696842604.2932925-CDS-E_fasciculatus_S2_contig9576:3029..3189Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9576 3030..3189 +
1696842604.3091357-CDS-E_fasciculatus_S2_contig9576:4898..57521696842604.3091357-CDS-E_fasciculatus_S2_contig9576:4898..5752Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9576 4899..5752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9576.17595.1prot_E_fasciculatus_S2_contig9576.17595.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9576 3030..5752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9576.17595.1

>prot_E_fasciculatus_S2_contig9576.17595.1 ID=prot_E_fasciculatus_S2_contig9576.17595.1|Name=mRNA_E_fasciculatus_S2_contig9576.17595.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=338bp
MVTPLTLRLSPQQQGDLRDDQAPQSLWQPPHHLRRQSSALKRTAVEAKLA
GNGGQRAGTPPLEVAVTPATGAAVSTTTSAILFPALRVVLEDRVGGRRWL
GSVRELQTVCFEACKECRKVVPVRLRVSDGTPDHLWKQGTTAERAMAAAK
VVVAAAELEPGGGGGGGGGGSGGIESYGSGSSGDGGCFDFDLDGAPGSEV
DSEDAAASDVDGSECSWSLPNLWGREEAAIEDRRESIPSPYSSPGRDVPP
VRIMGMVWERSTLAKISFGRPELPEMAFGAAVIEPLHGAAWASALKRITL
GSKDWNLPPATAMLDAEGGDKNWPPSLEELTFGEHFNA
back to top

mRNA from alignment at E_fasciculatus_S2_contig9576:2185..5752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9576.17595.1 ID=mRNA_E_fasciculatus_S2_contig9576.17595.1|Name=mRNA_E_fasciculatus_S2_contig9576.17595.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3568bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9576:2185..5752+ (Ectocarpus fasciculatus EfasUO2)
GTCTGGTGGGGGCCATCGAGATAGCAGCTCACACTCCTTCTCTTTCTCAG
GCGCAGCAGCAGCGGACGAGGGCCCACGCGCAGCGGCGACGCTCGAAGGT
GAGAGCTCTGCCGTGCTCAGAGTATCTACATGTATCGAACGGCATGACGA
CATGGCCACACGGATCTAATCTGCACCTGCTGTGGTGTGTGTTTTTAGGG
CTCTTTCTCGATGTTTTTGGTTGCATCACAAAGAGCAGGGCCGCTTGTTG
CTTGCCGCGCCAGCAACCCTGCGGACGGAACTCATCGTGCCGGGCAGCAG
CGGAATCAAGCGTATGCTCTTGGGTTTCAAGCTTGTCACACATGGCAGCA
TCAGCGCACTGGATTAGTTAGTGGGCGGTGTTACAGCGTCGTGCGTGAGT
AAGTTACGGTAGCACGCATCTTGCTCATGGGTGAGCTCGTGAGAGCGGGA
CAAATATGCCGATTGAATCCCGAGAACAAATCATTTGGCACACGATACCC
GTTTCCGACCCCGGGCGTCATCATCTATCTGTGTCTAGACCATGCTACTG
CTTTGTCGCCTCAAAACGGGCTCAAGAAACGCAGCCATGAGCGCTCTGCG
CTGCTGTGTTGCGCATGCTCTCCGCGTGTACGCCAAGCGATAGCCGAATG
TATGGATACCGGAATTGAATCGACAAAATGACAGCGCAGCGAGTACCATA
GTTGAGCAGTTGAGCGGACGTCTACCGTTCGTCCGTTTTACGGCCCTAAA
AGATCGTTGTCTCCTTTCTCTACAACGATCCATTCCTCAGCCGGCGACCG
GCAAAAGGCCGCAGCTAACTGTCAAGGGGGAGACGGTGGGCGTACATGGT
GACGCCACTGACCCTCAGGCTATCGCCGCAGCAGCAGGGAGACCTTCGCG
ATGACCAGGCCCCGCAGTCTCTATGGCAACCACCGCATCATCTCCGGCGG
CAGTCTTCAGCATTGAAGCGGACCGCGGTGGAGGCTAAACTAGCGGGAAA
TGGCGGTGAGAGCTCGTGTTTATTTTCCTGGAAAGAAACTCATCTCGTCA
CGATATACCATGGTACTTGAGCGCATGCAATAAAAGTCGGTGACACACCG
GCGCTCCGCTCACAGACAGCAAGAGAGACCTGACGACGGTGTAGTCTAAT
ATGAAAACCGTTTTATGTATCGGCCAAGCGTGCGCTCAACGGTCGGCAAC
GAGTGTTGCGCCCTCGCCGCGCACCCGACCGAGATGCCCGGCAAGACTCC
GTATGTGTGTCAGAAAAGCAGAAAAGGGAAGTAAATGCGTAGATGTAGGG
TCGTATGTAAAAGATCGATGTTGCTCCACAACCAAAAGGGTGCGAAACCT
GTGAACGACACACGCAAGGAGAGTTTTCGACCAGACCGCTCCAATCCCAC
TGTTGTAGTCACCATTTACCGTCTCATCTTGGTCGGGGCGCAGTCGAGAT
TTGCACCGGTTGGATCGCATACACTCCTGTACGTGGCCCGCACTTGGACG
TAAGGTTTAAACATGTGCGCGCATGCATGTGCGAGAGCTTTTTCGCCTCT
TTTGTATGCTTTTCCCGTCAGGTATTATTATACCTCTTCGACAGACAGGA
GTCACACACCGACCATCGCGCGAGCGTTGTGTTAGTACGTCCGGACGACT
GGATGGCGCGAGTGGTGCCGAGCCGCGTAGTGGTCGTTTTTGTTAACGTT
GATTGCGATCAGGTCGTCATTTTTTCGCCAATAATACACCTGACCGTGCC
TACATGCATCCCCAGCTGGCCCCCAGGCAAACACACAGACAGCTTGGCTC
ACACAGAGTTGCCGAGAGAGCTTTGAGCACCCTGACAAGAACTTATATTG
TAGCGTGTAGCCATGGGTGAAAGTGGGTAAGTACAGAAGAATTGTAGTGC
GGTGCTTCGAGCGGCAACTACGGGCAGCACATACCGCCGTGCTTTGTTGG
AAGCAAACGTCTACGACTCTCTACTTGAAGCGTACGGACTTGTAGGATAT
ACACGCATCCGCTGTTGCGGGGATCTTTGCCCGCGTGCACGCCCTTCAGT
GCCATCCGAGCATTGTCCGTCGAATTCCAACGTAGTCTAGCCCGTTTGCC
CATGATGATGGCGGGGCACCGTGACCGCCTCTGTTTCCAACGAGCTGTCC
AGCCGCTGCAGATGCAGCCGCCCCGCCAGCTTCAATCTACTGTGCGAGCA
CAAAATTATTTGCAGCAAGCGGTGATGTTTGTCCTCAATTTGTGCCCCCC
CATCCTGACAATCTAGACATCACCGGAGGAAACATAATTTTCCGACGGCA
GCAAGCGCGCTTTACCAAAATTCTTGGCAAATCGTTTCTGGAGGCGGGTA
TCAGACGAAGCCGCAACGGTTGACGTGCGGACGTCAATACTGTGCGGGGA
GTCGGGGCGTTCTACAAATCGCCAAGGTTCCGCCAGAAGAAATATCTCGC
CCCTCCGCTCCTCGAGGACCTTGCCGCCCAACCCCTCACGTACGGAAGAT
GGGCTACTTTCCAACAGCGGTCATCCACGATGTCTACCTCACGCGCTTTG
CATCCCTCCCCCCCCAAGTGTTTGTCTGTGAGTTGCCCTACCGTTGCCCC
CCTCGTTATCAGTTCAGCAGCATGCGTTCCTTGCTCAGCACGCGATCACA
CACCCTGCCACCCGTTTCCCCTCTTCCGCATGTATCGACCCGATCCCCGA
TTCAAAAATGTCAGGCCAGCGCGCGGGAACACCACCCCTAGAGGTGGCGG
TTACACCCGCGACCGGTGCAGCCGTAAGCACCACCACCAGCGCGATCCTC
TTCCCCGCTCTTCGTGTCGTACTGGAGGATCGCGTCGGGGGTCGTCGGTG
GCTGGGGTCGGTTCGGGAGCTGCAGACCGTGTGCTTCGAGGCCTGCAAGG
AGTGCCGCAAGGTCGTGCCTGTCCGTCTCCGTGTGTCGGACGGAACGCCA
GACCACCTCTGGAAGCAGGGAACAACGGCAGAGAGGGCAATGGCAGCAGC
AAAGGTGGTGGTGGCGGCGGCCGAGCTAGAACCTGGCGGCGGCGGCGGCG
GCGGCGGCGGTGGCAGCGGCGGCATTGAAAGCTATGGTAGCGGTAGCAGC
GGTGACGGTGGGTGCTTCGACTTCGACCTCGACGGCGCCCCCGGCAGCGA
AGTTGACAGCGAGGACGCCGCCGCTAGCGATGTGGACGGTAGCGAGTGCA
GCTGGAGTCTCCCCAACTTGTGGGGAAGGGAGGAGGCGGCGATAGAGGAC
AGAAGAGAATCGATTCCTTCCCCGTACTCTTCGCCGGGCAGAGATGTCCC
CCCTGTGAGGATCATGGGCATGGTGTGGGAGCGCAGCACGCTGGCGAAGA
TTTCCTTTGGCCGTCCCGAGCTGCCGGAGATGGCGTTCGGGGCCGCGGTG
ATCGAGCCCTTGCACGGGGCGGCCTGGGCGTCCGCGCTGAAGCGGATCAC
CCTCGGCTCAAAGGACTGGAACCTTCCCCCGGCAACGGCGATGCTTGATG
CAGAAGGCGGCGACAAAAACTGGCCGCCTTCTCTGGAAGAGCTGACCTTC
GGCGAGCACTTTAATGCG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9576:2185..5752+

>mRNA_E_fasciculatus_S2_contig9576.17595.1 ID=mRNA_E_fasciculatus_S2_contig9576.17595.1|Name=mRNA_E_fasciculatus_S2_contig9576.17595.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1014bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9576:2185..5752+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGACGCCACTGACCCTCAGGCTATCGCCGCAGCAGCAGGGAGACCT
TCGCGATGACCAGGCCCCGCAGTCTCTATGGCAACCACCGCATCATCTCC
GGCGGCAGTCTTCAGCATTGAAGCGGACCGCGGTGGAGGCTAAACTAGCG
GGAAATGGCGGCCAGCGCGCGGGAACACCACCCCTAGAGGTGGCGGTTAC
ACCCGCGACCGGTGCAGCCGTAAGCACCACCACCAGCGCGATCCTCTTCC
CCGCTCTTCGTGTCGTACTGGAGGATCGCGTCGGGGGTCGTCGGTGGCTG
GGGTCGGTTCGGGAGCTGCAGACCGTGTGCTTCGAGGCCTGCAAGGAGTG
CCGCAAGGTCGTGCCTGTCCGTCTCCGTGTGTCGGACGGAACGCCAGACC
ACCTCTGGAAGCAGGGAACAACGGCAGAGAGGGCAATGGCAGCAGCAAAG
GTGGTGGTGGCGGCGGCCGAGCTAGAACCTGGCGGCGGCGGCGGCGGCGG
CGGCGGTGGCAGCGGCGGCATTGAAAGCTATGGTAGCGGTAGCAGCGGTG
ACGGTGGGTGCTTCGACTTCGACCTCGACGGCGCCCCCGGCAGCGAAGTT
GACAGCGAGGACGCCGCCGCTAGCGATGTGGACGGTAGCGAGTGCAGCTG
GAGTCTCCCCAACTTGTGGGGAAGGGAGGAGGCGGCGATAGAGGACAGAA
GAGAATCGATTCCTTCCCCGTACTCTTCGCCGGGCAGAGATGTCCCCCCT
GTGAGGATCATGGGCATGGTGTGGGAGCGCAGCACGCTGGCGAAGATTTC
CTTTGGCCGTCCCGAGCTGCCGGAGATGGCGTTCGGGGCCGCGGTGATCG
AGCCCTTGCACGGGGCGGCCTGGGCGTCCGCGCTGAAGCGGATCACCCTC
GGCTCAAAGGACTGGAACCTTCCCCCGGCAACGGCGATGCTTGATGCAGA
AGGCGGCGACAAAAACTGGCCGCCTTCTCTGGAAGAGCTGACCTTCGGCG
AGCACTTTAATGCG
back to top