mRNA_E_fasciculatus_S2_contig9572.17590.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9572.17590.1
Unique NamemRNA_E_fasciculatus_S2_contig9572.17590.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9572.17590.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 4.620e-35
Identity = 83/117 (70.94%), Postives = 84/117 (71.79%), Query Frame = 3 
Query:   18 RFGGGXXXRVQDSRRAGEGGVSAEXXXXXXXXAERRRAARRLERFRYMAEFAANTVKERFSLFGGRMSAEVPFTGDLPPRIGHQRRRSGGEASTGATSVGSGSSAGLGSMVGLTVWR 368
            R GGG   RVQD+RRA  GGVSAE        AER RAARRLERFRYMAEFAANTVKERFSLFGGRMSAEVPFTGDLPPRIGHQRRRSGGEAST                  LTVWR
Sbjct: 2437 RTGGGG--RVQDTRRA-VGGVSAEAEAAAVATAERERAARRLERFRYMAEFAANTVKERFSLFGGRMSAEVPFTGDLPPRIGHQRRRSGGEASTXXXXXXXXXXXXXXXXXXLTVWR 2550
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BLAST of mRNA_E_fasciculatus_S2_contig9572.17590.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.020e-9
Identity = 39/55 (70.91%), Postives = 40/55 (72.73%), Query Frame = 3 
Query:   18 RFGGGXXXRVQDSRRAGEGGVSAEXXXXXXXXAERRRAARRLERFRYMAEFAANT 182
            R G G   RVQD+RRA EGGVSAE        AER RAARRLERFRYMAEFAANT
Sbjct: 2419 RLGIGGGGRVQDTRRA-EGGVSAEAKAAAVATAERERAARRLERFRYMAEFAANT 2472
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9572.17590.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.620e-3570.94protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.020e-970.91protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9572contigE_fasciculatus_S2_contig9572:2924..4028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size502
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.1253252-UTR-E_fasciculatus_S2_contig9572:2923..30541696842604.1253252-UTR-E_fasciculatus_S2_contig9572:2923..3054Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9572 2924..3054 -
1696842604.1545517-UTR-E_fasciculatus_S2_contig9572:3870..40281696842604.1545517-UTR-E_fasciculatus_S2_contig9572:3870..4028Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9572 3871..4028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842604.1357265-CDS-E_fasciculatus_S2_contig9572:3054..32431696842604.1357265-CDS-E_fasciculatus_S2_contig9572:3054..3243Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9572 3055..3243 -
1696842604.1452358-CDS-E_fasciculatus_S2_contig9572:3846..38701696842604.1452358-CDS-E_fasciculatus_S2_contig9572:3846..3870Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9572 3847..3870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9572.17590.1prot_E_fasciculatus_S2_contig9572.17590.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9572 3055..3870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9572.17590.1

>prot_E_fasciculatus_S2_contig9572.17590.1 ID=prot_E_fasciculatus_S2_contig9572.17590.1|Name=mRNA_E_fasciculatus_S2_contig9572.17590.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=71bp
MAEFAANTVKERFSLFGGRMSAEVPFTGDLPPRIGHQRRRSGGEASTGAT
SVGSGSSAGLGSMVGLTVWR*
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mRNA from alignment at E_fasciculatus_S2_contig9572:2924..4028-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9572.17590.1 ID=mRNA_E_fasciculatus_S2_contig9572.17590.1|Name=mRNA_E_fasciculatus_S2_contig9572.17590.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1105bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9572:2924..4028- (Ectocarpus fasciculatus EfasUO2)
CGGTGGGCGAAGGCGCACGCTTCGGCGGTGGCGGCGGCGGGCGGGTGCAG
GACTCGAGGAGGGCGGGGGAGGGGGGGGTGAGCGCGGAGGCGGAGGCGGC
GGCGGTGGCGACGGCGGAGCGGCGGAGGGCGGCGCGAAGGTTGGAGAGGT
TCCGATACATGGCGGAGTTTGCTGCGAACACGGTGAGTTGTTGGTGTACG
AAATCGAGGAGATGATGAGGCGTTTGAGGGGAGGACGGCACAGCGGCGAC
GGCGGCGGCGGCGTTTTTTTTTTTCTTCCTGAGATGGACGTTCGCGTTGG
CTGTGCAGGGGGGCAGTCTGTGCTCGGCTCCGTCGATTCTTTTTTGTCGG
CTGCCATTCCCCAGACGGGTTCCGTCTTCGCTTCTTGAAAGGAAATTCGA
CACTCCCCCCCCCCCCCAAAAGCCCCCCCCCTTTTACGTCCCAACACCAC
CCCCAGGCATGCAAGACGGAGCGCCCCCTGTGTTTTTTCCCCATCCCTTC
TCCNNNNNNNNNNCCCCCCCCGGCTCCCTCTTCGCTTTTTGAAAGGGAAT
GGGGGACCCCCCCCCCCCCCCCCATAAGCTCCCGTCCTTTGACGTCCAAC
AACTACCCCCAGGCATGCAAGACGAAGCGCTCCCTGTGTTTTTGCCCTCT
CCATGCTACACTCCGAACAGCGTGTGGTAACCTTGGCTGGCTGTCTTCCC
TTCACTGCTGTGTCACTCCTATTATACCCTTAAACTATAACCCTAAAATC
TTCTTGTTTTCTCGGCTAACAACGTTGGTCCCAAGGTCAAGGAGAGGTTC
TCCTTGTTCGGAGGGAGGATGTCCGCCGAAGTCCCGTTCACAGGCGACCT
GCCTCCTAGGATTGGCCACCAGAGGCGCCGGTCGGGGGGAGAGGCGAGCA
CCGGGGCTACCAGCGTCGGCAGCGGCAGCAGCGCGGGGCTCGGGTCCATG
GTTGGGCTCACCGTGTGGCGATGACAGCGGACTGCTGCTCGGCGGTGGGG
GAGTAGGGGGGTTGGTTCTACGGAGACGTTTCTCCGCGCCCGGTCCCCTT
GACCTACCTGTTGGACGAGCAGTGACGATCGCGGCAGTAGGCCGGCCGGC
CGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9572:2924..4028-

>mRNA_E_fasciculatus_S2_contig9572.17590.1 ID=mRNA_E_fasciculatus_S2_contig9572.17590.1|Name=mRNA_E_fasciculatus_S2_contig9572.17590.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=213bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9572:2924..4028- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGAGTTTGCTGCGAACACGGTCAAGGAGAGGTTCTCCTTGTTCGG
AGGGAGGATGTCCGCCGAAGTCCCGTTCACAGGCGACCTGCCTCCTAGGA
TTGGCCACCAGAGGCGCCGGTCGGGGGGAGAGGCGAGCACCGGGGCTACC
AGCGTCGGCAGCGGCAGCAGCGCGGGGCTCGGGTCCATGGTTGGGCTCAC
CGTGTGGCGATGA
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