mRNA_E_fasciculatus_S2_contig9570.17587.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9570.17587.1
Unique NamemRNA_E_fasciculatus_S2_contig9570.17587.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9570.17587.1 vs.
Match: PAP_fibrillin (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU6_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.480e-58
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:    1 LQTVLSGVGEGYIPYSEADKSAIEELVVELETSSGQGTEVQFPRDLGKLDGRWRLVFTNNLVGLGRLSPVELRDVYQVVDSGAGLVSNVVYATMSPP 291
            LQTVLSGVGEGYIPYSEADKSAIEELVVELETSSGQGTEVQFPRDLGKLDGRWRLVFTNNLVGLGRLSPVELRDVYQVVDS AGLVSNVVYATMSPP
Sbjct:   86 LQTVLSGVGEGYIPYSEADKSAIEELVVELETSSGQGTEVQFPRDLGKLDGRWRLVFTNNLVGLGRLSPVELRDVYQVVDSAAGLVSNVVYATMSPP 182
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BLAST of mRNA_E_fasciculatus_S2_contig9570.17587.1 vs.
Match: PAP_fibrillin (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.060e-23
Identity = 48/97 (49.48%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    1 LQTVLSGVGEGYIPYSEADKSAIEELVVELETSSGQGTEVQFPRDLGKLDGRWRLVFTNNLVGLGRLSPVELRDVYQVVDSGAGLVSNVVYATMSPP 291
            L  + SGVG+GY   S +    I++ +V+LETS G    V+FP D   LDGRW+L++++N+ G+GRLSP+ L +VYQVVD+    + NVVYAT+SPP
Sbjct:   65 LSAIGSGVGKGYYMTSRSAAKDIKKAIVDLETS-GADMAVKFPSDFATLDGRWKLLYSSNIFGVGRLSPLTLDEVYQVVDTAGNSIKNVVYATLSPP 160
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BLAST of mRNA_E_fasciculatus_S2_contig9570.17587.1 vs.
Match: PAP_fibrillin (domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835ENR3_9POAL)

HSP 1 Score: 51.2 bits (121), Expect = 2.470e-5
Identity = 35/99 (35.35%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:    7 TVLSGVGEGYIPYSEADKSAIEELVVELETSSGQGTEVQFPRDLGKLDGRWRLVFTNNLVG----LGRLSPVELRDVYQVVDSGAGLVSNVVYATMSPP 291
            + +SG+  G +  SE D S  +    ELE ++G G  V   RDL KL GRWRLV+++         GRL P+ L  V+Q +D  +    N+V   +  P
Sbjct:  226 SAVSGLNRG-LAASEEDLSRADAAARELEAAAG-GEPVDLERDLDKLQGRWRLVYSSAFSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAP 322
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9570.17587.1 vs.
Match: PAP_fibrillin (domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835AWW9_9POAL)

HSP 1 Score: 51.2 bits (121), Expect = 2.480e-5
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 1 
Query:    1 LQTVLSGVGEGYIPYSEADKSAIEELVVELETSSGQGTEVQFPRDLGKLDGRWRLVFTNNLVG----LGRLSPVELRDVYQVVDSGAGLVSNVVYATMSPP 291
            L + +SG+  G +  +E D S  +    ELE ++G G  V   RDL KL GRWRLV+++         GRL P+ L  V+Q +D  +    N+V   +  P
Sbjct:  244 LLSAVSGLNRG-LAATEEDLSRADAAARELEAAAG-GEPVDLERDLDKLQGRWRLVYSSAFSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAP 342
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9570.17587.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
PAP_fibrillin1.480e-5898.97domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
PAP_fibrillin4.060e-2349.48domain-containing protein n=1 Tax=Tribonema minus ... [more]
PAP_fibrillin2.470e-535.35domain-containing protein n=1 Tax=Digitaria exilis... [more]
PAP_fibrillin2.480e-534.65domain-containing protein n=1 Tax=Digitaria exilis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9570contigE_fasciculatus_S2_contig9570:4644..4934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size291
Hectar predicted targeting categoryother localisation
Exons1
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842603.7882187-CDS-E_fasciculatus_S2_contig9570:4643..49341696842603.7882187-CDS-E_fasciculatus_S2_contig9570:4643..4934Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9570 4644..4934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9570.17587.1prot_E_fasciculatus_S2_contig9570.17587.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9570 4644..4934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9570.17587.1

>prot_E_fasciculatus_S2_contig9570.17587.1 ID=prot_E_fasciculatus_S2_contig9570.17587.1|Name=mRNA_E_fasciculatus_S2_contig9570.17587.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=97bp
LQTVLSGVGEGYIPYSEADKSAIEELVVELETSSGQGTEVQFPRDLGKLD
GRWRLVFTNNLVGLGRLSPVELRDVYQVVDSGAGLVSNVVYATMSPP
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mRNA from alignment at E_fasciculatus_S2_contig9570:4644..4934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9570.17587.1 ID=mRNA_E_fasciculatus_S2_contig9570.17587.1|Name=mRNA_E_fasciculatus_S2_contig9570.17587.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=291bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9570:4644..4934+ (Ectocarpus fasciculatus EfasUO2)
CTGCAGACCGTCCTCTCCGGGGTCGGCGAGGGCTACATCCCCTACTCGGA
GGCGGACAAGAGCGCGATCGAGGAGCTGGTAGTGGAGCTCGAGACCTCCT
CGGGACAGGGCACGGAGGTGCAGTTTCCCAGGGACCTGGGCAAGCTGGAC
GGGCGGTGGAGGCTGGTCTTCACGAACAACCTGGTGGGGCTCGGCAGGCT
ATCCCCAGTGGAGCTGCGGGACGTGTACCAGGTGGTGGACTCGGGCGCCG
GGCTGGTGAGCAACGTGGTGTACGCGACCATGTCCCCGCCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9570:4644..4934+

>mRNA_E_fasciculatus_S2_contig9570.17587.1 ID=mRNA_E_fasciculatus_S2_contig9570.17587.1|Name=mRNA_E_fasciculatus_S2_contig9570.17587.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=291bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9570:4644..4934+ (Ectocarpus fasciculatus EfasUO2)
CTGCAGACCGTCCTCTCCGGGGTCGGCGAGGGCTACATCCCCTACTCGGA
GGCGGACAAGAGCGCGATCGAGGAGCTGGTAGTGGAGCTCGAGACCTCCT
CGGGACAGGGCACGGAGGTGCAGTTTCCCAGGGACCTGGGCAAGCTGGAC
GGGCGGTGGAGGCTGGTCTTCACGAACAACCTGGTGGGGCTCGGCAGGCT
ATCCCCAGTGGAGCTGCGGGACGTGTACCAGGTGGTGGACTCGGGCGCCG
GGCTGGTGAGCAACGTGGTGTACGCGACCATGTCCCCGCCT
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