mRNA_E_fasciculatus_S2_contig957.17584.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig957.17584.1
Unique NamemRNA_E_fasciculatus_S2_contig957.17584.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig957.17584.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV2_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 8.030e-73
Identity = 109/124 (87.90%), Postives = 117/124 (94.35%), Query Frame = 1 
Query:   34 QVVSCKPAKLEIPAHGKAEMKVEYVPRKINSKYRKTVTVVNALNPHGNADVEIAASNTDTHHVLYHSHFYKVFVKNRMRQQQVYFNHAVTGCPELRTFDVHNVWDFPLLFEIGADTPEIQVQRV 405
            + VSCKPA+L+IPAHGKAEMKVEYVPRKIN KYRKT+TV+NA NPHG+ADVEIAASNTDTHHVLYHSHFYKVFVKNRMRQQQVYFNH VTGCPELRTFDV NVW+ PLLFEIGADTPEI+VQ V
Sbjct:  136 EAVSCKPARLDIPAHGKAEMKVEYVPRKINYKYRKTLTVMNAHNPHGHADVEIAASNTDTHHVLYHSHFYKVFVKNRMRQQQVYFNHTVTGCPELRTFDVQNVWNLPLLFEIGADTPEIEVQGV 259
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BLAST of mRNA_E_fasciculatus_S2_contig957.17584.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 2.060e-65
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:   31 AQVVSCKPAKLEIPAHGKAEMKVEYVPRKINSKYRKTVTVVNALNPHGNADVEIAASNTDTHHVLYHSHFYKVFVKNRMRQQQVYFNHAVTGCPELRTFDVHNVWDFPLLFEIGADTPEIQV 396
            ++ VSCKPA+L+IPAHG AEMKVEYVPRKIN KYRKTVTV+NA NPHG+ADVEIAASNTDTHHVLYHSHFYKVFVKNRMRQQQVYFNH VTGCPELRTFDV NVW+ PLLFEIGADTPEIQ+
Sbjct:  937 SKAVSCKPARLDIPAHGTAEMKVEYVPRKINYKYRKTVTVMNAHNPHGHADVEIAASNTDTHHVLYHSHFYKVFVKNRMRQQQVYFNHTVTGCPELRTFDVQNVWNLPLLFEIGADTPEIQL 1058
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BLAST of mRNA_E_fasciculatus_S2_contig957.17584.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA)

HSP 1 Score: 154 bits (389), Expect = 8.900e-41
Identity = 68/119 (57.14%), Postives = 88/119 (73.95%), Query Frame = 1 
Query:   31 AQVVSCKPAKLEIPAHGKAEMKVEYVPRKINSKYRKTVTVVNALNPHGNADVEIAASNTDTHHVLYHSHFYKVFVKNRMRQQQVYFNHAVTGCPELRTFDVHNVWDFPLLFEIGADTPE 387
            ++ VSC P  L IP  G A++K+EYVPRKINS YRKT+T++N  N  G  ++EI A+N DTHH+LYHS FYKV V N M+QQQVYF+H V  CP LRTF + N+ D PLLFE+ + +P+
Sbjct: 2121 SKAVSCTPTNLSIPPRGSADLKIEYVPRKINSHYRKTITLINCFNARGTREIEIRAANMDTHHILYHSAFYKVLVNNHMKQQQVYFDHVVANCPSLRTFAIRNISDRPLLFEVSSSSPD 2239
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BLAST of mRNA_E_fasciculatus_S2_contig957.17584.1 vs.
Match: Uncharacterized (protein n=8 Tax=Albugo candida TaxID=65357 RepID=A0A024GCH3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 8.630e-8
Identity = 34/104 (32.69%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   88 EMKVEYVPRKINSKYRKTVTVVNALNPHGNADVEIAASNTDTHHVLYHSHFYKVFVKNRMRQQQVYFNHAVTGCPELRTFDVHNVWDFPLLFEIGADTPEIQVQ 399
            E+KVE +PRKINS Y + ++++N  N   + +V + +SN D H V+YHS FYK+  ++      + F+  V     ++ FD+ N+    L   +    P ++VQ
Sbjct:  836 ELKVEIIPRKINSNYSRLISILNLRNKSNSPNVCVRSSNMDAHDVIYHSRFYKLITQSG--SAFLNFDCVVMNSVWIQVFDLENITKDVLSLTLRPSDP-VKVQ 936
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BLAST of mRNA_E_fasciculatus_S2_contig957.17584.1 vs.
Match: Uncharacterized (protein n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GLF3_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 1.570e-7
Identity = 31/120 (25.83%), Postives = 62/120 (51.67%), Query Frame = 1 
Query:   31 AQVVSCKPAKLEIPAHGKAEMKVEYVPRKINSKYRKTVTVVNALNPHG-NADVEIAASNTDTHHVLYHSHFYKVFVKNRMRQQQVYFNHAVTGCPELRTFDVHNVWDFPLLFEIGADTPE 387
            +++++C    ++IP  G   M+++  PR++NS+YRK + +VN  N +  +  V + + + D   + YH+  YK  + NR  Q  + F  A    P  +  ++ NV D  +  E  ++  +
Sbjct:  848 SKIINCNHLPVKIPPRGSVNMRIDIYPRRVNSRYRKQINIVNLKNRNQPDLIVNVKSQHIDPGRMSYHNLLYKTLLNNR-EQNFIDFGVAPINSPIFKIMEIKNVCDEQIEIEFSSENSQ 966
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig957.17584.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized8.030e-7387.90protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.060e-6587.70protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.900e-4157.14protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized8.630e-832.69protein n=8 Tax=Albugo candida TaxID=65357 RepID=A... [more]
Uncharacterized1.570e-725.83protein n=1 Tax=Smittium mucronatum TaxID=133383 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig957contigE_fasciculatus_S2_contig957:23480..24633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score226.5
Seed ortholog evalue7.7e-57
Seed eggNOG ortholog2880.D8LHH6
Model size414
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28MMI@1,2QU5A@2759
Cds size414
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842603.5929804-CDS-E_fasciculatus_S2_contig957:23479..237251696842603.5929804-CDS-E_fasciculatus_S2_contig957:23479..23725Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig957 23480..23725 +
1696842603.612378-CDS-E_fasciculatus_S2_contig957:24465..246331696842603.612378-CDS-E_fasciculatus_S2_contig957:24465..24633Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig957 24466..24633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig957.17584.1prot_E_fasciculatus_S2_contig957.17584.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig957 23480..24633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig957.17584.1

>prot_E_fasciculatus_S2_contig957.17584.1 ID=prot_E_fasciculatus_S2_contig957.17584.1|Name=mRNA_E_fasciculatus_S2_contig957.17584.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=138bp
MGSPPPPPPYAQVVSCKPAKLEIPAHGKAEMKVEYVPRKINSKYRKTVTV
VNALNPHGNADVEIAASNTDTHHVLYHSHFYKVFVKNRMRQQQVYFNHAV
TGCPELRTFDVHNVWDFPLLFEIGADTPEIQVQRVRQ*
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mRNA from alignment at E_fasciculatus_S2_contig957:23480..24633+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig957.17584.1 ID=mRNA_E_fasciculatus_S2_contig957.17584.1|Name=mRNA_E_fasciculatus_S2_contig957.17584.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1154bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig957:23480..24633+ (Ectocarpus fasciculatus EfasUO2)
ATGGGTAGCCCCCCTCCCCCCCCCCCCTACGCACAGGTGGTTAGCTGCAA
GCCGGCCAAGCTCGAAATCCCGGCGCACGGCAAGGCCGAGATGAAGGTCG
AGTACGTGCCGCGCAAGATCAACTCCAAGTACCGGAAGACGGTGACCGTG
GTGAACGCCTTGAATCCGCACGGCAACGCCGACGTGGAGATCGCGGCCAG
CAACACGGACACCCACCACGTGCTCTACCACTCGCACTTTTACAAGGTGA
GTCAGTCGGAGTTGGACCGCCACTTTGCGAGTATTTTTTTACTATTTATC
TATGAAGTAGAGAGGGGGGTTCGTAACCGTAGCCCTATCCCCACCCCCTA
CCTCCTGCTAAAACCAAGCTTAATATCGTCGCGAAGGCTACTACTGGTCG
AGTTCCACTCGCATTTCTGCTGGCGGGGGGCGGGCAGTACTCTTGTGTTT
TCCATGCCTTGGCGGTTAGACCATTGACAACGCGTCCTCGAGAGGATCGA
GCATTTTTCCCACAGGACCGATCACCGATGGCCAATCGTTCCTTCCTTGC
TGGGGGGAGACGGTGGGGGGTCGCGTTTCCTGTCCGCGTCTTGTGCACAC
GTGTGCTACGGGAGTGCATTGCAAGTTGTATTTTCCAGCTGCTTTGAAGT
TGGGGTAGTGCAGAGAACGGCGATATAGTGGTCCCTGTATATAGCCGCAC
TTTTGAGGCCGGTCGCCCTGTGTGAGGCATGAGGCCGGTGAAATCGCGTG
ACACAAAAAGATGGGAATTTTCAAGTTTGTCTTGTATTGCCGAGTGCCCG
GTATAAATGGCACTCTGCGGGCTTTGGCCAAAGCACTCTGCGGCTTTATA
CAATGGCCGGCCAAATCACTCTGCGGCCTTACACAGGTAGCGCTACTGCT
GTGTTGCATATTAAAAGAAGAGAGAGCACCGAGGTCATCTCTCGCGTCGT
GCACACGGTCTTCTTCCTCTTTTTTTTTTCTTCCAGGTGTTCGTCAAGAA
CCGCATGCGGCAGCAGCAGGTGTACTTCAACCACGCCGTGACCGGATGCC
CGGAGCTGCGCACCTTCGACGTCCATAACGTGTGGGACTTCCCGCTGCTG
TTCGAGATAGGGGCCGACACCCCCGAGATTCAGGTGCAGCGTGTGCGGCA
GTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig957:23480..24633+

>mRNA_E_fasciculatus_S2_contig957.17584.1 ID=mRNA_E_fasciculatus_S2_contig957.17584.1|Name=mRNA_E_fasciculatus_S2_contig957.17584.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=414bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig957:23480..24633+ (Ectocarpus fasciculatus EfasUO2)
ATGGGTAGCCCCCCTCCCCCCCCCCCCTACGCACAGGTGGTTAGCTGCAA
GCCGGCCAAGCTCGAAATCCCGGCGCACGGCAAGGCCGAGATGAAGGTCG
AGTACGTGCCGCGCAAGATCAACTCCAAGTACCGGAAGACGGTGACCGTG
GTGAACGCCTTGAATCCGCACGGCAACGCCGACGTGGAGATCGCGGCCAG
CAACACGGACACCCACCACGTGCTCTACCACTCGCACTTTTACAAGGTGT
TCGTCAAGAACCGCATGCGGCAGCAGCAGGTGTACTTCAACCACGCCGTG
ACCGGATGCCCGGAGCTGCGCACCTTCGACGTCCATAACGTGTGGGACTT
CCCGCTGCTGTTCGAGATAGGGGCCGACACCCCCGAGATTCAGGTGCAGC
GTGTGCGGCAGTAG
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