mRNA_E_fasciculatus_S2_contig957.17583.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig957.17583.1
Unique NamemRNA_E_fasciculatus_S2_contig957.17583.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig957.17583.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.770e-34
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 AVDAEGFAHSREMLRRKPSVGSDVRQFSKNIAGRAMVCTSVLSVVPREISFGNCNIGEYKSQSLEISN 204
            AVD EGFAHSR MLRRKPSVGSDVRQFSKNIAGRAMVCTSVLSVVPREISFGNCNIGEYKSQSLEISN
Sbjct:  856 AVDVEGFAHSRGMLRRKPSVGSDVRQFSKNIAGRAMVCTSVLSVVPREISFGNCNIGEYKSQSLEISN 923
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BLAST of mRNA_E_fasciculatus_S2_contig957.17583.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.670e-28
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 AVDAEGFAHSREMLRRKPSVGSDVRQFSKNIAGRAMVCTSVLSVVPREISFGNCNIG 171
            AVD EGFAHS EMLRRKPSVGSDVRQFSKNIAGRAMVCTSVLSVVPREISFGNCNIG
Sbjct:   12 AVDVEGFAHSGEMLRRKPSVGSDVRQFSKNIAGRAMVCTSVLSVVPREISFGNCNIG 68
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BLAST of mRNA_E_fasciculatus_S2_contig957.17583.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.170e-7
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   73 RQFSKNIAGRAMVCTSVLSVVPREISFGNCNIGEYKSQSLEISN 204
            R+ SK IAGRA VCTSVLS+    + FG+C IGEY+S+ + ++N
Sbjct: 2064 RKSSKTIAGRARVCTSVLSISRTVVDFGDCQIGEYRSEHVMVTN 2107
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig957.17583.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.770e-3497.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.670e-2896.49protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.170e-754.55protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig957contigE_fasciculatus_S2_contig957:22204..22802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score133.3
Seed ortholog evalue4.4e-29
Seed eggNOG ortholog2880.D8LHH6
Model size204
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28MMI@1,2QU5A@2759
Cds size204
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842603.545613-CDS-E_fasciculatus_S2_contig957:22203..223721696842603.545613-CDS-E_fasciculatus_S2_contig957:22203..22372Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig957 22204..22372 +
1696842603.5612442-CDS-E_fasciculatus_S2_contig957:22767..228021696842603.5612442-CDS-E_fasciculatus_S2_contig957:22767..22802Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig957 22768..22802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig957.17583.1prot_E_fasciculatus_S2_contig957.17583.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig957 22204..22802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig957.17583.1

>prot_E_fasciculatus_S2_contig957.17583.1 ID=prot_E_fasciculatus_S2_contig957.17583.1|Name=mRNA_E_fasciculatus_S2_contig957.17583.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
AVDAEGFAHSREMLRRKPSVGSDVRQFSKNIAGRAMVCTSVLSVVPREIS
FGNCNIGEYKSQSLEISN
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mRNA from alignment at E_fasciculatus_S2_contig957:22204..22802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig957.17583.1 ID=mRNA_E_fasciculatus_S2_contig957.17583.1|Name=mRNA_E_fasciculatus_S2_contig957.17583.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=599bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig957:22204..22802+ (Ectocarpus fasciculatus EfasUO2)
GCGGTGGATGCCGAGGGCTTCGCGCACTCGCGGGAGATGTTGCGGCGAAA
GCCCAGCGTGGGGTCGGACGTCCGGCAGTTCTCCAAGAACATCGCGGGAC
GAGCCATGGTGTGCACCTCGGTGCTGTCGGTGGTGCCTCGGGAGATCTCG
TTCGGGAACTGCAACATCGGTAAGCGGGGCGGTTCGTGGTCGGTGGGAGG
TTGCACAAGGAGTGAGGGGGGGGGGTTCCGTTTGTGGGAGGCTGTTGGTG
GAAACTTGGTTCATGGTCAGAGGACTGTGGTGCGGTGGTATAGTTCCCTT
TGTGTATTTTGGTGTACCGAGATGCGCGTTGTGTTTTGTTTTAGCTTGCC
GGACGCCCTCTAGTGATGGTGCGTCGTTGTTTCATGTCCGATTATCTGTT
CCTTCATTTTTGAAAGCGTCGTGCTTCCTCTGTTATCTTTGTTGTTGTTG
TTGACCAAACAACAACCATCGCCTTCTATTTGCTCTTGTTCATCAGTTGC
ACTGATGCAATTTCGTTCGGCTACTCGCGCATGGCACGTACCCCCCCCCC
CCCAACGACAAAAGGCGAGTACAAGAGCCAGAGCTTGGAGATATCGAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig957:22204..22802+

>mRNA_E_fasciculatus_S2_contig957.17583.1 ID=mRNA_E_fasciculatus_S2_contig957.17583.1|Name=mRNA_E_fasciculatus_S2_contig957.17583.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig957:22204..22802+ (Ectocarpus fasciculatus EfasUO2)
GCGGTGGATGCCGAGGGCTTCGCGCACTCGCGGGAGATGTTGCGGCGAAA
GCCCAGCGTGGGGTCGGACGTCCGGCAGTTCTCCAAGAACATCGCGGGAC
GAGCCATGGTGTGCACCTCGGTGCTGTCGGTGGTGCCTCGGGAGATCTCG
TTCGGGAACTGCAACATCGGCGAGTACAAGAGCCAGAGCTTGGAGATATC
GAAC
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