mRNA_E_fasciculatus_S2_contig9565.17578.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9565.17578.1
Unique NamemRNA_E_fasciculatus_S2_contig9565.17578.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17578.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.260e-27
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:  340 STCSNDLEGIDRKGDICCPVGCGPCRGRGCSTSGASYGLGAESCCIRVVYDSGRYCDDTNEAPCII 537
            +TCSNDLEGID KG++CCP+GCG C G GCSTSGAS GLGAESCC   V DSGRYCDD NEAPCII
Sbjct:  740 TTCSNDLEGIDHKGEVCCPLGCGQCGGSGCSTSGASNGLGAESCCSSEVKDSGRYCDDANEAPCII 805
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17578.1 vs.
Match: FirrV-1-B30 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 3.300e-25
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:  337 ESTCSNDLEGIDRKGDICCPVGCGPCRGRGCSTSGASYGLGAESCCIRVVYDSGRYCDDTNEAPCII 537
            E+TCSN LEGID KG++CCP+ CG C G GCSTSGAS GLGA+SCC   + DSGR+CDDTNEAPCII
Sbjct:  540 ENTCSNGLEGIDHKGEVCCPLRCGQCGGSGCSTSGASNGLGADSCCSSEINDSGRHCDDTNEAPCII 606
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17578.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.990e-20
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:  343 TCSNDLEGIDRKGDICCPVGCGPCRGRGCSTSGASYGLGAESCCIRVVYDSGRYCDDTNEAPCII 537
            TCSN +EGID  G +CCP+GCG C G GC+TSGA+ GLGA+SCC   +  S  YCD+TNEAPCII
Sbjct:  346 TCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCII 410
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17578.1 vs.
Match: FirrV-1-B30 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.210e-19
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:  331 KTESTCSNDLEGIDRKGDICCPVGCGPCRGRGCSTSGASYGLGAESCCIRVVYDSGRYCDDTNEAPCI 534
            + ESTC + +EGID +  +CCP+ CG C G GCSTSGA+YGLGA+SCC   V  SG+YCDDT EAPCI
Sbjct:  334 EAESTCRDGIEGIDGR-VVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGEAPCI 400
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9565.17578.1 vs.
Match: FirrV-1-B30 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN04_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.350e-19
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:  337 ESTCSNDLEGIDRKGDICCPVGCGPCRGRGCSTSGASYGLGAESCCIRVVYDSGRYCDDTNEAPCI 534
            ESTC + +EGID +  +CCP+ CG C G GCSTSGA+YGLGA+SCC   V  SG+YCDDT EAPCI
Sbjct:  314 ESTCRDGIEGIDGR-VVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGEAPCI 378
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17578.1 vs.
Match: Unsaturated (glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.070e-19
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:  334 TESTCSNDLEGIDRKGDICCPVGCGPCRGRGCSTSGASYGLGAESCCIRVVYDSGRYCDDTNEAPCII 537
            T  TCSN LEGID  G +CCP+ C  C G GC+TSG++ GLG+ESCC   +  SG YCDDTNEAPCII
Sbjct:  541 TVETCSNGLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCII 608
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17578.1 vs.
Match: Mannuronan (C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 5.520e-19
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  343 TCSNDLEGIDRKGDICCPVGCGPCRGRGCSTSGASYGLGAESCCIRVVYDSGRYCDDTNEAPCII 537
            TCS+  EGID  G +CCP+GCG C G GC T+G++ GLG+ESCC   V   G YCDDTNEAPCII
Sbjct:  503 TCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCII 567
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9565.17578.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.340e-18
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  343 TCSNDLEGIDRKGDICCPVGCGPCRGRGCSTSGASYGLGAESCCIRVVYDSGRYCDDTNEAPCII 537
            TCSN LEGID  G +CCP+ CG C G+GC TSG++ GLG + CC   +  S  YCD+TNEAPCII
Sbjct:  346 TCSNGLEGIDGSGGVCCPLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCII 410
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9565.17578.1 vs.
Match: Unsaturated (glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 8.230e-18
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:  310 LVEIVRFKTESTCSNDLEGIDRKGDICCPVGCGPCRGRGCSTSGASYGLGAESCCIRVVYDSGRYCDDTNEAPCII 537
            +VE     + +TCSN ++GID  G +CCP+ C  C G GC+ +G + GLGAESCC   V  SGRYCDDT+EAPCII
Sbjct:  515 VVEAFDSASVTTCSNGVQGIDGNGIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCII 590
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BLAST of mRNA_E_fasciculatus_S2_contig9565.17578.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.890e-17
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  343 TCSNDLEGIDRKGDICCPVGCGPCRGRGCSTSGASYGLGAESCCIRVVYDSGRYCDDTNEAPCII 537
            TCSN LEGID  G +CCP+ CG C G+GC TSG++ GL  +SCC   +  S  YCD+TNEAPCII
Sbjct:  447 TCSNGLEGIDGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKASDEYCDETNEAPCII 511
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9565.17578.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Uncharacterized5.260e-2778.79protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
FirrV-1-B303.300e-2573.13n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized5.990e-2064.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
FirrV-1-B301.210e-1963.24n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
FirrV-1-B301.350e-1965.15n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Unsaturated2.070e-1963.24glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarp... [more]
Mannuronan5.520e-1963.08C-5-epimerase C-terminal n=1 Tax=Ectocarpus silicu... [more]
Uncharacterized6.340e-1860.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Unsaturated8.230e-1855.26glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarp... [more]
Hypothetical1.890e-1760.00leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9565contigE_fasciculatus_S2_contig9565:1569..2156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size590
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842603.0254056-CDS-E_fasciculatus_S2_contig9565:1568..18711696842603.0254056-CDS-E_fasciculatus_S2_contig9565:1568..1871Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9565 1569..1871 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842603.037838-UTR-E_fasciculatus_S2_contig9565:1871..21561696842603.037838-UTR-E_fasciculatus_S2_contig9565:1871..2156Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9565 1872..2156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9565.17578.1prot_E_fasciculatus_S2_contig9565.17578.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9565 1569..1871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9565.17578.1

>prot_E_fasciculatus_S2_contig9565.17578.1 ID=prot_E_fasciculatus_S2_contig9565.17578.1|Name=mRNA_E_fasciculatus_S2_contig9565.17578.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=101bp
RTRAREQRSVGALSVATQNGDVKKALDKQDGVQENLAISGIEKESVDERR
LSWHRRAIYAVTPTKLTDYSNSRDNLFHVFLAPARSGLQPVPFETYHHVT
*
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mRNA from alignment at E_fasciculatus_S2_contig9565:1569..2156+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9565.17578.1 ID=mRNA_E_fasciculatus_S2_contig9565.17578.1|Name=mRNA_E_fasciculatus_S2_contig9565.17578.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=588bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9565:1569..2156+ (Ectocarpus fasciculatus EfasUO2)
CGCACACGCGCGCGCGAACAGCGATCTGTCGGCGCGCTTTCGGTTGCCAC
GCAAAACGGCGATGTGAAGAAGGCGTTGGATAAACAAGACGGGGTACAAG
AAAACCTTGCGATCTCAGGGATCGAAAAGGAGAGCGTAGACGAACGTAGG
CTCTCTTGGCATCGTCGTGCTATCTATGCGGTCACGCCTACCAAATTGAC
AGATTATTCAAACAGCAGGGACAACCTTTTCCACGTATTTCTCGCGCCCG
CACGATCCGGTCTCCAGCCCGTACCTTTCGAGACTTACCATCACGTTACC
TAACCAAACCTCGTTGAAATCGTCCGTTTCAAAACAGAGAGTACGTGCAG
CAACGACCTCGAGGGCATCGACCGTAAGGGCGATATCTGCTGCCCGGTCG
GGTGTGGCCCGTGCAGAGGTCGAGGATGCAGCACTTCTGGTGCTTCGTAC
GGTCTTGGCGCTGAGTCTTGCTGTATACGAGTGGTGTACGATAGCGGAAG
ATACTGTGACGACACCAACGAGGCCCCGTGTATCATTGTTGGCGATGACG
ATGACGACGATAGCGACGACGACGATGGCGATGCTCCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9565:1569..2156+

>mRNA_E_fasciculatus_S2_contig9565.17578.1 ID=mRNA_E_fasciculatus_S2_contig9565.17578.1|Name=mRNA_E_fasciculatus_S2_contig9565.17578.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=303bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9565:1569..2156+ (Ectocarpus fasciculatus EfasUO2)
CGCACACGCGCGCGCGAACAGCGATCTGTCGGCGCGCTTTCGGTTGCCAC
GCAAAACGGCGATGTGAAGAAGGCGTTGGATAAACAAGACGGGGTACAAG
AAAACCTTGCGATCTCAGGGATCGAAAAGGAGAGCGTAGACGAACGTAGG
CTCTCTTGGCATCGTCGTGCTATCTATGCGGTCACGCCTACCAAATTGAC
AGATTATTCAAACAGCAGGGACAACCTTTTCCACGTATTTCTCGCGCCCG
CACGATCCGGTCTCCAGCCCGTACCTTTCGAGACTTACCATCACGTTACC
TAA
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