mRNA_E_fasciculatus_S2_contig9563.17577.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9563.17577.1
Unique NamemRNA_E_fasciculatus_S2_contig9563.17577.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9563.17577.1 vs.
Match: Lactamase_B (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3X3_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 8.600e-40
Identity = 74/80 (92.50%), Postives = 78/80 (97.50%), Query Frame = 2
Query:    2 YADVEAEAIKHGHSTPMMAAAFAQRVGARMLILNHFSARYRGDPSDASVAAMMRIERQAARAGGFERNQVVASWDLLELP 241
            YADVEAEAIKHGHSTPMMAAAFAQRVGA+ LILNHFSARYRGDPSDASVAAM+RIERQAARAGG ER+QVVASWDLLE+P
Sbjct: 1012 YADVEAEAIKHGHSTPMMAAAFAQRVGAKTLILNHFSARYRGDPSDASVAAMLRIERQAARAGGLERHQVVASWDLLEMP 1091          
BLAST of mRNA_E_fasciculatus_S2_contig9563.17577.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 5.130e-35
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 2
Query:    2 YADVEAEAIKHGHSTPMMAAAFAQRVGARMLILNHFSARYRGDPSDASVAAMMRIERQAARAGGFERNQVVASWDLLE 235
            YADVEAEAIKHGHSTPMMAAAFAQRVGA+ LILNHFSARYRGDPSDASVAAM+RIERQAARAGG ER+Q    WD LE
Sbjct:  272 YADVEAEAIKHGHSTPMMAAAFAQRVGAKTLILNHFSARYRGDPSDASVAAMLRIERQAARAGGLERHQ---GWDFLE 346          
BLAST of mRNA_E_fasciculatus_S2_contig9563.17577.1 vs.
Match: Beta-lactamase-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.620e-24
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:    2 YADVEAEAIKHGHSTPMMAAAFAQRVGARMLILNHFSARYRGDPSDASVAAMMRIERQAARAGGFERNQVVASWDLLELP 241
            YA +EA+ I HGHSTP MAA FAQRVGAR L+L HFS RY GD   +S+A M RI RQA RAGGF+R+QV  + DLL+LP
Sbjct:  404 YATIEAQTIAHGHSTPHMAARFAQRVGARALVLTHFSPRYHGDDRPSSIALMERIARQAVRAGGFKRHQVHTAHDLLQLP 483          
BLAST of mRNA_E_fasciculatus_S2_contig9563.17577.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EX78_TRICV)

HSP 1 Score: 91.7 bits (226), Expect = 1.450e-20
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   11 VEAEAIKHGHSTPMMAAAFAQRVGARMLILNHFSARYRGDPSDASVAAMMRIERQAARAGGFERNQVVASWDLLELP 241
            V  +AI HGHSTP MA  FA+RVGA+ L+LNHFS+RY+GD +  S++ MMRIE+QA +A G    +V A+WD++ LP
Sbjct:  212 VTKDAIMHGHSTPQMAGNFARRVGAKRLVLNHFSSRYKGDQTLDSMSIMMRIEKQAIKASGLPPERVAAAWDMMVLP 288          
BLAST of mRNA_E_fasciculatus_S2_contig9563.17577.1 vs.
Match: Ribonuclease (Z n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCR1_FISSO)

HSP 1 Score: 91.3 bits (225), Expect = 4.300e-20
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    2 YADVEAEAIKHGHSTPMMAAAFAQRVGARMLILNHFSARYRGDPSDASVAAMMRIERQAARAGGFERNQVVASWDLLELP 241
            + +V  +AI HGHSTP +A AF++ V  + LILNHFSARY+GD S  S++ MMRIE QA +A G    QV A+WDL+ LP
Sbjct:  269 FREVTRDAIAHGHSTPQIAGAFSKAVNGKRLILNHFSARYKGDVSVDSLSIMMRIEMQAMKASGLNETQVAAAWDLMVLP 348          
BLAST of mRNA_E_fasciculatus_S2_contig9563.17577.1 vs.
Match: Hypothetical (protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I6E0_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.110e-19
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 2
Query:   11 VEAEAIKHGHSTPMMAAAFAQRVGARMLILNHFSARYRGDPSDASVAAMMRIERQAARAGGFERNQVVASWDLLELP 241
            V  +AI HGHSTP MA  FA+RVGA+ L+LNHFS+RY+GD +  S++ M RIERQA  A G   + VVA+WD++ LP
Sbjct:  575 VTKDAIVHGHSTPQMAGLFARRVGAKRLVLNHFSSRYKGDQTVESMSIMGRIERQAIEASGLSDDTVVAAWDMMVLP 651          
BLAST of mRNA_E_fasciculatus_S2_contig9563.17577.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TGT9_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 1.340e-19
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 2
Query:    8 DVEAEAIKHGHSTPMMAAAFAQRVGARMLILNHFSARYRGDPSDASVAAMMRIERQAARAGGFERNQVVASWDLLELP 241
            ++  + ++HGHSTP MA  FA+R  A+ML+LNHFS RY+GD S AS+  M +IE  A +A G + + VVA+WD L+LP
Sbjct:   25 EIVEQTLEHGHSTPEMAGDFARRTRAKMLVLNHFSQRYKGDDSPASLEIMRQIEEIARKASGLKGHGVVAAWDQLQLP 102          
BLAST of mRNA_E_fasciculatus_S2_contig9563.17577.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNX5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.380e-19
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   11 VEAEAIKHGHSTPMMAAAFAQRVGARMLILNHFSARYRGDPSDASVAAMMRIERQAARAGGFERNQVVASWDLLELP 241
            V  +A  HGHSTP +A  FA+R+ AR L++NHFSARY+GD S  S++ M RIE QAA++ G  R +V A+WD + LP
Sbjct:   92 VAKDAKAHGHSTPFIAGEFARRIKARKLVINHFSARYKGDQSLESMSIMSRIEGQAAKSSGLSREEVAAAWDFMILP 168          
BLAST of mRNA_E_fasciculatus_S2_contig9563.17577.1 vs.
Match: Ribonuclease (Z n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3N8_FISSO)

HSP 1 Score: 90.9 bits (224), Expect = 1.430e-19
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    2 YADVEAEAIKHGHSTPMMAAAFAQRVGARMLILNHFSARYRGDPSDASVAAMMRIERQAARAGGFERNQVVASWDLLELP 241
            + +V  +AI HGHSTP +A AF + V  + LILNHFSARY+GD S  S++ MMRIE QA +A G    QV A+WDL+ LP
Sbjct:  446 FREVTRDAITHGHSTPQIAGAFCKAVNGKRLILNHFSARYKGDVSVDSLSIMMRIEMQAMKASGLNETQVAAAWDLMVLP 525          
BLAST of mRNA_E_fasciculatus_S2_contig9563.17577.1 vs.
Match: Hypothetical (protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2L2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.370e-19
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   11 VEAEAIKHGHSTPMMAAAFAQRVGARMLILNHFSARYRGDPSDASVAAMMRIERQAARAGGFERNQVVASWDLLELP 241
            +E + I+HGHSTP MAA FA+ +GA+ L+L HFSARY+GD    S++ M  IE+ A +A     +QVVA+WD + LP
Sbjct:   31 LERDTIRHGHSTPEMAAQFARAIGAKKLVLTHFSARYKGDAQFDSISVMTIIEKIALKAADMRDDQVVAAWDFMSLP 107          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9563.17577.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Lactamase_B8.600e-4092.50domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Uncharacterized5.130e-3587.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Beta-lactamase-like3.620e-2465.00protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical1.450e-2055.84protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Ribonuclease4.300e-2055.00Z n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=... [more]
Hypothetical1.110e-1957.14protein n=2 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical1.340e-1951.28protein n=1 Tax=Lotharella oceanica TaxID=641309 R... [more]
Hypothetical1.380e-1953.25protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
Ribonuclease1.430e-1955.00Z n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=... [more]
Hypothetical4.370e-1950.65protein n=1 Tax=Thalassionema nitzschioides TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9563contigE_fasciculatus_S2_contig9563:4628..5417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size246
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842602.9757621-CDS-E_fasciculatus_S2_contig9563:4628..46631696842602.9757621-CDS-E_fasciculatus_S2_contig9563:4628..4663Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9563 4629..4663 -
1696842602.9930072-CDS-E_fasciculatus_S2_contig9563:5209..54171696842602.9930072-CDS-E_fasciculatus_S2_contig9563:5209..5417Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9563 5210..5417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9563.17577.1prot_E_fasciculatus_S2_contig9563.17577.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9563 4629..5417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9563.17577.1

>prot_E_fasciculatus_S2_contig9563.17577.1 ID=prot_E_fasciculatus_S2_contig9563.17577.1|Name=mRNA_E_fasciculatus_S2_contig9563.17577.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=81bp
LRGRRGRSHQARPQHAHDGGRLRPAGGGQDAHPQPLLGALQGRPVRRERC
GDDEDRAPGREGGGLRAKPGGRVVGPSGAAR
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mRNA from alignment at E_fasciculatus_S2_contig9563:4628..5417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9563.17577.1 ID=mRNA_E_fasciculatus_S2_contig9563.17577.1|Name=mRNA_E_fasciculatus_S2_contig9563.17577.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=790bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9563:4628..5417- (Ectocarpus fasciculatus EfasUO2)
CTACGCGGACGTCGAGGCCGAAGCCATCAAGCACGGCCACAGCACGCCCA TGATGGCGGCCGCCTTCGCCCAGCGGGTGGGGGCCAGGATGCTCATCCTC AACCACTTCTCGGCGCGCTACAGGGGCGACCCGTCCGACGCGAGCGTTGC GGCGATGATGAGGATCGAGCGCCAGGCCGCGAGGGCGGGGGGCTTCGAGC GAAACCAGGTGATTGTCGTTGTCCGCTCGTTCGTTCGGGCAATCGTTTTT GTCTCTTCTTGTTCTTGATTACAACAGAGGCACTTGTCAAGCTGGCTTGC ATGTTCTTTTGTCTCGTTTACTGCTACGGGGTATATGGTGGAGGGTCAAG GGCTATTTGGGGTGGGAGGGGGGTCTGTGCTCACAGGAGAAGGGCGCGGT TTCGCGCGCTCGTCTAGGGGGGGAGGGGGTTACAAAGCGTGGTTTTTGTG CGAGGTCTCTATGGCCCAAGAGATTCTTCGGAAGATCGTTTTTTGTACCT GATACTCCTTTGTTGTCTACACCGCGCCGTATTGACCTTGGGGTGGTGAC ATGACGGCACAAGCGGCTCGCTTCGAAGTACACTATAAATGGCCGCGGGC GGGTGTTTGAGAGACAGTACAAGCAGGTTCCCCGTTCCCGTTGAGAAGAA GTTGTTTGGGCGGTCCATGCCATCTTGCTTGTCGAAGAAACGCTCACACG CACACTTTTGTTTCGTCGGTCCATGCACCACCCACTCACACAACAACGCA ACAGGTGGTCGCGTCGTGGGACCTTCTGGAGCTGCCCGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9563:4628..5417-

>mRNA_E_fasciculatus_S2_contig9563.17577.1 ID=mRNA_E_fasciculatus_S2_contig9563.17577.1|Name=mRNA_E_fasciculatus_S2_contig9563.17577.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=243bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9563:4628..5417- (Ectocarpus fasciculatus EfasUO2)
CTACGCGGACGTCGAGGCCGAAGCCATCAAGCACGGCCACAGCACGCCCA
TGATGGCGGCCGCCTTCGCCCAGCGGGTGGGGGCCAGGATGCTCATCCTC
AACCACTTCTCGGCGCGCTACAGGGGCGACCCGTCCGACGCGAGCGTTGC
GGCGATGATGAGGATCGAGCGCCAGGCCGCGAGGGCGGGGGGCTTCGAGC
GAAACCAGGTGGTCGCGTCGTGGGACCTTCTGGAGCTGCCCGT
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