mRNA_E_fasciculatus_S2_contig953.17553.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig953.17553.1
Unique NamemRNA_E_fasciculatus_S2_contig953.17553.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig953.17553.1 vs.
Match: Similar (to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 1.760e-124
Identity = 230/291 (79.04%), Postives = 238/291 (81.79%), Query Frame = 1 
Query:  370 GYDCLICGKSFSKASKLVRHAATHTGEKPFVCSETGXXXXXXXXXXXXXXXXXXXRRKAGLSTSVGDAARREAETRQRAAAFVANAAAAGVSLEEPGAGWARTPRRVLPLMKTAKAPLLEASRLERERAAKGSXXXXXGAQGWRFNCGTCGRNFLDNYHLQRHIKAIHDAPRPYVCDHPVVVSPRTAQSGGSAADGAGAAVSIVSPGAGLASPRTRCERHGEDVVAEARGEAKGGKGMARAKGSMGGVEAEGGATERGLQQQXXXXXXXXXXXRVLGVCGASFAKKWQLRE 1242
            GY+CLICGKSFSKA KL RHAATHTGEKPFVCSE GXXXXXXXXXXXXXXXXXXXRRKAGLSTSVGDAARREAETRQRAAAFVA AAAAGVSLEEPGAG    PRRVLPLMKT  APLLEASRLERERA  GS     GAQGW+F CG CGRNFLDNYHLQRHIKAIH+APRPY CDHPVVV P TA S  S ADG  AA +   PG      R RCER GE+VVAEARGEAK GK ++RAKGS+GGVEAEGGATERGLQQQ           RVLGVCGASFAKKWQLRE
Sbjct:   76 GYECLICGKSFSKACKLARHAATHTGEKPFVCSEAGXXXXXXXXXXXXXXXXXXXRRKAGLSTSVGDAARREAETRQRAAAFVAEAAAAGVSLEEPGAGGIGAPRRVLPLMKTTTAPLLEASRLERERAVNGSGSGGGGAQGWKFTCGNCGRNFLDNYHLQRHIKAIHEAPRPYTCDHPVVVPPPTAPSAASVADGTAAAFATAFPGGS----RARCERQGEEVVAEARGEAKEGKDVSRAKGSVGGVEAEGGATERGLQQQPQQKQQ-----RVLGVCGASFAKKWQLRE 357
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BLAST of mRNA_E_fasciculatus_S2_contig953.17553.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BG45_9AGAR)

HSP 1 Score: 52.4 bits (124), Expect = 3.940e-5
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:  373 YDCLICGKSFSKASKLVRHAATHTGEKPFVCSETG 477
            ++C ICGK FS+ S L  H  THTGEKP+VCSE G
Sbjct:   27 HECNICGKRFSRPSGLKIHVTTHTGEKPYVCSEDG 61
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig953.17553.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Similar1.760e-12479.04to metal response element-binding transcription fa... [more]
Uncharacterized3.940e-562.86protein n=1 Tax=Cylindrobasidium torrendii FP15055... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig953contigE_fasciculatus_S2_contig953:2..1720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1242
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionZinc finger C2H2-type/integrase DNA-binding domain
Ec32 orthologEc-24_001700.1
Cds size1242
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842600.6845756-CDS-E_fasciculatus_S2_contig953:1..7671696842600.6845756-CDS-E_fasciculatus_S2_contig953:1..767Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig953 2..767 -
1696842600.6994548-CDS-E_fasciculatus_S2_contig953:1244..17201696842600.6994548-CDS-E_fasciculatus_S2_contig953:1244..1720Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig953 1245..1720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig953.17553.1prot_E_fasciculatus_S2_contig953.17553.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig953 2..1720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig953.17553.1

>prot_E_fasciculatus_S2_contig953.17553.1 ID=prot_E_fasciculatus_S2_contig953.17553.1|Name=mRNA_E_fasciculatus_S2_contig953.17553.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=414bp
MASVGLMQRVDPVHGGPCKRRRPYQDAGAARSVPATSRQRTLARKLPQRD
VDGEEETADEASGDSDSGSEYQEDDDDDDEEEDEAPAARQQAPAVQQQRR
HQGRVVSRRSAGAGSSWGGGSGGGYDCLICGKSFSKASKLVRHAATHTGE
KPFVCSETGCGKAFATKDKLERHALSHARRKAGLSTSVGDAARREAETRQ
RAAAFVANAAAAGVSLEEPGAGWARTPRRVLPLMKTAKAPLLEASRLERE
RAAKGSGSGGGGAQGWRFNCGTCGRNFLDNYHLQRHIKAIHDAPRPYVCD
HPVVVSPRTAQSGGSAADGAGAAVSIVSPGAGLASPRTRCERHGEDVVAE
ARGEAKGGKGMARAKGSMGGVEAEGGATERGLQQQQQQQQQQQQQQRVLG
VCGASFAKKWQLRE
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mRNA from alignment at E_fasciculatus_S2_contig953:2..1720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig953.17553.1 ID=mRNA_E_fasciculatus_S2_contig953.17553.1|Name=mRNA_E_fasciculatus_S2_contig953.17553.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1719bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig953:2..1720- (Ectocarpus fasciculatus EfasUO2)
ATGGCTTCTGTAGGACTTATGCAACGTGTGGATCCGGTTCATGGCGGGCC
TTGCAAACGGCGCCGTCCCTACCAGGATGCGGGGGCGGCGAGGTCCGTCC
CGGCAACCTCGCGACAACGCACTCTTGCCCGTAAACTGCCGCAGCGGGAT
GTAGATGGAGAGGAGGAGACAGCAGACGAAGCGAGCGGTGACAGCGATAG
CGGAAGTGAGTACCAAGAAGACGATGACGACGACGACGAGGAAGAGGACG
AGGCACCCGCAGCACGGCAACAGGCACCCGCGGTACAGCAACAGCGGCGT
CATCAGGGGCGAGTGGTGTCTCGACGCTCTGCTGGCGCCGGCAGCAGCTG
GGGGGGTGGCAGTGGTGGTGGATACGATTGCCTGATCTGTGGCAAGTCGT
TTAGCAAGGCCTCCAAGCTGGTACGGCACGCCGCGACACACACCGGGGAG
AAACCATTCGTATGCAGCGAAACTGGGTAAGTGAGAGTTTGCCGCGTATT
TTTCATGCGGCGTTACCAGAGAATGATTGTAAACCTTTGGCGGCGAACGC
TTCCGTCAGCGTGGTACGCCGCGCACCGCACACAGCGCGGCCTTTGGGCG
GCAGGTATCCCCTCCACCCTTCAAACCCTCCATCACGACCAAACCAAACG
CCAACACGACCGCGTCTCACGCAAGCTACAGGAGTGATATCGATTGTAGC
AAAACGCTTGGAACCCAAGGATCGACAAGCAGCTATTGCAGTACTTCGTG
CTTAAAAAAAGCGGAGGAAATATGTATGCGGCCGTCCTCTACGGAATCAC
GAAGCCAGACACTGGGCAGCACAAAGCAGAGTCGAGGTTACGTCCTTTCT
CCACTTGCCATTCACTCCTTCATCTGTGTTGAGAGACCACCCAAGCAACC
TCTCCTTCCCCTATCTCTCTCTCTCTCTCTCTCTCGCGACCTTGGGATTT
CAGCTGCGGCAAGGCGTTCGCGACCAAGGACAAGCTCGAGCGACACGCCC
TCTCCCACGCCCGCCGGAAGGCCGGTCTCTCGACGTCCGTGGGCGATGCC
GCCCGCCGCGAAGCCGAAACCCGACAACGCGCGGCCGCTTTCGTCGCCAA
TGCCGCAGCAGCGGGCGTCTCGCTGGAGGAGCCGGGGGCGGGGTGGGCAA
GGACGCCTCGGCGTGTACTCCCTTTGATGAAGACGGCCAAAGCTCCGCTC
TTGGAGGCGTCGAGATTGGAGAGGGAGCGGGCGGCGAAAGGTTCCGGCAG
CGGAGGCGGCGGGGCTCAAGGGTGGAGGTTCAACTGCGGGACCTGTGGGA
GAAACTTCTTGGACAACTACCACCTCCAGCGCCACATCAAGGCCATCCAC
GACGCCCCTCGCCCGTACGTCTGCGACCACCCAGTCGTGGTGTCTCCACG
AACAGCCCAATCTGGCGGTAGCGCAGCAGATGGCGCCGGTGCGGCCGTTT
CCATCGTGTCTCCTGGCGCCGGCCTTGCGTCTCCGCGGACGAGGTGCGAG
CGGCACGGAGAGGATGTTGTCGCTGAAGCACGCGGGGAGGCGAAAGGAGG
GAAGGGCATGGCAAGGGCGAAAGGGTCGATGGGAGGAGTGGAGGCTGAAG
GGGGTGCCACAGAACGGGGGCTTCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCGGGTGCTTGGGGTGTGCGGCGCGTCGTTTGCGAA
GAAGTGGCAGCTGCGGGAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig953:2..1720-

>mRNA_E_fasciculatus_S2_contig953.17553.1 ID=mRNA_E_fasciculatus_S2_contig953.17553.1|Name=mRNA_E_fasciculatus_S2_contig953.17553.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1242bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig953:2..1720- (Ectocarpus fasciculatus EfasUO2)
ATGGCTTCTGTAGGACTTATGCAACGTGTGGATCCGGTTCATGGCGGGCC
TTGCAAACGGCGCCGTCCCTACCAGGATGCGGGGGCGGCGAGGTCCGTCC
CGGCAACCTCGCGACAACGCACTCTTGCCCGTAAACTGCCGCAGCGGGAT
GTAGATGGAGAGGAGGAGACAGCAGACGAAGCGAGCGGTGACAGCGATAG
CGGAAGTGAGTACCAAGAAGACGATGACGACGACGACGAGGAAGAGGACG
AGGCACCCGCAGCACGGCAACAGGCACCCGCGGTACAGCAACAGCGGCGT
CATCAGGGGCGAGTGGTGTCTCGACGCTCTGCTGGCGCCGGCAGCAGCTG
GGGGGGTGGCAGTGGTGGTGGATACGATTGCCTGATCTGTGGCAAGTCGT
TTAGCAAGGCCTCCAAGCTGGTACGGCACGCCGCGACACACACCGGGGAG
AAACCATTCGTATGCAGCGAAACTGGCTGCGGCAAGGCGTTCGCGACCAA
GGACAAGCTCGAGCGACACGCCCTCTCCCACGCCCGCCGGAAGGCCGGTC
TCTCGACGTCCGTGGGCGATGCCGCCCGCCGCGAAGCCGAAACCCGACAA
CGCGCGGCCGCTTTCGTCGCCAATGCCGCAGCAGCGGGCGTCTCGCTGGA
GGAGCCGGGGGCGGGGTGGGCAAGGACGCCTCGGCGTGTACTCCCTTTGA
TGAAGACGGCCAAAGCTCCGCTCTTGGAGGCGTCGAGATTGGAGAGGGAG
CGGGCGGCGAAAGGTTCCGGCAGCGGAGGCGGCGGGGCTCAAGGGTGGAG
GTTCAACTGCGGGACCTGTGGGAGAAACTTCTTGGACAACTACCACCTCC
AGCGCCACATCAAGGCCATCCACGACGCCCCTCGCCCGTACGTCTGCGAC
CACCCAGTCGTGGTGTCTCCACGAACAGCCCAATCTGGCGGTAGCGCAGC
AGATGGCGCCGGTGCGGCCGTTTCCATCGTGTCTCCTGGCGCCGGCCTTG
CGTCTCCGCGGACGAGGTGCGAGCGGCACGGAGAGGATGTTGTCGCTGAA
GCACGCGGGGAGGCGAAAGGAGGGAAGGGCATGGCAAGGGCGAAAGGGTC
GATGGGAGGAGTGGAGGCTGAAGGGGGTGCCACAGAACGGGGGCTTCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGTGCTTGGG
GTGTGCGGCGCGTCGTTTGCGAAGAAGTGGCAGCTGCGGGAA
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