mRNA_E_fasciculatus_S2_contig9510.17543.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9510.17543.1
Unique NamemRNA_E_fasciculatus_S2_contig9510.17543.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9510.17543.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ6_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 1.740e-129
Identity = 203/232 (87.50%), Postives = 213/232 (91.81%), Query Frame = 3 
Query:    3 TMDAGEVPVAMGSAEGGDEVTGAALADMLSGIGISDNASGNA-AXXXXXXXXXXXXXXXXXXXXDYVDGEENEVELPPEVMKRLYELKALQSEKDVIYEKYKAKRAELELEFAKEYGAIYSRRAEVVAGKSRDIDDPEPELGAQGEGGTGGEAAGGEVGVPHFWMQCMLHHEALHDVVCEPDLEALYYLSDVRCVDKDTLLGFTLHFHFDDNPYFTNAVLTKRYDTANIMDQ 695
            TM AG+VPVAM SA+GGDEVTGAALA+MLSGIGISDNASG+A +             XXXXXXXDYVDGE+NEVELPPEVMKRLYELKALQSEKDVIY KYKAKRAELE+EFAKEYGAIYSRRAEVVAG+SRDIDDPEPELGAQGEGG GGEAAGGEVGVPHFWMQCMLHHEALHDV+CEPDLEALYYLSDVRCVDKDTLLGFTL FHFDDNPYF+NAVLTKRYDTANIMDQ
Sbjct:   45 TMGAGDVPVAMDSAQGGDEVTGAALANMLSGIGISDNASGDAVSATPRSGGGQGVDQXXXXXXXDYVDGEDNEVELPPEVMKRLYELKALQSEKDVIYGKYKAKRAELEMEFAKEYGAIYSRRAEVVAGRSRDIDDPEPELGAQGEGGAGGEAAGGEVGVPHFWMQCMLHHEALHDVICEPDLEALYYLSDVRCVDKDTLLGFTLEFHFDDNPYFSNAVLTKRYDTANIMDQ 276
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9510.17543.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV21_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 6.020e-40
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 3 
Query:  492 MQCMLHHEALHDVVCEPDLEALYYLSDVRCVDKDTLLGFTLHFHFDDNPYFTNAVLTKRYDTANIMDQ 695
            MQCMLHHEALHDV+CEPDLEALYYLSDVRCVDKD LLGFTL FHFDDNPYFTNAVLTKRYDTANIMDQ
Sbjct:    1 MQCMLHHEALHDVICEPDLEALYYLSDVRCVDKDNLLGFTLEFHFDDNPYFTNAVLTKRYDTANIMDQ 68
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9510.17543.1 vs.
Match: Nucleosome (assembly protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG27_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.900e-35
Identity = 77/170 (45.29%), Postives = 110/170 (64.71%), Query Frame = 3 
Query:  192 DYVDGEENE-VELPPEVMKRLYELKALQSEKDVIYEKYKAKRAELELEFAKEYGAIYSRRAEVVAGKSRDIDDPEPELGAQGEGGTGGEAAGGEV-GVPHFWMQCMLHHEALHDVVCEPDLEALYYLSDVRCVDKDTLLGFTLHFHFDDNPYFTNAVLTKRYDTANIMDQ 695
            D  D E+ + V LP  V++R+  LK LQ ++D IYE+YKA R  LE E+ K Y  +Y  R ++V+G +++++  E E G   E    G   G +V GVP FW   M+ HEAL D++ E D+ AL +L+DV+C+D++ L+GF L FHF  N +FTN+VLTK YD A I+DQ
Sbjct:   47 DVYDAEDGDRVVLPHSVLRRIDALKDLQGKRDDIYEEYKAARRVLEAEYRKRYDVLYQERCDIVSG-NKEVEKTESEAGDDEE--AHGADQGEDVKGVPSFWANAMIRHEALQDLIEESDVTALAHLTDVKCIDREDLMGFRLEFHFSPNEFFTNSVLTKTYDVAQILDQ 213
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9510.17543.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.440e-34
Identity = 69/166 (41.57%), Postives = 109/166 (65.66%), Query Frame = 3 
Query:  201 DGEENE--VELPPEVMKRLYELKALQSEKDVIYEKYKAKRAELELEFAKEYGAIYSRRAEVVAGKSRDIDDPEPELGAQGEGGTGGEAAGGEVGVPHFWMQCMLHHEALHDVVCEPDLEALYYLSDVRCVDKDTLLGFTLHFHFDDNPYFTNAVLTKRYDTANIMD 692
            D EE++  +++PP V +R+  LK LQ  ++V+ E+Y+ +RAELE +F +EY  ++ +RA++VAG+   +D  +PE   + EG    E     +G+P FW+  +LH+E++ D++ + D+ AL YL D+ C DK  L GF L FHF  NP+F N VL+K YD A+I+D
Sbjct:   94 DPEEDDGTMQIPPSVYRRILALKELQDAREVVQERYRRERAELEAKFRQEYEPLFIKRADIVAGR---LDVQKPEPAPESEGADAEEEGDDVMGIPQFWLMVLLHNESVVDLITQDDVPALEYLVDITCEDKVDLTGFRLDFHFAPNPFFKNEVLSKAYDMASIVD 256
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9510.17543.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8H1D7_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.880e-23
Identity = 62/165 (37.58%), Postives = 93/165 (56.36%), Query Frame = 3 
Query:  225 LPPEVMKRLYELKALQSEKDVIYEKYKAKRAELELEFAKEYGAIYSRRAEVVAGKSRDIDDPEPELGAQGE----------GGTGGEAAGGEVGVPHFWMQCMLHHEALHDVVCEPDLEALYYLSDVRCVDKDTLLGFTLHFHFDDNPYFTNAVLTKRYDTANIM 689
            +P  ++KR+ +LK L   +D+I + Y  +RAELE ++      +Y  RAE+VAGK     D E + GA+                 EA     G+P FW+  M H EA+ +++ E D++ L Y +D+RC D +  +GFTL FHF  N YF+N +LTKRYD  N++
Sbjct:   68 MPDYMVKRVEKLKDLNDRRDIIMKDYLRERAELENKYFGVCKPMYVTRAEIVAGKM----DDEIKAGAKAAVXXXXXXXXXXKASEEAVDNVTGIPQFWVCAMGHMEAVAELITEQDVDCLEYCTDIRCNDDEDGMGFTLCFHFSPNEYFSNEMLTKRYDIPNLL 228
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9510.17543.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2KVP3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 9.550e-21
Identity = 59/157 (37.58%), Postives = 92/157 (58.60%), Query Frame = 3 
Query:  228 PPEVMKRLYELKALQSEKDVIYEKYKAKRAELELEFAKEYGAIYSRRAEVVAGKSRDIDDPEPELGAQGEGGTGGEAAGG--EV-GVPHFWMQCMLHHEALHDVVCEPDLEALYYLSDVRCVDKDTLLGFTLHFHFDDNPYFTNAVLTKRYDTANIM 689
            PP+V++R+ +LK L S+++ I  +Y  +RA LE +FA     ++ +R +V+ GK     D E E  A+ +            EV G+P FW+  M H EA+ +++ + D++ L +L +V C D D   GFT+ FHF  NPYFTN VLTK+Y   N++
Sbjct:  147 PPKVVRRVNKLKELHSQREEIMNEYLVERAALEKKFAVLCKPLFEQRLDVIEGKL----DEEIEKNAETDXXXXXXXXXXXXEVKGIPQFWVCAMGHMEAVAELITQSDVDCLEHLRNVTCDDDDDGCGFTISFHFGPNPYFTNTVLTKKYQIPNLL 299
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9510.17543.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQ11_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.530e-19
Identity = 54/153 (35.29%), Postives = 90/153 (58.82%), Query Frame = 3 
Query:  249 LYELKALQSEKDVIYEKYKAKRAELELEFAKEYGAIYSRRAEVVAGKSRDIDDPEPELGAQGEGGTGGEAAGGE----VGVPHFWMQCMLHHEALHDVVCEPDLEALYYLSDVRCVDKDTLLGFTLHFHFDDNPYFTNAVLTKRYDTANIMDQ 695
            L +LK+L  +++ + E+Y+ +R  LE ++      IY +RA+VV+G+ +    PE ++G             GE     GV  FW+  M H   + +++ E D EAL YL D++C D + + GF++ FHF +NPYF+N VLTKRY+ +N++ +
Sbjct:  118 LAKLKSLHEDREKLMEEYETERCALEKKYRDLLHPIYDQRAKVVSGELKVT--PE-DVGIDAASXXXXXXXEGENENSQGVEKFWLGAMAHVMPIAELLEEDDTEALAYLRDIQCHDNEDMSGFSIQFHFRENPYFSNDVLTKRYEVSNLLKE 267
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9510.17543.1 vs.
Match: Uncharacterized (protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S0Z8_SELML)

HSP 1 Score: 89.0 bits (219), Expect = 2.780e-17
Identity = 55/157 (35.03%), Postives = 81/157 (51.59%), Query Frame = 3 
Query:  225 LPPEVMKRLYELKALQSEKDVIYEKYKAKRAELELEFAKEYGAIYSRRAEVVAGKSRDIDDPEPELGAQGEGGTGGEAAGGEVGVPHFWMQCMLHHEALHDVVCEPDLEALYYLSDVRCVDKDTLLGFTLHFHFDDNPYFTNAVLTKRYDTANIMDQ 695
            LP +V +R+  L+ +Q E D I  K+K +R EL  ++   Y  +Y +RA +V   S +   P+             EAA    GVP FW+  +  +E +   + E D  AL YL D++     +  GF L F+FD+NPYFTN+VLTK Y      D+
Sbjct:   25 LPEDVKQRVNSLQEIQKEHDEIEAKFKKEREELITKYQNLYAPLYEKRASIVNASSAEETKPD-------------EAASN--GVPEFWLGALKANEIVAVQITERDQGALKYLKDIKSYYVSSPKGFKLEFYFDENPYFTNSVLTKEYHMEEDDDE 166
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9510.17543.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6B2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.720e-17
Identity = 51/162 (31.48%), Postives = 86/162 (53.09%), Query Frame = 3 
Query:  225 LPPEVMKRLYELKALQSEKDVIYEKYKAKRAELELEFAKEYGAIYSRRAEVVAG------KSRDIDDPEPELGAQGEGGTGGEAAGGEV-GVPHFWMQCMLHHEALHDVVCEPDLEALYYLSDVRCVDKDTLLGFTLHFHFDDNPYFTNAVLTKRYDTANIM 689
            LP  V+ R+ +L+ L  +++ + E+Y  +RA LE ++A +   +Y  RA ++ G      +  +   P+ E   +       E    ++ GVP FW+  M   E + +++ E D++ L +L D+ C D D   GFTL F F  N YF+N +LTKRY+  N+ 
Sbjct:   32 LPAYVVPRVAKLQELDEQREKVMEEYLEERATLEKKYAAQLQPLYKTRACIIRGDRDEEIEKEESSRPKDEKKEEPTPAVDEETTSEKIKGVPQFWICAMTQMETVGELITEEDVDCLEHLQDITCEDDDDGKGFTLCFTFGPNEYFSNTILTKRYEVPNLF 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9510.17543.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S6E1_OSTLU)

HSP 1 Score: 87.0 bits (214), Expect = 2.500e-16
Identity = 58/167 (34.73%), Postives = 87/167 (52.10%), Query Frame = 3 
Query:  222 ELPPEVMKRLYELKALQSEKDVIYEKYKAKRAELELEFAKEYGAIYSRRAEVVAG-KSRDIDDPEPELGAQGEGGTGGEAAGGEVGVPHFWMQCMLHHEALHDVVCEPDLEALYYLSDVRCV-------DKDTLLGFTLHFHFDDNPYFTNAVLTKRYDTANIMDQV 698
            EL P V  R+  L+ LQ   D ++E Y  ++  LE ++A  Y  +Y  R+E+V G K   + D + EL A+ E     +A     GVP FWM  + ++E L  ++ E D  AL +L D+          D D L GF + FHF++N YF ++VLTK Y   +  D +
Sbjct:   34 ELHPRVRARVKALEKLQEAHDGVHEAYLEEKKALEAKYAALYAPMYKARSEIVTGAKEAAVPDDDEELKAEIEAAAK-DAVEAPKGVPEFWMIALKNNEELAQMITERDEGALKHLIDITTSALEGEDEDGDELCGFKIDFHFEENEYFEDSVLTKTYHMDDEEDNL 199
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9510.17543.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.740e-12987.50protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.020e-4095.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Nucleosome3.900e-3545.29assembly protein-domain-containing protein n=1 Tax... [more]
Hypothetical1.440e-3441.57protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical1.880e-2337.58protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Hypothetical9.550e-2137.58protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical5.530e-1935.29protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Uncharacterized2.780e-1735.03protein n=3 Tax=Selaginella moellendorffii TaxID=8... [more]
Hypothetical5.720e-1731.48protein n=1 Tax=Amphora coffeiformis TaxID=265554 ... [more]
Uncharacterized2.500e-1634.73protein n=2 Tax=Ostreococcus sp. 'lucimarinus' Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9510contigE_fasciculatus_S2_contig9510:338..5761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score379.8
Seed ortholog evalue9.3e-103
Seed eggNOG ortholog2880.D7FXQ6
Preferred nameNAP1L1
Model size710
KEGG rclassRC00055,RC00523
KEGG koko:K01890,ko:K10357,ko:K11279,ko:K11280,ko:K11281,ko:K11282,ko:K11283,ko:K11290,ko:K11405
KEGG ReactionR03660
KEGG Pathwayko00970,ko05034,ko05165,ko05203,map00970,map05034,map05165,map05203
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000785,GO:0000790,GO:0002376,GO:0002520,GO:0003006,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0005856,GO:0005933,GO:0005935,GO:0005938,GO:0005940,GO:0006139,GO:0006259,GO:0006260,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006337,GO:0006338,GO:0006355,GO:0006357,GO:0006606,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0007114,GO:0007117,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007338,GO:0007399,GO:0007610,GO:0007611,GO:0007613,GO:0007617,GO:0007618,GO:0007619,GO:0008047,GO:0008049,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008289,GO:0009058,GO:0009059,GO:0009566,GO:0009719,GO:0009725,GO:0009790,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010638,GO:0010720,GO:0014009,GO:0014010,GO:0015031,GO:0015485,GO:0015833,GO:0016006,GO:0016043,GO:0017038,GO:0019098,GO:0019219,GO:0019222,GO:0019899,GO:0019900,GO:0019953,GO:0019954,GO:0022008,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030234,GO:0030332,GO:0030425,GO:0030427,GO:0030447,GO:0030448,GO:0031056,GO:0031058,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031399,GO:0031401,GO:0031491,GO:0031497,GO:0031498,GO:0031974,GO:0031981,GO:0032156,GO:0032168,GO:0032200,GO:0032268,GO:0032270,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032784,GO:0032786,GO:0032870,GO:0032886,GO:0032934,GO:0032968,GO:0032984,GO:0032986,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034243,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034724,GO:0034728,GO:0035039,GO:0035041,GO:0035065,GO:0035066,GO:0035092,GO:0035162,GO:0036094,GO:0036477,GO:0040007,GO:0042063,GO:0042127,GO:0042221,GO:0042393,GO:0042592,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043085,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043434,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044454,GO:0044463,GO:0044464,GO:0044703,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046907,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048522,GO:0048534,GO:0048568,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051082,GO:0051094,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051301,GO:0051302,GO:0051493,GO:0051495,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0060179,GO:0060215,GO:0060249,GO:0060255,GO:0060284,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070507,GO:0070727,GO:0070887,GO:0070925,GO:0071103,GO:0071310,GO:0071375,GO:0071417,GO:0071440,GO:0071442,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071944,GO:0072594,GO:0080090,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0098772,GO:0099568,GO:0120025,GO:0120038,GO:1901360,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901983,GO:1901985,GO:1902275,GO:1902680,GO:1902903,GO:1902905,GO:1903506,GO:1903508,GO:1905269,GO:2000026,GO:2000035,GO:2000112,GO:2000615,GO:2000617,GO:2000756,GO:2000758,GO:2001141,GO:2001252
Exons7
EggNOG free text desc.Belongs to the nucleosome assembly protein (NAP) family
EggNOG OGsKOG1507@1,KOG1507@2759
Ec32 ortholog descriptionNucleosome assembly protein (NAP)
Ec32 orthologEc-28_001750.1
EC3.5.1.98,6.1.1.20
Cds size705
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03019,ko03029,ko03036,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9510.17543.1prot_E_fasciculatus_S2_contig9510.17543.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9510 343..5761 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842599.7673767-UTR-E_fasciculatus_S2_contig9510:337..3421696842599.7673767-UTR-E_fasciculatus_S2_contig9510:337..342Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9510 338..342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842599.7812514-CDS-E_fasciculatus_S2_contig9510:342..3971696842599.7812514-CDS-E_fasciculatus_S2_contig9510:342..397Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9510 343..397 +
1696842599.7920654-CDS-E_fasciculatus_S2_contig9510:2067..21271696842599.7920654-CDS-E_fasciculatus_S2_contig9510:2067..2127Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9510 2068..2127 +
1696842599.8026285-CDS-E_fasciculatus_S2_contig9510:2574..26601696842599.8026285-CDS-E_fasciculatus_S2_contig9510:2574..2660Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9510 2575..2660 +
1696842599.8136232-CDS-E_fasciculatus_S2_contig9510:3034..31151696842599.8136232-CDS-E_fasciculatus_S2_contig9510:3034..3115Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9510 3035..3115 +
1696842599.822973-CDS-E_fasciculatus_S2_contig9510:3486..36041696842599.822973-CDS-E_fasciculatus_S2_contig9510:3486..3604Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9510 3487..3604 +
1696842599.8332055-CDS-E_fasciculatus_S2_contig9510:4203..43331696842599.8332055-CDS-E_fasciculatus_S2_contig9510:4203..4333Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9510 4204..4333 +
1696842599.8438005-CDS-E_fasciculatus_S2_contig9510:5586..57611696842599.8438005-CDS-E_fasciculatus_S2_contig9510:5586..5761Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9510 5587..5761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9510.17543.1

>prot_E_fasciculatus_S2_contig9510.17543.1 ID=prot_E_fasciculatus_S2_contig9510.17543.1|Name=mRNA_E_fasciculatus_S2_contig9510.17543.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=235bp
MDAGEVPVAMGSAEGGDEVTGAALADMLSGIGISDNASGNAAAARGGGGQ
DVDEDDDDDDDEDYVDGEENEVELPPEVMKRLYELKALQSEKDVIYEKYK
AKRAELELEFAKEYGAIYSRRAEVVAGKSRDIDDPEPELGAQGEGGTGGE
AAGGEVGVPHFWMQCMLHHEALHDVVCEPDLEALYYLSDVRCVDKDTLLG
FTLHFHFDDNPYFTNAVLTKRYDTANIMDQVRLG*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9510:338..5761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9510.17543.1 ID=mRNA_E_fasciculatus_S2_contig9510.17543.1|Name=mRNA_E_fasciculatus_S2_contig9510.17543.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5424bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9510:338..5761+ (Ectocarpus fasciculatus EfasUO2)
GGACGATGGACGCAGGGGAGGTCCCCGTGGCAATGGGCTCTGCTGAAGGT
GGAGACGAAGGTGAGACGCGGGGATGTTGGGAGTCGAATCAGACGGAACC
AGTTCCGGCACGGAATACTACCAGCTGCGAGCCCCCCAAGATACTTGGAA
TCGGTACGCCCGTTGGCACTTGTCTCTTCGAACAACCAAAACCTCTCAAA
AGAACGCTATAATAGAGGACAGGAAGCAATGAAGGTAGGTAGGTAGGTAG
GTAGGTAGGTACCCACGTGTTAGCACTACGGGCCCCGCGCTTGTGATATT
GTACTTTTGTATTTTTTGGACGATTCGCTCAAGCCGAGTGTGATCAATGT
AAGTGATACATTTCATTCTTTGGACGACTTTTTGCTGAAGCCCGAGTGTG
ATGTGACCAATGCTGCCTCAAGACTGGTCGATACAGAATCAAGAAATCAT
TGTACCGTACAGCAGTACCAGTACCGAGGGGACGCAAGATACCACACCCC
CTGAAAATACCACACCGCCTGGACTGCTTTTCAATGCTTGGTTGCTCTGC
AGCACAGGCATATAATGATGGTGCCGAAGACGGTAACATCGCCTCGTTGA
AAACGTTGGGAAAACCGTAGCGTGTGGGTTTGGTATCCCCTTGATGGTGG
AGTACGTAGCCGAGCTGCTTTGAAATTCGGTCAAGGGGAGTGTGGTGTCT
TGCTGAAGAAACGGTGCGTGGGGCTGTCGCAACCTTCTTCGGGGTTCTCC
GGGAGAATGGCCTTGCCCTGAATAGTCCCAGTATCGGTTCCGATCACTCT
TTGCTAAGAACCCACGGCGATCTTCGCGCTGCATCCAGTGCTATGTAGCT
CTCCGTTTTCGAGTTTTGTAGAGATGCGGGGTTCTGCGAAATGCATGGTG
TCGAGTAACCCCCCCCCCTCTCTTTATCCCGGGAAAGCTCATTTGTCGCG
CGGTTGCGTCAGCGCAAGAGGACAAGCGCTTTGTATTCTCCAAGGCACAT
GAATGCATGAACGAACCAAGTACTTGCGAAAGTTCTTGCATCGTTATCAG
CCTTGGTACCTTTTACCTTCCACACGTGGGATAGACCAGATCCCCACAGA
TCGAGCTAGCTATTTGGAAGGGTATTGTTGTGATCGGTTGTCCCCTGTGA
TCGGTAGGAGACAAGTGATCGGGGTTCCACGGTGATCTGAAAGAAATGGG
TGATCGGGGTATTTGTGTCCGAGGCGATCTGAAGGACTTCGATGATGGGG
GTAGGTTTGCTCCATGGTGATCTGTAAGACATGGGTGGGCTACCTCATGA
TCTATTTTATGCATACATTGTATGTGTATTGTATTCACATCCCTTACCGT
TGACAAAACGGGCTTGGTTCAACTTCGACATGGGGTGGGTAAGGCGGGGG
ACACTATTTGGTATTTGCCATGAAAGCCAGGCTGTATTGACTGGACTCAC
TGATACTCCAGACCAATGTCTCGCTGATTATCGTCCCCTCCAGTACCCCG
TGATTGTTTGGACGCTATACGTATGTATAACATCAGATGCGTTCCTGTCT
GACCCCCCCCTCCCCTCCCCCCCTGCAGCAGTCGGGCCGCATGTACTACA
CCCCGTTTCTCGTTGTTGCCGTCGTCTGGTCACGCTCACTTAACTCGTAT
GTACGGCATTGTGACTTTTTTTGTTTTGTTTCCGGTGCCTCACTTTTTTC
TTGTTTCTTGTTTCTTGTTTCTTGGAGCAGTGACCGGTGCTGCTTTGGCC
GACATGCTGTCGGGCATCGGTATCAGCGACAACGCCTCAGGTGTGTAGGC
AACTTGCTGGCGGGAGGTTGATTTAGGTGTACACATCCCGTCGCCGTGGC
TATATCCCTACTGCTGCTGCTGCTGCTGCTGCGCGAGTTACCTCCCTCCC
TTGTGGACCCCTTTCCCTTGTCGGACCCTTCCCTTTTCTCCCCTTAAGGT
CGAAGCCATGAGCCCATGTTAACCCTACGCTGCTGCGCGAGTTGCTTACC
TCCCGTACAATACCCTTTGTGCATCTCGACGTGAGACCCTTTCTCGCGTC
AAGGTGGAAGCCACGAGAGCTCCTGCGAGGAAGGTCTTTGCGAGAGAAGG
TTGAGAGACGTCCAACCCTTTGCGTTGTGACTGGTGCCAGCGCTTTCCCC
GGGAAGGGGGGACGAAAGAAACAAGGCGAAACAAGCCATCCTCTCTCCTT
CCCTTCCTGTCGTGTTGTCCTTTACTTTTGACAACAGGGAACGCGGCGGC
TGCCCGGGGTGGCGGGGGGCAGGACGTGGACGAAGACGACGACGATGATG
ATGACGAGGACTATGTAGATGGGGTAAGAGGGGAGCTGTGTGTTGATGAG
AGGGAGTACCAGGATGGTGAAGGAGTGTTGAGAGGCTGGGTATCGTGATG
AGGCGTGTGTTGTGGACTCATTTTGCGAGGGAGAGGCAAGGGGCGAGGAG
AATGGAGCGTCGAAGAAAGAGCGAGACAAGATTACGTAAACATGCGGGGT
AGATTGAGCGATGGTTATGTGGGGAAAATGTCTACAGAAGAGCGAAGAAT
ATGAAGAACTGTAAGTGAGCACGGGGGTGAGGTATCGTCAGACGCATGGT
AGGTGTAGGCATTCTCCACCCAAAGCCGAAGAAGTGGACTTAATCCGTCT
CCCCCACCACACACCGCGCACGCTTTGATGTGACTGACTGTGTGCAGGAG
GAGAACGAGGTAGAGCTACCGCCAGAAGTGATGAAGAGGCTGTACGAGCT
TAAGGCCCTCCAGTCAGAGAAGGACGTGGTGAGTGCTGGACACCATTCTT
TCACTGCTGCTGCTGCGGCTGCTGCCGCCGCGCCTGTCTTTGTAGCGTGG
GTGCGCGGCCGAGAACCCATGGACTACAAACCAAGCGACAAAATATGAGT
GCACCATTGCTTCTGGTGTGTCCATCCTCATGAAGCGTAGCCTGGGCCGG
CGAGAACCCGGCATATCGCTCGGTCCCGACTTTGTAGGGATGCGAGGTCT
ATGGTCTATAACGACTACGGCATGCATTTACATGAGTACTCCCCCACACA
CACACCCTTTCGCGTGGTCAATGGTCTAACCGCTAAGGCATGCATGCAAA
ACATGAGAGTACGCTCTCCCCCCACCCCCGTACCAACCGCCTTCCCAAGA
TTTACGAAAAGTACAAGGCGAAGCGCGCTGAGTTGGAGCTGGAATTTGCC
AAGGAGTACGGGGCGATCTACAGCCGCCGGGCGGAGGTGGTGGCGGGAAA
GTCGAGGGATATAGACGGTACGGCGAGGGAGGAAAGGGGGGAAGAGGACA
CACGCGTGAATGTCTGGAAGGCGGATAAACGAAAAGAGGACCACGATCTT
AGCAAGAGTGGCTCATGCGAGAATTGAAAAACATGAGGATCACGAATCAA
TCCGGACGATTATTTCGCTCCTGGCAGCGCGGGGGTGGGGGCGGGGGGGG
GGTTACAAGTTCTTGCGACGTGTAGCGGTGTGCACTTAGGACAGCACGGA
GTGGCAAAGGGACTTGTAGCGCGAGGGGGGGGGGCGTACACGCGGAACAA
GTAAGAATGAAGAGCGTTACATTCGAATGTGAACCTTTGTCCCCCGTCCC
TTGTCCGCGTAGGCTGCGTTGCGCTGCCTTCCACCATATACATATAACTC
CCCCCCCTCCCACCCGGTACAACCATTTAAGTGTCAACAATGACAGCAAC
AACAATAACGACGGCAACCATTGCCAACACTAACATGACCAACAACAATG
ACAGCGATTAGCAACACCATCACCACCACTATCAACAACACCGCCACCAC
CAATAACAACAGACAATCAACGACAACACTAACACCCAACACCACCAACA
ACAACACCAACGACAGATCCGGAGCCCGAGCTTGGCGCGCAGGGGGAGGG
AGGGACAGGCGGCGAAGCAGCGGGGGGTGAGGTTGGCGTGCCGCACTTCT
GGATGCAGTGCATGCTTCACCACGAGGCCCTGCACGATGTCGTTTGGTGA
GACGCCATTAAAAAGTGTTTTATGACCGGCTTGGAACACCGTGTGGTACA
CCTTGTTTTATCGTTGTTGCTGGTGTTGTTGATGGTGATGCCGTGTCTGT
TGATGGTGATGCCGTGTTGTTGATGGTGATGCCGTGTCTGTTGATGGTGA
TGCCGTGTTGTTGATGGTGATGCCGTGTTGTTGATGGTGATGCCGTGTTG
TTGATGGTGATGCCGTGTTGTTGATGGTGATGCCGTGTTGTTGATGATTG
TGGTGTCTGTTGGGAATTCAAAGTGTTTATGGCTGGCTTGGACCGCTGTA
CGTGTTGATGATTGTGGTGTTTGTTGGGAATTCAGAGTTTTAATGGCCGG
CTTGGACCACCGTCTATGTTGATGATTGTGGTGTTTGTTGGGAAATCCAG
AGTGTTTGTGGCCGGCTTGGACCAGCGTCTATGTTGATGATTGCGGTGTT
TGTTGGGAAATCCAGAGTGTTTGTGGCCGGCTTGGACGAGCGCCGTGCAG
ATTGTGGCAACGGTATCGTTGTTGATGATAACGCTGCTTTCCATGTGGTG
TGCGTGGTCCCCGCGCAGCCTTCACTTTGTTGTTGCAGCCCCCCCGCCAC
CCCCCGGCGGCGTGCTTGTTACAACCGGCCGGCAAGCATGATCCGTGAAA
ACGGTCACACTGCTGTAAATTTACGGGTAAACACACGGGTTCGCGATCGA
TGGATTGTAAGGATCGATTAGGATCGATTGCTCCATGACCGATAGGGGGT
GCGAGTCAGTCACAGTCCCGACCTACACGTGCAAGTAAGAAGAAGAAGGT
CGGTCTTTGTATCTCGACGAGATCTTACAAGTACGGCCCCGTCCTGAAGC
GTCGGCAGTGCCTCTTGCTGATTGTGAAGGAGTCGAAGTGCTGTCACAGT
GGACCGATCGCAATTCTTGTGCGTTCGCCTGTGCTTTTTCGGCGTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCTTCTTGGTTCTTGGT
AGGGGTGGGAGGTCTGAGTCCGAAGTGGTTGCTTGTTAAAGGCGTTGGAA
ATTCATGGTTTACGAGTACCCAGTCAACTTCCCGATGAAAAAAAATGATC
AACGCAGAAACAACCACACGCATTATATCCTGTCTGCTGTTGCTTCTTGC
TGCTGCTGCTGCCGCTACTGCTGTCGCTTCTTCTTCTTCTGCTCCTGCTA
CTGCTGCTCCTGCTCCTGCTGCGGCGGCTGCTGCTGCTCTTTCGTGCAGC
GAGCCAGACCTGGAGGCGCTGTACTACCTGTCGGACGTGCGGTGCGTGGA
CAAGGACACTCTTCTCGGATTTACCCTCCACTTCCACTTCGACGACAACC
CGTACTTCACGAACGCCGTGCTCACCAAGCGATACGACACTGCCAACATC
ATGGACCAGGTTAGGTTAGGTTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9510:338..5761+

>mRNA_E_fasciculatus_S2_contig9510.17543.1 ID=mRNA_E_fasciculatus_S2_contig9510.17543.1|Name=mRNA_E_fasciculatus_S2_contig9510.17543.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=705bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9510:338..5761+ (Ectocarpus fasciculatus EfasUO2)
ATGGACGCAGGGGAGGTCCCCGTGGCAATGGGCTCTGCTGAAGGTGGAGA
CGAAGTGACCGGTGCTGCTTTGGCCGACATGCTGTCGGGCATCGGTATCA
GCGACAACGCCTCAGGGAACGCGGCGGCTGCCCGGGGTGGCGGGGGGCAG
GACGTGGACGAAGACGACGACGATGATGATGACGAGGACTATGTAGATGG
GGAGGAGAACGAGGTAGAGCTACCGCCAGAAGTGATGAAGAGGCTGTACG
AGCTTAAGGCCCTCCAGTCAGAGAAGGACGTGATTTACGAAAAGTACAAG
GCGAAGCGCGCTGAGTTGGAGCTGGAATTTGCCAAGGAGTACGGGGCGAT
CTACAGCCGCCGGGCGGAGGTGGTGGCGGGAAAGTCGAGGGATATAGACG
ATCCGGAGCCCGAGCTTGGCGCGCAGGGGGAGGGAGGGACAGGCGGCGAA
GCAGCGGGGGGTGAGGTTGGCGTGCCGCACTTCTGGATGCAGTGCATGCT
TCACCACGAGGCCCTGCACGATGTCGTTTGCGAGCCAGACCTGGAGGCGC
TGTACTACCTGTCGGACGTGCGGTGCGTGGACAAGGACACTCTTCTCGGA
TTTACCCTCCACTTCCACTTCGACGACAACCCGTACTTCACGAACGCCGT
GCTCACCAAGCGATACGACACTGCCAACATCATGGACCAGGTTAGGTTAG
GTTAG
back to top