mRNA_E_fasciculatus_S2_contig9496.17525.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9496.17525.1
Unique NamemRNA_E_fasciculatus_S2_contig9496.17525.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9496.17525.1 vs.
Match: DUF913 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U3_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 7.620e-139
Identity = 213/216 (98.61%), Postives = 214/216 (99.07%), Query Frame = 1 
Query:  196 GGPLADPSPSQKALLFSLLNALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMQPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSEEV 843
            GGPLADPSPSQKALLFS+LNALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESM PQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSS EV
Sbjct:  199 GGPLADPSPSQKALLFSVLNALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEV 414
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9496.17525.1 vs.
Match: DUF913 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD86_9PHAE)

HSP 1 Score: 361 bits (926), Expect = 3.640e-116
Identity = 207/242 (85.54%), Postives = 208/242 (85.95%), Query Frame = 1 
Query:  127 AKGGDAGADGVGXXTGDDASAAAGGPLADPSPSQKALLFSLLNALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPA---PPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMQPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSEEV 843
            A GGD   DGV     DDAS+AAGGPLADPSPSQKALLFSLLNALSITFQNQ      VGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTV YLLRSGIVDEYLKVLTATPA   PPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPA              SRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSS EV
Sbjct:  202 ATGGDP--DGVQGGAEDDASSAAGGPLADPSPSQKALLFSLLNALSITFQNQ------VGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVPYLLRSGIVDEYLKVLTATPATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPA--------------SRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEV 421
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9496.17525.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IYT2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.320e-36
Identity = 87/215 (40.47%), Postives = 120/215 (55.81%), Query Frame = 1 
Query:  223 SQKALLFSLLNALSITFQNQ------------TQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTA---------TPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMQPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDEL 804
            S++ LLFS++N L++ F  Q            T   Q  G+  L       A+ D+  N   +GGVL AL+ATL+SDV N DP   V Y+  SG+   +L +             P+ PPSSDL++ +PNVL AL LT DGA+ V+E++ FP+   +   PE   P+SR     M S+VG GLDE+MRHVP+LRP  I A+V  +K +V  G EL
Sbjct:  523 SRRVLLFSMVNCLTVVFHQQETAANSGSNASLTAASQSSGTAQLHRPEFADALRDIMENVGSYGGVLAALSATLLSDVMNADPQV-VRYVHSSGLAKSFLNMFLTGGGEEDSPTAPSVPPSSDLIMAIPNVLSALSLTEDGAAAVKESDPFPSLLAVFVRPEYAMPESRCLLNEMASIVGTGLDEIMRHVPSLRPLVIDAIVGVVKRVVKLGKEL 736
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9496.17525.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZD07_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.480e-34
Identity = 75/205 (36.59%), Postives = 125/205 (60.98%), Query Frame = 1 
Query:  223 SQKALLFSLLNALSITFQNQTQTHQQV---GSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVL----TATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMQPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRE 816
            SQ+ +LF ++  L++ F  ++ +       G+  + +  LT A++++  N D++GG L +L +TL+SDV N DP   V Y+  +G+   +LK+L    +  P PPP  +L++++P VL AL LT  GA +++E N FP   R+ H P+   P+SR     MTS+VG GLDE+MRHVP+L     KA+ +++ ++V  GD++  +E
Sbjct:  719 SQRVVLFGVVTCLTVVFHQESTSSSVATPSGTAEIQKPELTKALIEILDNVDLYGGHLASLISTLLSDVMNSDPHV-VKYVHENGLARSFLKMLDVGPSGVPIPPPVPELIMSIPTVLAALALTEAGAKKLEENNPFPGLLRLFHHPKYAMPRSRCLLNEMTSIVGTGLDEIMRHVPSLSKSICKAIANAMMDVVAFGDQVALKE 922
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9496.17525.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3K2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.660e-32
Identity = 73/182 (40.11%), Postives = 110/182 (60.44%), Query Frame = 1 
Query:  223 SQKALLFSLLNALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPAP-PPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMQPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALV 765
            S + +L++++N L++ F  Q  +    G + L    LTAA+ ++  N D +GG+L+AL +TL+SD+ N DP   V ++  SGI   +L +L    A  PPS++L + +PNVL AL LT +GA  V E N FP    + H  E   P+S+    +MT++VG+G+DELMRHVP  R    +ALV
Sbjct:  167 SNRVILYNIVNCLTVVFHQQEASSHPSGGNHLRTPALTAAMKELLNNIDSYGGLLIALVSTLLSDIMNADPQV-VHHVHDSGIAASFLAMLKGEKANVPPSAELFMAIPNVLAALSLTENGARIVCEHNPFPTLLTIFHDKEYAMPKSKCLLNDMTAIVGSGIDELMRHVPNSRLLATRALV 347
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9496.17525.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L793_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.280e-31
Identity = 77/209 (36.84%), Postives = 115/209 (55.02%), Query Frame = 1 
Query:  226 QKALLFSLLNALSITFQNQTQTHQQVGSDP-----LLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTAT-----------------PAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMQPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELV 786
            Q+ LLFS +N L++ F +Q        + P     L +  L + ++D+  N + +GGV+ AL ATL+SDV N DP + V Y+  SG+   +L ++                    P   PS +L++ VPNV+ ALCLT  GA  V EAN FP    +L +P+   P SR     M +++G+GLDE+MRH P LRP+ +KA+V  +K +V
Sbjct:  493 QRVLLFSAVNCLTVVFHSQDARAGANAAAPPGGALLRKPELMSVILDIMNNVESYGGVMAALVATLLSDVMNSDPQS-VHYVHSSGLAKSFLSLILGKENELKSVLGEDVEKWGEPIMEPSGELIMAVPNVVSALCLTEAGARVVAEANPFPTMLSVLCSPKYAMPNSRCLLSEMAAIIGSGLDEIMRHNPLLRPKIVKAVVQVMKRVV 700
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9496.17525.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IJR3_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.270e-22
Identity = 75/207 (36.23%), Postives = 117/207 (56.52%), Query Frame = 1 
Query:  217 SPSQKALLFSLLNALSITFQNQTQTHQQVGSDPLLE-AFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLT----ATPAP-----PPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMQPQSRYP--EGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDE 801
            S ++  LL ++L +LS++F +Q        S  + E + L   ++ +  N D+FG V+ A TA ++SDV N DPS+ V ++  +G+ D +LK LT    A   P     PPSS+LL  VP VL+ALCLT   A  V +         +   P+  + +S+    +GN  +VVGAG+ ELMRHVP+ +   I+A V +LK+++  G+E
Sbjct: 1160 SETKTVLLLAILASLSMSFHSQGVMSAGATSRAIREGSALNKVLLQLLSNVDIFGPVVFAQTAIVVSDVINNDPSS-VNHVHAAGLADAFLKTLTRWDIAELYPSRILLPPSSELLTAVPTVLNALCLTTAHAENVAKYEPLMHLLDVFALPQYTEDESKDYCFQGNTAAVVGAGIFELMRHVPSFQNAAIQAAVHALKKVIRFGEE 1365
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9496.17525.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=9 Tax=Phytophthora TaxID=4783 RepID=W2PYI0_PHYPN)

HSP 1 Score: 107 bits (267), Expect = 2.280e-22
Identity = 73/207 (35.27%), Postives = 119/207 (57.49%), Query Frame = 1 
Query:  217 SPSQKALLFSLLNALSITFQNQTQTHQQVGSDPLLE-AFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLT----ATPAP-----PPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMQPQSRYP--EGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDE 801
            S ++  LL ++L +LS++F +Q        S  + E + L   ++ +  N D+FG V+ A TA ++SD+ N DP++ V ++  +G+ DE+LK LT    A   P     PPSS+LL  VP VL+ALCLT   A +V +         +   P+  + +S+    +G+  +VVGAG+ ELMRHVP+ +   I+A V +LK+++  G+E
Sbjct:  573 SETKTVLLLAILASLSMSFHSQGVMSAGATSRAIREGSALNKVLLQLLSNVDIFGPVVFAQTAIVVSDIINNDPAS-VNHVHAAGLADEFLKTLTRWDIAELYPSRILLPPSSELLTAVPTVLNALCLTTTHAEKVAKYEPLMHLLDVFALPQYTEDESKDYCFQGDTAAVVGAGIFELMRHVPSFQNAAIQAAVHALKKVIRFGEE 778
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9496.17525.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKE2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.130e-22
Identity = 76/210 (36.19%), Postives = 115/210 (54.76%), Query Frame = 1 
Query:  226 QKALLFSLLNALSITFQNQTQTHQQVGSDPLLE-AFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVL------TATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQ---------EANVFPAFFRMLHTPESMQPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELL 807
            ++ L  +LLN LS++F +Q        S  + + A L+  +  +  N D++G +L A  ATL+SD+ N DP T+V ++  SG+ D +LK L      T+  A PPS +L++ VP+VL ALCLT     +V          +  V PA+  + H  +S+Q       G++ S+VG GLDELMRHVPA +   I A V +L ++    DE L
Sbjct:  551 KQILAITLLNMLSVSFHSQGVMSAGATSRAIRDGAPLSKVLHAILTNIDVYGPMLFAQAATLVSDIINNDP-TSVNHVHASGLADAFLKTLCRWDLITSANALPPSPELVIAVPSVLSALCLTSTHVEKVVGYEPLAYLLDMFVMPAYV-LYHGYDSLQ-------GDVASIVGGGLDELMRHVPAFQKPAIDACVRALHKIQTYADEQL 751
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9496.17525.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SI64_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.660e-22
Identity = 74/207 (35.75%), Postives = 118/207 (57.00%), Query Frame = 1 
Query:  217 SPSQKALLFSLLNALSITFQNQTQTHQQVGSDPLLE-AFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLT----ATPAP-----PPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMQPQSRYP--EGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDE 801
            S ++  LL ++L +LS++F +Q        S  + E + L   ++ +  N D+FG V+ A TA ++SDV N DPS+ V ++  +G+ D +LK LT    A   P     PPSS+LL  VP VL+ALCLT   A +V +         +   P+  + +S+    +G+  +VVGAG+ ELMRHVP+ +   I+A V +LK+++  G+E
Sbjct:  574 SETKTVLLLAILASLSMSFHSQGVMSAGATSRAIREGSALNKVLLQLLSNVDIFGPVVFAQTAIVVSDVINNDPSS-VNHVHAAGLADAFLKTLTRWDIAELYPSRILLPPSSELLTAVPTVLNALCLTTAHAEKVAKYEPLMHLLDVFALPQYTEDESKDYCFQGDTAAVVGAGIFELMRHVPSFQNAAIQAAVHALKKVIRFGEE 779
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9496.17525.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DUF9137.620e-13998.61domain-containing protein n=1 Tax=Ectocarpus silic... [more]
DUF9133.640e-11685.54domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical6.320e-3640.47protein (Fragment) n=1 Tax=Odontella aurita TaxID=... [more]
HECT-type1.480e-3436.59E3 ubiquitin transferase n=1 Tax=Pseudo-nitzschia ... [more]
Hypothetical3.660e-3240.11protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
Hypothetical5.280e-3136.84protein (Fragment) n=1 Tax=Skeletonema marinoi Tax... [more]
HECT-type2.270e-2236.23E3 ubiquitin transferase n=1 Tax=Phytophthora alea... [more]
HECT-type2.280e-2235.27E3 ubiquitin transferase n=9 Tax=Phytophthora TaxI... [more]
HECT-type4.130e-2236.19E3 ubiquitin transferase n=1 Tax=Achlya hypogyna T... [more]
HECT-type5.660e-2235.75E3 ubiquitin transferase n=1 Tax=Phytophthora cact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9496contigE_fasciculatus_S2_contig9496:142..5839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score416.8
Seed ortholog evalue8.2e-114
Seed eggNOG ortholog2880.D7G2U3
Model size849
KEGG koko:K10592,ko:K14772,ko:K17964,ko:K22370
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-16_001510.1
EC2.3.2.26
Cds size849
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03029,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842597.7007616-CDS-E_fasciculatus_S2_contig9496:141..2101696842597.7007616-CDS-E_fasciculatus_S2_contig9496:141..210Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9496 142..210 -
1696842597.7190387-CDS-E_fasciculatus_S2_contig9496:1018..11801696842597.7190387-CDS-E_fasciculatus_S2_contig9496:1018..1180Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9496 1019..1180 -
1696842597.7400587-CDS-E_fasciculatus_S2_contig9496:2095..22521696842597.7400587-CDS-E_fasciculatus_S2_contig9496:2095..2252Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9496 2096..2252 -
1696842597.756788-CDS-E_fasciculatus_S2_contig9496:4464..46431696842597.756788-CDS-E_fasciculatus_S2_contig9496:4464..4643Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9496 4465..4643 -
1696842597.7770336-CDS-E_fasciculatus_S2_contig9496:5557..58391696842597.7770336-CDS-E_fasciculatus_S2_contig9496:5557..5839Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9496 5558..5839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9496.17525.1prot_E_fasciculatus_S2_contig9496.17525.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9496 142..5839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9496.17525.1

>prot_E_fasciculatus_S2_contig9496.17525.1 ID=prot_E_fasciculatus_S2_contig9496.17525.1|Name=mRNA_E_fasciculatus_S2_contig9496.17525.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=283bp
QGKGKGKKPSSSSSKSGKGKGKGRDKDGKAKGTTSSSSSAVLAKGGDAGA
DGVGGGTGDDASAAAGGPLADPSPSQKALLFSLLNALSITFQNQTQTHQQ
VGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVA
YLLRSGIVDEYLKVLTATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQE
ANVFPAFFRMLHTPESMQPQSRYPEGNMTSVVGAGLDELMRHVPALRPQC
IKALVSSLKELVGKGDELLKRELAGDSSEEVK*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9496:142..5839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9496.17525.1 ID=mRNA_E_fasciculatus_S2_contig9496.17525.1|Name=mRNA_E_fasciculatus_S2_contig9496.17525.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5698bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9496:142..5839- (Ectocarpus fasciculatus EfasUO2)
CAGGGCAAAGGCAAGGGCAAGAAGCCGTCCTCCTCCTCCTCCAAGAGCGG
TAAAGGGAAGGGCAAGGGTAGAGATAAGGACGGCAAGGCAAAGGGAACCA
CCTCTTCCTCCTCCTCGGCTGTTCTCGCCAAGGGAGGCGATGCCGGTGCC
GACGGTGTCGGGGGGGGGACAGGGGACGATGCGAGCGCGGCGGCGGGTGG
CCCCCTGGCGGACCCGTCTCCGTCGCAGAAGGCGCTCCTCTTCTCGCTGC
TGAACGCCCTCAGCATCACGTTTCAGAACCAGGTGCGCAAGCAAGGCGCG
AGAGAGCGACGTGGAGGGAAGGTTAACGTTTCAAGGCTTTTCCAAGAGAA
AGCTTGTTGACCGAAACGTTTTAGCGGCCGAAAGCTTGTTAGCCGAAAGT
CTTTTTTGTGTTCCGCCGAAAGCTTGTCATTATTGCCGAAAGCTTTAAGT
AGCCTAAAGGTTGGCAAGAGCTTGTTTCACCGAAATGTTTTGGCAGCCGA
AAACTTGCTAGCCGAGACCTTAATTCGCCGGAAGCTTGTTATTATTGCCG
AAAGCTTAGGTAGCCAAAAGGTTGGTAGCCAATAACTCTAGTAGCCGAAA
GCCAAGTAACGAAAATCTTGGCCAGCCACAAGCGTTTGCTTCAGCCAAAA
GCCAAGAGGTTTTTGGGTATCGGTTGTGCAACCTTGGGCGTCGAAATGTG
AAAGGAGTATGTTTTATGTTGATGATGGTCGTTTTTCAATTGTACCTGAC
CTGCTTCCGCCGTGCGTGTGTGCGTTACCCCTCTACCGACCCCCGCCCTC
CTCGGCGGTAACCTAGGTACTTGGGTAGCTGTGATTCGTTATATGCATGT
CGTTCAAAAACCCATAAAACAAATAGTCAAATATAAACACACCCTATGTA
TTTTAGCTTTGATAAAATATTTATGCTTGTTTGCATAGGTCGCGAGGTCT
GCAATCGAGAGACTAAACATCCGCAGGCGTGAATATTAGCAATACAGTAC
ATAGTACCCCCCTCCTTTTCTACGTGTACGGGTTCTGCCTCAGGCATGGA
AAATTGTCAACATGGACATTTTGTGTATCCCCCGCCCCCGTTTCCTTTTG
AAATTTTTTCCCCACACTTCCTTTTATTTTTTTTGCGCAGACCCAAACAC
AGAATTTCCCCACACCTCGATGTTGTTTTTGTTTCTGTTTGCGCAGACCC
AAACACACCAGCAGGTGGGGTCAGACCCCCTGCTGGAGGCGTTCTTGACG
GCGGCGGTGATGGACGTTTTCCGCAACAGCGACATGTTCGGGGGCGTGCT
GGTGGCGCTGACGGCGACCCTCATCTCGGACGTGGCGAACCAAGACCCCA
GCACCACGGTGGCCTACCTGCTCAGGTACTGTATGTCTTGTTCACGTTGT
TGTCGTGGTGGTGGTGGCGGCGATGGTGCTGTTTGTGTTGCTGTTGTTGT
TGCTGTTGTTGTCGTGGTGGTGGTAGTGGTGGTGTTGTCTTTGTCGTTTG
GTGCAGTTTCGTTATCGGTTTCCGTGTTGCTGTTCTTGTCGTGGTATTGG
ATGCAGCAGTGTTGCTGTTGTTGTCCTTGTAGTGTTGTTATCGTGCCCGC
CTTGATTTGCGCGGCTGCGACCTTTCGTTTCCTTCCCCCACCCTGTAAAA
TCCACTGTTTTTTTTTTCTACTTTTTCTTAATGCAACACAACACATCCAT
CTATCTCTCTCAGGCCTGTGCTCGGTAGGCGATAGCCTTGATTTTTTGCC
GTCGATTTGGGTCCTTACACTGAAAAGAGTGGAAGTTAGTGTATCAAAAT
CGCGAGAATATTCACCTACCGAGTACAAGCCTACTCTCTCCCTCTCCCCA
GATCAGGGCCCAGAATATAGTTGCAACGAATTCATAACATTATCGTAGTA
CCGGCGTTTCTGCGATTCGATTCCCCGAGCAGCAAGGTGGTCTCTCTTCA
AATTAGTACGACCAGCAACCTTTCACCTCAATCACACAGGGATTTTTATT
GTTTTGTTTTGTTTTTCCTCTTACGGCTGATTCTTATACGGCCGGATTCC
TATCCCAAGAAGCATAAAGATCCAGGATCGGCAAAAATCCGGCTGGAAGA
AAGTCCGGCTTTCTCGTACTGAGCGGATTTGTCACGCGGTTCTTGGGGGG
TGGGTGTAGATCGAACCCAGTCCACATAATCATCGAGTGCGACCTGAGTT
CTTTCACGTACCGCTCCCATTAAGAGCTTGGAGCAACCCTGCGCTGAAGG
GTCTGCTATTCTGCGCGCTGGTTGTTGATGGTCGCTTGGCACACGTGCGT
AAAAAAACATTTCTCCTCACACCAAACACGAAGACGCCCAAACGAGCCAA
AAGGCCGCCAGACAGCAAAAAGGGCCGCGTTTTGTCAGAGAGACGGGAGG
ACACCGCTACTGATTTCTCGCTCCCTAGGCCACGGATCGAAGCCAGACCG
GCCAGGATGTGTTCTGTGTTCCTTGCTCTCTGTCCGGAGTAGGTTTGCTC
AGCAGCTCGTCCTTTCAATCATTCGAAATCGTCGTCCGCGTGTGCACAAG
CTGTGTGTTGAAAATTGTGTTCAGGCCTTCAACACATCACTCTAATCTCG
AGAGAAGCAGAAGAGGCAAAAATCACAGTGCGAAAAAGCAACGACACCAC
ACGCATGCTTCTCTCCGTGGATAGAGAGCGGTACGTCAAAGAACTCAGGT
CGCACTCGCCGATTCGTGGACTGGGTGCACCAGGGGTAAACTCTTTGGGT
CAGAAAATCGGGTTGGGCGCCGAACTGGATTCTGTCCAACTTTCTGGGTG
AACGCAACCCGGATTCCCCATCCTGGATTTTGTTGACCCGAAAAACTGAC
GATCCGGCTCTTTAAGAAACCGGATTTTTGCCGATCCTGGATTTTGATGC
TTTTTGGGATAGGAATCCGGCTGAAGAATCAGCCTAATTATATCACAAGG
AATCCATCTATATCAACAGATAAGGGTTCAAAGTAGGATGGACTTGGCAA
TGATCGCTTAGCCTTTTAACCGGAGCACTACCTGTGTTTCTACGGTTGAT
TCCCCAAGCAAAAATTGTTTTTTTCATGTGGTGTCCCTTCTAATTAGTGC
AAACGACCGAGACCAACCTTGCACCTCAATCGCACAGTTTTTATTTTATT
TTATCGACGTCGGGGTCCAGAATGTAGCATTGAATGAAGCTAAGCTATCC
TGGACCCCTGACGTAAATGAAATAAAAAACCTGTGCGATTGAGGTACAAT
GTTGGCTTGGTCGTCTGCACTACTGTAATTAGAATCGAGGCCACGTGAAA
ATGTACTGTAATTAGAATAGAGGTCACGTGAAAATGAAAAAATGTTGCTG
GGGGAATCGTCAAACAAGAGTCTGTTACGATTTCTCCAAGCATTTGTTTT
TTTTCTACGCGGTGTCTCATTAATTATATCACAATGAATCCATCTACATC
AACAGATGAGGGTTCAAAGTAGGATGAATTAGCAATGAAGCCTTCGCCTT
TACCTGTGTCGTCAACAGTCTGTTCCGATTCTCCAAGTTTTTTTTTTCTT
TCTTTTTTTTTACGTGGTTTCTCGTCGTCGTGCGCAGGTCGGGCATCGTG
GACGAGTACCTCAAGGTTCTGACGGCCACTCCGGCGCCGCCGCCGTCGTC
GGACCTCTTGGTCACCGTGCCGAACGTGCTTCACGCGCTCTGCCTCACCC
ACGACGGCGCTTCGAGGGTGCAGGAGGCGAATGTCTTCCCGGCGGTAAGG
GTGCTACCGTAGGTGACATGACATGACACAAGATACCACACCTCCTGGAC
CGATTTTCCAAGCTATTTTATCGATTACTCCACGACGAAGAGGATGTATA
ACTCCACGACGAAGAGGATGTATAACTCCACGACGAAGAGGATGCATAAC
TCCACGACGAAGAGGATGTATAACTCCACAACGAAGAGGATGTATAACTC
CACGACGAAGAGGATGTATAACTCCACGGCGAAGAGGATGCATACAATGA
AACGATACATTTTCGGAAAGACACCGACCACGCTGCTCCAACGCCGCCGT
TTTTGGCGCTGCTAGAGTTATTCTGTTGCGGAGAAATGAAGCTTTGAATC
CAGCTTCAGGGGGGGTGGTATCTTGTGTCATGTCATGTCACCTACGGTAG
TTGCTGCTTGCTCTCTCTGTTGTTGGAGGAGGTGGTGTCGGTTCGGTGTT
GTCGCTGCTCTTGCCGTGGCGGTAAGATCACTGGCCACGCCACGCGTCCT
CGAAAATGATGGAGCGTTGTTGTTCCCACAGGACCGATGGACAATCGTTC
CTTCCTACTTTTGCCGAGGGTGGCTCAAAAAAGCTTTTTCCCTAGCCACT
ATCGGTATCACTTCCCGCCTTTTCAACCCGCGTGCGGGGAGGGGTGGCAC
GTATTAGGTCGCTGCTCTCTAGTTGTTGTTGTTGGTGTTGGTGGTGGTGG
TGGTGGTGGTGGTGGTGGTGGTGCTTTTCCGGTTGTTCTGGCCGTGTGTT
TGTGTGTTTATCTGTATTTGTCAACTTCTGTACGGCAAGTGTTCAGGAGT
TTTCCATGTGCTGTACGATCTGAAAGGCCCTCTATCTGCCCACCTGCCCC
CACCCACCCGCCCGGATGTTTGTTCTCTGTCGATCGTCGGTGCCGTTCGT
TTCCTCCAGTTTTTCCGCATGCTGCACACCCCCGAGTCCATGCAACCGCA
GTCGCGGTACCCCGAAGGAAACATGACGTCCGTGGTCGGGGCTGGCCTCG
ACGAGCTCATGCGCCACGTGCCGGCGCTTCGGCCCCAGTGCATAAAGGCC
CTCGTCTCGTCTTTGAAAGAGGTGAGTTGTGGCAAAAGCACAAAATACGC
GCTTGAGCATTACCATATCCCAGCCTACTACCCCCGTCCTCGGTGAAATT
GATGAGGAACTCTACGGGATGGTGGCCACTTTTATACCCCATCTTTGTTT
TGTTTTCTCCTTAGAAATAGCGACCCCGAGAAATAAGTCTTCCGCCCAGT
TTTTTAGGCCTCGACTCGCCGTGTGCACGAAGGTGCCGAGGTCGGCGTCC
TAAGAGAGGTTCCGGGTAGGGGATGCGCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCTCGGCCGGCACCACCCCCCCCCCCCCCCCGCCNNNNNNNNNN
CCCCTTCCTTCCCCCCCGTTTTTTTGGCCCCCCCCCCCCGTGGGCACGAA
GGGGCGCGGGGCGGGCCCCTAAAAGGGGTTCCGGGGGGGGGGGGCCCCCC
CCCCCCCCCCCCCTCTCCGGTGTGATGCGACTCGCCGAACACCTACCTCA
CGGCGCTTCACTCCGCGCTTGCTGCTGTTTCCTGTGCGGTTAGGCTTGTA
CTCGGTAGGCGGTTCTTCCACTCCATTTTCAGTATGTGAACCCAAATCGA
CAGCAAAAAATCAAGGCAATCGCCGACCGAGTATTGTATGAGTCTACCTT
TTTTTGGTAGAGATGCGAGGCGTGCGGTCGAAGCACAACGGTATATACCC
ACGCAAGTCATGAACGCGCCTCCTTCCCACAACGCCCTCCCGCCTCTTCC
TTTTTTTCTCTTCTCCGTGAATGTGTAAATTGTTACGCCGCTCCGTCATT
GTTATTGTTACGCCGTTCGCTCCCTACAGCTTGTCGGGAAGGGGGACGAG
CTGCTGAAGAGAGAGCTCGCCGGTGATTCCTCGGAGGAGGTAAAGTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9496:142..5839-

>mRNA_E_fasciculatus_S2_contig9496.17525.1 ID=mRNA_E_fasciculatus_S2_contig9496.17525.1|Name=mRNA_E_fasciculatus_S2_contig9496.17525.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=849bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9496:142..5839- (Ectocarpus fasciculatus EfasUO2)
CAGGGCAAAGGCAAGGGCAAGAAGCCGTCCTCCTCCTCCTCCAAGAGCGG
TAAAGGGAAGGGCAAGGGTAGAGATAAGGACGGCAAGGCAAAGGGAACCA
CCTCTTCCTCCTCCTCGGCTGTTCTCGCCAAGGGAGGCGATGCCGGTGCC
GACGGTGTCGGGGGGGGGACAGGGGACGATGCGAGCGCGGCGGCGGGTGG
CCCCCTGGCGGACCCGTCTCCGTCGCAGAAGGCGCTCCTCTTCTCGCTGC
TGAACGCCCTCAGCATCACGTTTCAGAACCAGACCCAAACACACCAGCAG
GTGGGGTCAGACCCCCTGCTGGAGGCGTTCTTGACGGCGGCGGTGATGGA
CGTTTTCCGCAACAGCGACATGTTCGGGGGCGTGCTGGTGGCGCTGACGG
CGACCCTCATCTCGGACGTGGCGAACCAAGACCCCAGCACCACGGTGGCC
TACCTGCTCAGGTCGGGCATCGTGGACGAGTACCTCAAGGTTCTGACGGC
CACTCCGGCGCCGCCGCCGTCGTCGGACCTCTTGGTCACCGTGCCGAACG
TGCTTCACGCGCTCTGCCTCACCCACGACGGCGCTTCGAGGGTGCAGGAG
GCGAATGTCTTCCCGGCGTTTTTCCGCATGCTGCACACCCCCGAGTCCAT
GCAACCGCAGTCGCGGTACCCCGAAGGAAACATGACGTCCGTGGTCGGGG
CTGGCCTCGACGAGCTCATGCGCCACGTGCCGGCGCTTCGGCCCCAGTGC
ATAAAGGCCCTCGTCTCGTCTTTGAAAGAGCTTGTCGGGAAGGGGGACGA
GCTGCTGAAGAGAGAGCTCGCCGGTGATTCCTCGGAGGAGGTAAAGTGA
back to top