mRNA_E_fasciculatus_S2_contig9487.17519.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE) HSP 1 Score: 320 bits (820), Expect = 5.230e-103 Identity = 284/396 (71.72%), Postives = 299/396 (75.51%), Query Frame = 1
Query: 1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEXGGSSKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGNEKAEFCTKHANDEILAAGMFGEFGTSPGGVANAAXXXXXXXXXXXXXXXXXXXXPIAPYELGMGRMVPPGLSAGMAA-----NKRTAVLPAAMSVPXXXXXXXXXXXXXXXXXXXXQLNDMRYVKSESLEFRPPSAPSNDRYLGVAAESLAHFRSSPSERYLMEGINNSSSQQQL-------LQFHQQQPAQQPIMH--GRYSNHNLGGMGGGEMQQFRPQQLNPTDRYGAAGLMPVGGADSSAYSEEIAAVFEREMPL 1146
MSQCGH NCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GE SKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXX G+GNEKAEFC KHAND+IL+AG+FGE+G + XXXXX PIAPYELGMGRMVPPGLSAGMAA NKRTAVLPAA + Q ND RYVK+ESLEFRP SAPSNDR+LG AAESLAHFRSSPSER LMEG+N+SS QQ L F QP QQPI H GRY N NL G GGGEMQQF PQQL+P DRYGAAGLMPV A+S AYSEE+AAVF+REM L
Sbjct: 61 MSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGEVSRGSKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXSYISGQGNEKAEFCGKHANDQILSAGIFGEYGDA-----------GAXXXXXEAGAKRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPAAAASVPPPFMMTPRPAFSGAPQQQQQPNDTRYVKNESLEFRPLSAPSNDRHLG-AAESLAHFRSSPSERCLMEGVNSSSQQQXXXXXXXXXLHF---QPHQQPIQHPHGRYIN-NLRG-GGGEMQQFWPQQLSPNDRYGAAGLMPVR-AESVAYSEEVAAVFDREMSL 438
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI) HSP 1 Score: 261 bits (667), Expect = 3.030e-81 Identity = 287/390 (73.59%), Postives = 296/390 (75.90%), Query Frame = 1
Query: 1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEXGGSSKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGNEKAEFCTKHANDEILAAGMFGEFGTSPGGVANAAXXXXXXXXXXXXXXXXXXXXPIAPYELGMGRMVPPGLSAGMAA-----NKRTAVLPAAMSVPXXXXXXXXXXXXXXXXXXXXQL---NDMRYVKSESLEFRPPSAPSNDRYLGVAAESLAHFRSSPSERYLMEGINNSSSQQQLLQFHQQQPAQQPIMHGRYSNHNLGGMGGGEMQQFRPQQLNPTDRYGAAGLMPVGGADSSAYSEEIAAVFEREMPL 1146
MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX X SKIPGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXX NDEILAAGMFGE+G + G A XXXXXXX PIAPYELGMGRMVPPGLSAGMAA NKRTAVLP A XXXXXXXXXXXXXXXXXXXX ND RYVK+ESLEFRP SAPSNDRYLG AAESLAHFR+SPSERY+ +NLGG GGGEMQQFRPQQL+P DRYGAAGLMPVG A+SSAYSEEIAAVF+REMPL
Sbjct: 1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XSKIPGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDEILAAGMFGEYGDA--GATPAXXXXXXXXKRKQPP-------PIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNDTRYVKNESLEFRPLSAPSNDRYLG-AAESLAHFRASPSERYM---------------------------------NNLGG-GGGEMQQFRPQQLSPNDRYGAAGLMPVG-AESSAYSEEIAAVFDREMPL 344
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW71_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 5.320e-7 Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 120
M CGHA C K+P YGVAG+KKREFCS H + GMV+V N+
Sbjct: 1 MPACGHAGCPKQPKYGVAGTKKREFCSGHRKAGMVDVVNR 40
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI) HSP 1 Score: 58.9 bits (141), Expect = 2.150e-6 Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1
Query: 10 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
C CT RP+YG+ GSKK EFCS+H++ GM NV KRC
Sbjct: 31 CQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRC 69
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU8_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 2.630e-6 Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query: 7 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
+C H C+KRPTYGV S+KRE CSQHAR MVN++ RC
Sbjct: 55 KCLHPGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRC 94
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 4.340e-6 Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1
Query: 10 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
C CTK P+YG AGSKK EFC+QHA+ GMVN+ ++RC
Sbjct: 109 CKEHGCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRC 147
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 1.240e-5 Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1
Query: 10 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
C CT RP+YG+ G KK EFCS+H++ GM+N+ KRC
Sbjct: 27 CQEHGCTVRPSYGIDGCKKAEFCSKHSKPGMINLTKKRC 65
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP4_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 1.290e-5 Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 7 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
+C ++ C+KRPTYGV S+KRE CSQHAR MVN++ RC
Sbjct: 6 KCLYSGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRC 45
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2_ECTSI) HSP 1 Score: 56.2 bits (134), Expect = 2.250e-5 Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1
Query: 7 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 123
+CGH C K +YGV G+K+REFC +HA+ GMV+V +KR
Sbjct: 5 RCGHPGCGKHSSYGVKGTKEREFCGRHAKMGMVDVRSKR 43
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 2.520e-5 Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1
Query: 10 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
C C+ RP+YG SKK EFCSQHA+ GMVNV +KRC
Sbjct: 248 CEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRC 286 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9487.17519.1 >prot_E_fasciculatus_S2_contig9487.17519.1 ID=prot_E_fasciculatus_S2_contig9487.17519.1|Name=mRNA_E_fasciculatus_S2_contig9487.17519.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=383bp MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQPNCTTIback to top mRNA from alignment at E_fasciculatus_S2_contig9487:3506..4654- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9487.17519.1 ID=mRNA_E_fasciculatus_S2_contig9487.17519.1|Name=mRNA_E_fasciculatus_S2_contig9487.17519.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1149bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9487:3506..4654- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9487:3506..4654- >mRNA_E_fasciculatus_S2_contig9487.17519.1 ID=mRNA_E_fasciculatus_S2_contig9487.17519.1|Name=mRNA_E_fasciculatus_S2_contig9487.17519.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1149bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9487:3506..4654- (Ectocarpus fasciculatus EfasUO2)back to top |