mRNA_E_fasciculatus_S2_contig9487.17519.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9487.17519.1
Unique NamemRNA_E_fasciculatus_S2_contig9487.17519.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 5.230e-103
Identity = 284/396 (71.72%), Postives = 299/396 (75.51%), Query Frame = 1
Query:    1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEXGGSSKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGNEKAEFCTKHANDEILAAGMFGEFGTSPGGVANAAXXXXXXXXXXXXXXXXXXXXPIAPYELGMGRMVPPGLSAGMAA-----NKRTAVLPAAMSVPXXXXXXXXXXXXXXXXXXXXQLNDMRYVKSESLEFRPPSAPSNDRYLGVAAESLAHFRSSPSERYLMEGINNSSSQQQL-------LQFHQQQPAQQPIMH--GRYSNHNLGGMGGGEMQQFRPQQLNPTDRYGAAGLMPVGGADSSAYSEEIAAVFEREMPL 1146
            MSQCGH NCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GE    SKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXX    G+GNEKAEFC KHAND+IL+AG+FGE+G +             XXXXX          PIAPYELGMGRMVPPGLSAGMAA     NKRTAVLPAA +                      Q ND RYVK+ESLEFRP SAPSNDR+LG AAESLAHFRSSPSER LMEG+N+SS QQ         L F   QP QQPI H  GRY N NL G GGGEMQQF PQQL+P DRYGAAGLMPV  A+S AYSEE+AAVF+REM L
Sbjct:   61 MSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGEVSRGSKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXSYISGQGNEKAEFCGKHANDQILSAGIFGEYGDA-----------GAXXXXXEAGAKRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPAAAASVPPPFMMTPRPAFSGAPQQQQQPNDTRYVKNESLEFRPLSAPSNDRHLG-AAESLAHFRSSPSERCLMEGVNSSSQQQXXXXXXXXXLHF---QPHQQPIQHPHGRYIN-NLRG-GGGEMQQFWPQQLSPNDRYGAAGLMPVR-AESVAYSEEVAAVFDREMSL 438          
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 3.030e-81
Identity = 287/390 (73.59%), Postives = 296/390 (75.90%), Query Frame = 1
Query:    1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEXGGSSKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGNEKAEFCTKHANDEILAAGMFGEFGTSPGGVANAAXXXXXXXXXXXXXXXXXXXXPIAPYELGMGRMVPPGLSAGMAA-----NKRTAVLPAAMSVPXXXXXXXXXXXXXXXXXXXXQL---NDMRYVKSESLEFRPPSAPSNDRYLGVAAESLAHFRSSPSERYLMEGINNSSSQQQLLQFHQQQPAQQPIMHGRYSNHNLGGMGGGEMQQFRPQQLNPTDRYGAAGLMPVGGADSSAYSEEIAAVFEREMPL 1146
            MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  X   SKIPGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXX              NDEILAAGMFGE+G +  G   A XXXXXXX             PIAPYELGMGRMVPPGLSAGMAA     NKRTAVLP A    XXXXXXXXXXXXXXXXXXXX     ND RYVK+ESLEFRP SAPSNDRYLG AAESLAHFR+SPSERY+                                 +NLGG GGGEMQQFRPQQL+P DRYGAAGLMPVG A+SSAYSEEIAAVF+REMPL
Sbjct:    1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XSKIPGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDEILAAGMFGEYGDA--GATPAXXXXXXXXKRKQPP-------PIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNDTRYVKNESLEFRPLSAPSNDRYLG-AAESLAHFRASPSERYM---------------------------------NNLGG-GGGEMQQFRPQQLSPNDRYGAAGLMPVG-AESSAYSEEIAAVFDREMPL 344          
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW71_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.320e-7
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 120
            M  CGHA C K+P YGVAG+KKREFCS H + GMV+V N+
Sbjct:    1 MPACGHAGCPKQPKYGVAGTKKREFCSGHRKAGMVDVVNR 40          
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.150e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1
Query:   10 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
            C    CT RP+YG+ GSKK EFCS+H++ GM NV  KRC
Sbjct:   31 CQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRC 69          
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU8_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.630e-6
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:    7 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
            +C H  C+KRPTYGV  S+KRE CSQHAR  MVN++  RC
Sbjct:   55 KCLHPGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRC 94          
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 4.340e-6
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   10 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
            C    CTK P+YG AGSKK EFC+QHA+ GMVN+ ++RC
Sbjct:  109 CKEHGCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRC 147          
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.240e-5
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1
Query:   10 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
            C    CT RP+YG+ G KK EFCS+H++ GM+N+  KRC
Sbjct:   27 CQEHGCTVRPSYGIDGCKKAEFCSKHSKPGMINLTKKRC 65          
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.290e-5
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    7 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
            +C ++ C+KRPTYGV  S+KRE CSQHAR  MVN++  RC
Sbjct:    6 KCLYSGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRC 45          
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.250e-5
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    7 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 123
            +CGH  C K  +YGV G+K+REFC +HA+ GMV+V +KR
Sbjct:    5 RCGHPGCGKHSSYGVKGTKEREFCGRHAKMGMVDVRSKR 43          
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.520e-5
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1
Query:   10 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 126
            C    C+ RP+YG   SKK EFCSQHA+ GMVNV +KRC
Sbjct:  248 CEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRC 286          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9487.17519.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
Uncharacterized5.230e-10371.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-73.030e-8173.59n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized5.320e-765.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-72.150e-658.97n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-72.630e-662.50n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-74.340e-661.54n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized1.240e-553.85protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.290e-560.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-72.250e-556.41n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2_ECTSI[more]
EsV-1-72.520e-561.54n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9487contigE_fasciculatus_S2_contig9487:3506..4654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score60.1
Seed ortholog evalue2.6e-06
Seed eggNOG ortholog2880.D7G985
Model size1149
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs29ZCP@1,2RXW0@2759
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-23_003640.1
Cds size1149
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842596.8063602-CDS-E_fasciculatus_S2_contig9487:3505..46541696842596.8063602-CDS-E_fasciculatus_S2_contig9487:3505..4654Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9487 3506..4654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9487.17519.1prot_E_fasciculatus_S2_contig9487.17519.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9487 3506..4654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9487.17519.1

>prot_E_fasciculatus_S2_contig9487.17519.1 ID=prot_E_fasciculatus_S2_contig9487.17519.1|Name=mRNA_E_fasciculatus_S2_contig9487.17519.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=383bp
MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQPNCTTI
PSFAAAGSKKAEFCSQHARDGMVDVRSRRCSQRGCNTQPSLGEAGGSSKI
PGACKAHAGEGMVGLRSKRCARRGCTLRPSYVSGRGNEKAEFCTKHANDE
ILAAGMFGEFGTSPGGVANAAAAAAAAAAAAAAGAKRKQPPPIAPYELGM
GRMVPPGLSAGMAANKRTAVLPAAMSVPPPAMMPPPPMFSAPQQQQQQQL
NDMRYVKSESLEFRPPSAPSNDRYLGVAAESLAHFRSSPSERYLMEGINN
SSSQQQLLQFHQQQPAQQPIMHGRYSNHNLGGMGGGEMQQFRPQQLNPTD
RYGAAGLMPVGGADSSAYSEEIAAVFEREMPL*
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mRNA from alignment at E_fasciculatus_S2_contig9487:3506..4654-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9487.17519.1 ID=mRNA_E_fasciculatus_S2_contig9487.17519.1|Name=mRNA_E_fasciculatus_S2_contig9487.17519.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1149bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9487:3506..4654- (Ectocarpus fasciculatus EfasUO2)
ATGAGCCAATGCGGCCACGCGAACTGCACCAAGCGGCCGACTTACGGCGT GGCCGGCTCCAAGAAGCGTGAATTCTGTTCGCAGCACGCGCGAGACGGGA TGGTGAACGTCAACAACAAGAGGTGCATCCAGCCCAACTGCACCACCATC CCGTCCTTCGCCGCGGCGGGGAGCAAGAAGGCCGAGTTTTGCTCGCAGCA CGCGCGAGACGGGATGGTGGACGTCCGCAGCAGGAGGTGCAGCCAGCGCG GATGCAACACCCAGCCCTCCCTGGGAGAGGCGGGCGGCAGCAGCAAGATC CCGGGCGCCTGCAAGGCCCACGCCGGCGAGGGCATGGTCGGCCTGCGCAG CAAGCGGTGCGCCCGCCGCGGCTGCACCCTGCGCCCGTCCTACGTCTCCG GCCGGGGCAACGAAAAAGCGGAGTTCTGCACCAAGCACGCGAACGACGAG ATCCTGGCTGCGGGCATGTTCGGGGAGTTCGGCACTAGTCCAGGTGGTGT TGCCAATGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCCG GGGCGAAGCGGAAGCAGCCGCCTCCCATCGCGCCGTACGAGCTGGGGATG GGCCGGATGGTGCCTCCCGGGCTGTCGGCGGGCATGGCGGCCAACAAGCG GACCGCGGTGCTGCCTGCAGCAATGTCGGTGCCACCGCCGGCGATGATGC CGCCTCCCCCTATGTTCTCCGCTCCCCAGCAGCAGCAGCAGCAGCAGCTG AACGATATGAGGTACGTCAAGAGCGAGAGCCTGGAGTTCCGGCCGCCGTC GGCCCCGTCGAACGACCGGTACCTCGGGGTAGCGGCCGAGAGCCTGGCGC ACTTCCGCTCGTCGCCCAGCGAGAGGTACCTGATGGAGGGAATCAACAAC AGCTCGTCGCAGCAACAGCTTCTTCAGTTCCACCAGCAGCAGCCAGCCCA ACAGCCCATCATGCACGGCAGGTACAGCAACCACAACTTGGGCGGGATGG GGGGCGGAGAGATGCAGCAGTTCCGGCCCCAGCAGCTGAACCCGACCGAC AGGTACGGGGCTGCGGGGCTGATGCCGGTGGGAGGAGCAGACAGCTCGGC GTATTCGGAGGAGATCGCCGCCGTCTTCGAAAGGGAGATGCCTCTCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9487:3506..4654-

>mRNA_E_fasciculatus_S2_contig9487.17519.1 ID=mRNA_E_fasciculatus_S2_contig9487.17519.1|Name=mRNA_E_fasciculatus_S2_contig9487.17519.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1149bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9487:3506..4654- (Ectocarpus fasciculatus EfasUO2)
ATGAGCCAATGCGGCCACGCGAACTGCACCAAGCGGCCGACTTACGGCGT
GGCCGGCTCCAAGAAGCGTGAATTCTGTTCGCAGCACGCGCGAGACGGGA
TGGTGAACGTCAACAACAAGAGGTGCATCCAGCCCAACTGCACCACCATC
CCGTCCTTCGCCGCGGCGGGGAGCAAGAAGGCCGAGTTTTGCTCGCAGCA
CGCGCGAGACGGGATGGTGGACGTCCGCAGCAGGAGGTGCAGCCAGCGCG
GATGCAACACCCAGCCCTCCCTGGGAGAGGCGGGCGGCAGCAGCAAGATC
CCGGGCGCCTGCAAGGCCCACGCCGGCGAGGGCATGGTCGGCCTGCGCAG
CAAGCGGTGCGCCCGCCGCGGCTGCACCCTGCGCCCGTCCTACGTCTCCG
GCCGGGGCAACGAAAAAGCGGAGTTCTGCACCAAGCACGCGAACGACGAG
ATCCTGGCTGCGGGCATGTTCGGGGAGTTCGGCACTAGTCCAGGTGGTGT
TGCCAATGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCCG
GGGCGAAGCGGAAGCAGCCGCCTCCCATCGCGCCGTACGAGCTGGGGATG
GGCCGGATGGTGCCTCCCGGGCTGTCGGCGGGCATGGCGGCCAACAAGCG
GACCGCGGTGCTGCCTGCAGCAATGTCGGTGCCACCGCCGGCGATGATGC
CGCCTCCCCCTATGTTCTCCGCTCCCCAGCAGCAGCAGCAGCAGCAGCTG
AACGATATGAGGTACGTCAAGAGCGAGAGCCTGGAGTTCCGGCCGCCGTC
GGCCCCGTCGAACGACCGGTACCTCGGGGTAGCGGCCGAGAGCCTGGCGC
ACTTCCGCTCGTCGCCCAGCGAGAGGTACCTGATGGAGGGAATCAACAAC
AGCTCGTCGCAGCAACAGCTTCTTCAGTTCCACCAGCAGCAGCCAGCCCA
ACAGCCCATCATGCACGGCAGGTACAGCAACCACAACTTGGGCGGGATGG
GGGGCGGAGAGATGCAGCAGTTCCGGCCCCAGCAGCTGAACCCGACCGAC
AGGTACGGGGCTGCGGGGCTGATGCCGGTGGGAGGAGCAGACAGCTCGGC
GTATTCGGAGGAGATCGCCGCCGTCTTCGAAAGGGAGATGCCTCTCTGA
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