mRNA_E_fasciculatus_S2_contig948.17511.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig948.17511.1
Unique NamemRNA_E_fasciculatus_S2_contig948.17511.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig948.17511.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM85_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 6.870e-91
Identity = 150/177 (84.75%), Postives = 161/177 (90.96%), Query Frame = 2 
Query:    2 PSTPEGAGATLRCDVAIGSALVYSPHHACVADVLSRAFAAGGCRAGYILQLSTRPGFDDFLRRLESCGLRYRLRRMSDILPGDLLKEIHRSASIDIVGGPVTSSRTPSCLEAARDRDGGGKEGCGGGVGVDGGESPSGSVVXXXXXXXXXGSCNLFDEFVMCEIFRATEEQQQRRMS 532
            PSTP+ AGATLRCDVAIGSALVYSPHHACVADVLSRAFAAGGCRAGYILQLSTRPGFDDFL RL SCGLRYRLRRMSDILPGDLL+EIH+SASIDIVGGPVTSSRTP C++AARD  GGG+E C GG GVD G+SPSGSV+  XXXXXX G+C  FDEFVMCEIFRATEEQQ+R+ S
Sbjct:  222 PSTPQDAGATLRCDVAIGSALVYSPHHACVADVLSRAFAAGGCRAGYILQLSTRPGFDDFLHRLGSCGLRYRLRRMSDILPGDLLEEIHQSASIDIVGGPVTSSRTPLCVDAARDSVGGGEEDCDGGKGVDAGKSPSGSVIAAXXXXXXAGTCTRFDEFVMCEIFRATEEQQRRQNS 398
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig948.17511.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW0_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 1.670e-88
Identity = 148/189 (78.31%), Postives = 152/189 (80.42%), Query Frame = 2 
Query:    2 PSTPEGAGATLRCDVAIGSALVYSPHHACVADVLSRAFAAGGCRAGYILQLSTR------------PGFDDFLRRLESCGLRYRLRRMSDILPGDLLKEIHRSASIDIVGGPVTSSRTPSCLEAARDRDGGGKEGCGGGVGVDGGESPSGSVVXXXXXXXXXGSCNLFDEFVMCEIFRATEEQQQRRMS 532
            PSTPE AGATLRCDVAIGSALVYSPHHACVADVLSRAFA+GGCRAGYILQLSTR            PGFDDFL RL SCGLRYRLRRMSDILPGDLL+EI RSASIDIVGGPV SSRTPSC+ AARD  GG KE CGGG GVDGGESPS SVV          +C  FDEFVMCEIFRATEEQQQRR S
Sbjct:  208 PSTPEDAGATLRCDVAIGSALVYSPHHACVADVLSRAFASGGCRAGYILQLSTRQARGPLCLVSLRPGFDDFLHRLGSCGLRYRLRRMSDILPGDLLEEIRRSASIDIVGGPVASSRTPSCVNAARDSVGGAKEDCGGGTGVDGGESPSRSVVAAATADAAASTCTRFDEFVMCEIFRATEEQQQRRNS 396
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig948.17511.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.870e-9184.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.670e-8878.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig948contigE_fasciculatus_S2_contig948:3214..4471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score144.1
Seed ortholog evalue3.8e-32
Seed eggNOG ortholog2880.D8LM85
Model size885
KEGG koko:K21806
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Lysine methyltransferase
EggNOG OGs2E8GN@1,2SEYU@2759
Cds size309
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842595.9569242-UTR-E_fasciculatus_S2_contig948:3213..33751696842595.9569242-UTR-E_fasciculatus_S2_contig948:3213..3375Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig948 3214..3375 +
1696842595.9701285-UTR-E_fasciculatus_S2_contig948:3748..38121696842595.9701285-UTR-E_fasciculatus_S2_contig948:3748..3812Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig948 3749..3812 +
1696842595.9999132-UTR-E_fasciculatus_S2_contig948:4121..44711696842595.9999132-UTR-E_fasciculatus_S2_contig948:4121..4471Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig948 4122..4471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842595.9877234-CDS-E_fasciculatus_S2_contig948:3812..41211696842595.9877234-CDS-E_fasciculatus_S2_contig948:3812..4121Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig948 3813..4121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig948.17511.1prot_E_fasciculatus_S2_contig948.17511.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig948 3813..4121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig948.17511.1

>prot_E_fasciculatus_S2_contig948.17511.1 ID=prot_E_fasciculatus_S2_contig948.17511.1|Name=mRNA_E_fasciculatus_S2_contig948.17511.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=103bp
MSDILPGDLLKEIHRSASIDIVGGPVTSSRTPSCLEAARDRDGGGKEGCG
GGVGVDGGESPSGSVVAAAAAAAAAGSCNLFDEFVMCEIFRATEEQQQRR
MS*
back to top

mRNA from alignment at E_fasciculatus_S2_contig948:3214..4471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig948.17511.1 ID=mRNA_E_fasciculatus_S2_contig948.17511.1|Name=mRNA_E_fasciculatus_S2_contig948.17511.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1258bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig948:3214..4471+ (Ectocarpus fasciculatus EfasUO2)
ACCATCAACACCGGAAGGCGCAGGCGCAACGCTTCGCTGCGACGTGGCCA
TCGGCTCCGCGCTGGTGTACAGCCCGCACCATGCGTGCGTCGCCGACGTT
CTGTCCCGAGCGTTCGCGGCGGGCGGGTGCCGCGCTGGGTACATCCTCCA
GCTCTCGACCAGGCAAGCGAGAGGCCCTCTGTGCTTAGCCTGCGGTAGGA
CAAGTCCTCAGCAGCAGCACCGACTAACCATCCCCACCGTCACGGTTGTA
CATGCGTGCATTCGTTTCGCTCTGTTCTCTGGATAGGTTACTGTTCGAGA
GAGCGTTTTGGAGTTTTTCGTGGAGAAGGGTTTTTGAGGTTGTGCGAGAG
GCGTTTTGGAGGTGGTTTTTGTGCGAGGCGTTTTGTTTTGTTTTGTTTGA
GAAGCGAGAATCGCGTTTTGTTCTTGGTGCCCACTCTCAACGACCGCGTC
CGTATCTCTCTCCTTCCCCACACGGAAAATCGTCGACTGCGCGGGACGAT
GATCTGGTGTCCGCGTGCGCACACTACATCCACAGGCCCGGGTTCGACGA
CTTTCTGCGCAGGCTGGAGTCTTGCGGACTACGGTATCGTCTTCGGAGAA
TGTCCGACATCCTTCCGGGAGACCTTTTGAAAGAAATTCACCGAAGCGCT
TCCATCGATATCGTGGGCGGCCCCGTGACGTCGTCTCGAACTCCTTCTTG
CCTAGAAGCGGCCCGTGATCGTGACGGCGGCGGCAAGGAAGGTTGTGGTG
GCGGTGTGGGTGTAGACGGAGGAGAGTCGCCGTCGGGGTCTGTTGTTGCC
GCCGCCGCCGCCGCCGCCGCCGCGGGTTCTTGCAACCTTTTCGACGAGTT
CGTTATGTGCGAGATCTTTCGCGCCACCGAGGAACAGCAGCAAAGGCGAA
TGTCATGAGGCATTTTTTCGTGCGTCAAAAAACGAGCCGCGCTTTTCAGA
TTTCTGGCCGCGGTGGTCTCGTTTGTCCTTGAGAACGGTTGGTTGTTTTC
AGGTTCAAGACAATGCAGCACACCCGAAGGAAGGATCAGGCTCTGCGAGA
AGGCCGTGGAGGAAAATGACAACATGGTGTGCACGATCGTTGTGGTACAT
ACGGCTGTGTAGCGGTTTGATCGGCTGCGGTATCTGGCACCACGACTTGT
CTAGCGCTTGCGCATGGCGGCAGAGACACGGTCGACGTGTTGGATATTCC
AGGCTAAACTCGTCGTGTGCAGCAGCAGCAGCTGCCGCAGCTGTTGTCCA
CCTTCAGT
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig948:3214..4471+

>mRNA_E_fasciculatus_S2_contig948.17511.1 ID=mRNA_E_fasciculatus_S2_contig948.17511.1|Name=mRNA_E_fasciculatus_S2_contig948.17511.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=309bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig948:3214..4471+ (Ectocarpus fasciculatus EfasUO2)
ATGTCCGACATCCTTCCGGGAGACCTTTTGAAAGAAATTCACCGAAGCGC
TTCCATCGATATCGTGGGCGGCCCCGTGACGTCGTCTCGAACTCCTTCTT
GCCTAGAAGCGGCCCGTGATCGTGACGGCGGCGGCAAGGAAGGTTGTGGT
GGCGGTGTGGGTGTAGACGGAGGAGAGTCGCCGTCGGGGTCTGTTGTTGC
CGCCGCCGCCGCCGCCGCCGCCGCGGGTTCTTGCAACCTTTTCGACGAGT
TCGTTATGTGCGAGATCTTTCGCGCCACCGAGGAACAGCAGCAAAGGCGA
ATGTCATGA
back to top