mRNA_E_fasciculatus_S2_contig9479.17509.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9479.17509.1
Unique NamemRNA_E_fasciculatus_S2_contig9479.17509.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9479.17509.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.640e-28
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 1 
Query:    1 GPRWFDFSGAPDVAGFNASSCPPSITWGSRDSFYQTGLDEQGHPYYTPGLRECVDSVKRLSECEAMYYFPTDVDVCSSS-------YYPNTNGGLNGK-----RKN-----------APSLEIHVRDDHVSLD 330
            GPRW+DF+ APDV GF+ASSCP  ITWG R++F+  GLD   HPYY+P L  CV++V RL+ CEA Y+FP  VDVC S         +     G +G+     +KN           A +L IHVR   + +D
Sbjct:  199 GPRWYDFTNAPDVEGFDASSCPADITWGGREAFHLLGLDNPSHPYYSPNLSTCVETVPRLTGCEAAYFFPMGVDVCLSDRTATGDVVHEQRGNGASGRSGPGVKKNLVGSEEEEGRPANTLVIHVRSGDIFVD 331
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BLAST of mRNA_E_fasciculatus_S2_contig9479.17509.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.010e-24
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 GPRWFDFSGAPDVAGFNASSCPPSITWGSRDSFYQTGLDEQGHPYYTPGLRECVDSVKRLSECEAMYYFPTD--VDVC 228
            GPR FDFS APDV GF+ SSCPP ITWG  ++F+  GL ++GHPYYTP L EC+  + R++ CEA Y+FP D  VD+C
Sbjct:  223 GPRNFDFSSAPDVEGFDYSSCPPEITWGGTNAFHLQGLRDEGHPYYTPELFECIKELPRIAGCEAAYFFPKDMAVDMC 300
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BLAST of mRNA_E_fasciculatus_S2_contig9479.17509.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.320e-23
Identity = 49/105 (46.67%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:    1 GPRWFDFSGAPDVAGFNASSCPPSITWGSRDSFYQTGLDEQGHPYYTPGLRECVDSVKRLSECEAMYYFPTDVDVCSSSYYPNTNGGLNGKRKNAPSLEIHVRDD 315
            GPR FDFS APDV GF++SSCPP I WG   +F+  GL ++GHPYYTPGL  C+  +  +  CEA Y+FPTD+ V          GG     KN   +    +DD
Sbjct:  228 GPRNFDFSSAPDVEGFDSSSCPPEIKWGGTQAFHLEGLRDEGHPYYTPGLFTCIKELPWIIGCEAAYFFPTDMAVPMCPLDETAEGG----NKNVRDISEKPKDD 328
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BLAST of mRNA_E_fasciculatus_S2_contig9479.17509.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.530e-23
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:    1 GPRWFDFSGAPDVAGFNASSCPPSITWGSRDSFYQTGLDEQGHPYYTPGLRECVDSVKRLSECEAMYYFPTDVDVCSSS 237
            GPRWFDFS APDV GF++S+C   ITW  + +F+   LD   H ++TPGL+EC+    RL  CEA YYFP DVD+C ++
Sbjct:  170 GPRWFDFSSAPDVDGFDSSACSADITWAGQRAFHMHQLDSPEHEFHTPGLKECIARAPRLLACEAAYYFPKDVDLCHAT 248
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9479.17509.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.000e-19
Identity = 45/110 (40.91%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:    1 GPRWFDFSGAPDVAGFNASSCPPSITWGSRDSFYQTGLDEQGHPYYTPGLRECVDSVKRLSECEAMYYFPTDVDVCSSSYYPNTNGGLNGKRKNAPSLEIHVRDDHVSLD 330
            GPRWFDFS APDV G +   CP  I W +R +    GLD      Y P +R+C+    RL  CEA YYFP D+ VC     P    G       A +L +HVR   +  D
Sbjct:  135 GPRWFDFSSAPDVDGVDLGRCPIDIIWENRGAMQMAGLDNPERNKYLPHIRDCMAKAPRLLGCEAAYYFPQDIAVCPRKKKPFLALGDRNPPGGAGNLVLHVRSGDIFFD 244
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9479.17509.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized1.640e-2844.36protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2... [more]
Uncharacterized2.010e-2458.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.320e-2346.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.530e-2353.16protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Uncharacterized1.000e-1940.91protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9479contigE_fasciculatus_S2_contig9479:2360..3104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size378
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842595.833419-CDS-E_fasciculatus_S2_contig9479:2360..26231696842595.833419-CDS-E_fasciculatus_S2_contig9479:2360..2623Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9479 2361..2623 -
1696842595.8454843-CDS-E_fasciculatus_S2_contig9479:2992..31041696842595.8454843-CDS-E_fasciculatus_S2_contig9479:2992..3104Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9479 2993..3104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9479.17509.1prot_E_fasciculatus_S2_contig9479.17509.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9479 2361..3104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9479.17509.1

>prot_E_fasciculatus_S2_contig9479.17509.1 ID=prot_E_fasciculatus_S2_contig9479.17509.1|Name=mRNA_E_fasciculatus_S2_contig9479.17509.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=125bp
GPRWFDFSGAPDVAGFNASSCPPSITWGSRDSFYQTGLDEQGHPYYTPGL
RECVDSVKRLSECEAMYYFPTDVDVCSSSYYPNTNGGLNGKRKNAPSLEI
HVRDDHVSLDGDGGMVEAMSRSEED
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mRNA from alignment at E_fasciculatus_S2_contig9479:2360..3104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9479.17509.1 ID=mRNA_E_fasciculatus_S2_contig9479.17509.1|Name=mRNA_E_fasciculatus_S2_contig9479.17509.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=745bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9479:2360..3104- (Ectocarpus fasciculatus EfasUO2)
GGACCTCGCTGGTTTGACTTCTCCGGCGCTCCCGACGTAGCGGGGTTCAA
CGCCAGCAGCTGCCCTCCCAGCATAACGTGGGGCAGCAGAGATTCGTTCT
ATCAGACAGGACGTGAGCAAGATCTTTCGTGGGCATGAAAGTTTCAAGTC
ACGCGCGTGTCCCTACGAGAAGTATATTCGGGTTAAGACATATCAGTGGG
TGGGTGTGAGTTGTATGTACTGCGCAGTGCCCAGGGTGTGCGATATTTTC
AACATGGTGCATGTTTCTCAGTGTTGGGAAAGTGAATGGGCCGTCCCAAC
CACATTTCACTTTAGACTTGTCGGGATGCATCCCCACTACGCGCTACGCA
CCGCCATATTGCGTATGCTCCAGGAATGAACAGTTCACTTAAACCAAACA
ATGAGTATAGACTGTAGTACCGCGAACATATCTTGAGCATATCATTGGCC
TAACTCTCTCCAACCGTACTATTCACGCCAGTGGATGAACAGGGCCATCC
GTACTACACTCCAGGGCTCCGCGAGTGCGTGGATTCGGTGAAGCGGCTCA
GCGAATGCGAAGCGATGTACTATTTCCCGACGGACGTCGACGTCTGCAGC
AGCTCGTATTACCCCAACACCAACGGGGGCTTGAACGGGAAAAGAAAAAA
TGCACCTTCGCTCGAGATTCACGTGCGAGACGATCATGTTAGCCTTGATG
GTGATGGTGGAATGGTGGAAGCAATGTCAAGAAGTGAAGAAGACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9479:2360..3104-

>mRNA_E_fasciculatus_S2_contig9479.17509.1 ID=mRNA_E_fasciculatus_S2_contig9479.17509.1|Name=mRNA_E_fasciculatus_S2_contig9479.17509.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=375bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9479:2360..3104- (Ectocarpus fasciculatus EfasUO2)
GGACCTCGCTGGTTTGACTTCTCCGGCGCTCCCGACGTAGCGGGGTTCAA
CGCCAGCAGCTGCCCTCCCAGCATAACGTGGGGCAGCAGAGATTCGTTCT
ATCAGACAGGACTGGATGAACAGGGCCATCCGTACTACACTCCAGGGCTC
CGCGAGTGCGTGGATTCGGTGAAGCGGCTCAGCGAATGCGAAGCGATGTA
CTATTTCCCGACGGACGTCGACGTCTGCAGCAGCTCGTATTACCCCAACA
CCAACGGGGGCTTGAACGGGAAAAGAAAAAATGCACCTTCGCTCGAGATT
CACGTGCGAGACGATCATGTTAGCCTTGATGGTGATGGTGGAATGGTGGA
AGCAATGTCAAGAAGTGAAGAAGAC
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