mRNA_E_fasciculatus_S2_contig947.17502.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig947.17502.1
Unique NamemRNA_E_fasciculatus_S2_contig947.17502.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig947.17502.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.130e-54
Identity = 108/119 (90.76%), Postives = 111/119 (93.28%), Query Frame = 3 
Query:    3 GGVGSNESAAAARKGEIGTEPAEYLASSQAGHIRLQAGGTVYSDSVVGEIKMDGPPAASSREEKSGDDIGGDEAGEKKGTVHSEALCVSLGAAGEKERAFDFVVPTGRWVHLAIVASSV 359
            GGV SNES+AA RKGEIGTEPAEYLASSQAGHIRLQAGGTVYSDSVV EI++DGPPAASSREEKSGD    DEAGEKK TVHSEALCVSLGAAGEKERAFDFVVPTGRWVHLAIVASSV
Sbjct: 5951 GGVASNESSAA-RKGEIGTEPAEYLASSQAGHIRLQAGGTVYSDSVVAEIEVDGPPAASSREEKSGDXXX-DEAGEKKSTVHSEALCVSLGAAGEKERAFDFVVPTGRWVHLAIVASSV 6067
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BLAST of mRNA_E_fasciculatus_S2_contig947.17502.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 7.030e-49
Identity = 101/120 (84.17%), Postives = 102/120 (85.00%), Query Frame = 3 
Query:    6 GVGSNESAAAARKGEIGTEPAEYLASSQAGHIRLQAGGTVYSDSVVGEIKMDGPPAASSREEKSGDDIGGDEAGEKKGTVHSEALCVSLGAAGEKERAFDFVVPTGRWVHLAIVASSVAE 365
            GV SNESAAA RKGEIGTEPAEYLASSQAGHIRLQAGGTVYSDSVVGEIKMDGPP               DEAGEK+ TVHSEALCVSLGAAGEKERAFDFVVPTGRWVHLAIVASSVAE
Sbjct: 5416 GVASNESAAA-RKGEIGTEPAEYLASSQAGHIRLQAGGTVYSDSVVGEIKMDGPPXXXXXXXXXXXXXX-DEAGEKRSTVHSEALCVSLGAAGEKERAFDFVVPTGRWVHLAIVASSVAE 5533
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig947.17502.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.130e-5490.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.030e-4984.17protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig947contigE_fasciculatus_S2_contig947:18377..18743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size367
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842595.0860584-CDS-E_fasciculatus_S2_contig947:18376..187421696842595.0860584-CDS-E_fasciculatus_S2_contig947:18376..18742Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig947 18377..18742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig947.17502.1prot_E_fasciculatus_S2_contig947.17502.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig947 18377..18742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig947.17502.1

>prot_E_fasciculatus_S2_contig947.17502.1 ID=prot_E_fasciculatus_S2_contig947.17502.1|Name=mRNA_E_fasciculatus_S2_contig947.17502.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=122bp
PAASGATSRRRRHARARSGRNRRSTWLPLRPDTSGSRRGARCTPTLWSGR
SRWTGRRRLLPGKRRAGTTLAATKQGRRRARSTPRLSASPWAQPGRRSGR
STSWCRPDGGCTWPSWRPRWRR
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mRNA from alignment at E_fasciculatus_S2_contig947:18377..18743+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig947.17502.1 ID=mRNA_E_fasciculatus_S2_contig947.17502.1|Name=mRNA_E_fasciculatus_S2_contig947.17502.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=367bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig947:18377..18743+ (Ectocarpus fasciculatus EfasUO2)
CCGGCGGCGTCGGGAGCAACGAGTCGGCGGCGGCGGCACGCAAGGGCGAG
ATCGGGACGGAACCGGCGGAGTACCTGGCTTCCTCTCAGGCCGGACACAT
CAGGCTCCAGGCGGGGGGCACGGTGTACTCCGACTCTGTGGTCGGGGAGA
TCAAGATGGACGGGCCGCCGGCGGCTTCTTCCAGGGAAGAGAAGAGCGGG
GACGACATTGGCGGCGACGAAGCAGGGGAGAAGAAGGGCACGGTCCACTC
CGAGGCTCTCTGCGTCTCCCTGGGCGCAGCCGGGGAGAAGGAGCGGGCGT
TCGACTTCGTGGTGCCGACCGGACGGTGGGTGCACCTGGCCATCGTGGCG
TCCTCGGTGGCGGAGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig947:18377..18743+

>mRNA_E_fasciculatus_S2_contig947.17502.1 ID=mRNA_E_fasciculatus_S2_contig947.17502.1|Name=mRNA_E_fasciculatus_S2_contig947.17502.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=366bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig947:18377..18743+ (Ectocarpus fasciculatus EfasUO2)
CCGGCGGCGTCGGGAGCAACGAGTCGGCGGCGGCGGCACGCAAGGGCGAG
ATCGGGACGGAACCGGCGGAGTACCTGGCTTCCTCTCAGGCCGGACACAT
CAGGCTCCAGGCGGGGGGCACGGTGTACTCCGACTCTGTGGTCGGGGAGA
TCAAGATGGACGGGCCGCCGGCGGCTTCTTCCAGGGAAGAGAAGAGCGGG
GACGACATTGGCGGCGACGAAGCAGGGGAGAAGAAGGGCACGGTCCACTC
CGAGGCTCTCTGCGTCTCCCTGGGCGCAGCCGGGGAGAAGGAGCGGGCGT
TCGACTTCGTGGTGCCGACCGGACGGTGGGTGCACCTGGCCATCGTGGCG
TCCTCGGTGGCGGAGG
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