mRNA_E_fasciculatus_S2_contig945.17483.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig945.17483.1
Unique NamemRNA_E_fasciculatus_S2_contig945.17483.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig945.17483.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig945contigE_fasciculatus_S2_contig945:7441..7911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size452
Hectar predicted targeting categorysignal peptide
Exons2
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842593.0788612-UTR-E_fasciculatus_S2_contig945:7440..75811696842593.0788612-UTR-E_fasciculatus_S2_contig945:7440..7581Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig945 7441..7581 -
1696842593.1224732-UTR-E_fasciculatus_S2_contig945:7867..79111696842593.1224732-UTR-E_fasciculatus_S2_contig945:7867..7911Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig945 7868..7911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842593.0972564-CDS-E_fasciculatus_S2_contig945:7581..77091696842593.0972564-CDS-E_fasciculatus_S2_contig945:7581..7709Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig945 7582..7709 -
1696842593.1114502-CDS-E_fasciculatus_S2_contig945:7728..78671696842593.1114502-CDS-E_fasciculatus_S2_contig945:7728..7867Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig945 7729..7867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig945.17483.1prot_E_fasciculatus_S2_contig945.17483.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig945 7582..7867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig945.17483.1

>prot_E_fasciculatus_S2_contig945.17483.1 ID=prot_E_fasciculatus_S2_contig945.17483.1|Name=mRNA_E_fasciculatus_S2_contig945.17483.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=89bp
MILMCPFLTRAKAIVLGRSRVPFVVCTVVFVHSSVRGEWISCWSCENFSL
SKCQGRHVWLLVASNRIQESSKTESLHHLPRSRLRGRT*
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mRNA from alignment at E_fasciculatus_S2_contig945:7441..7911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig945.17483.1 ID=mRNA_E_fasciculatus_S2_contig945.17483.1|Name=mRNA_E_fasciculatus_S2_contig945.17483.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=471bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig945:7441..7911- (Ectocarpus fasciculatus EfasUO2)
TTGACTTCCAAAGCGAGCTCCAAAAGTTCGACAAGGTAACTACTATGATA
CTGATGTGCCCATTTTTGACACGAGCAAAGGCCATAGTTCTCGGAAGAAG
CCGAGTTCCGTTCGTCGTTTGTACTGTAGTCTTTGTGCACAGTTCGGTCC
GGGGCGAATGGATATCCTGTTGGTCATGCGAGAGCGCACTCCAGCTGACG
AGATTTTTCACTTTCTAAGTGCCAAGGGAGGCATGTGTGGTTACTTGTGG
CATCAAATCGTATCCAGGAAAGTTCGAAAACGGAAAGTCTGCACCACCTG
CCCCGCTCACGTCTGCGGGGTAGAACGTGATTTTGTCATGTATGGCCATG
TGTTCCGTAGGACGAAAGCTTGAGGCGGAGCAGTACAAGCATGGCATGCT
ATTCAGATTCGAGCCGTTGGCGTATCGCAGTCTGCGTTCGTGAACGCTGT
TGCGAGGTTGTTTGGTAGTGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig945:7441..7911-

>mRNA_E_fasciculatus_S2_contig945.17483.1 ID=mRNA_E_fasciculatus_S2_contig945.17483.1|Name=mRNA_E_fasciculatus_S2_contig945.17483.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig945:7441..7911- (Ectocarpus fasciculatus EfasUO2)
ATGATACTGATGTGCCCATTTTTGACACGAGCAAAGGCCATAGTTCTCGG
AAGAAGCCGAGTTCCGTTCGTCGTTTGTACTGTAGTCTTTGTGCACAGTT
CGGTCCGGGGCGAATGGATATCCTGTTGGTCATGCGAGAATTTTTCACTT
TCTAAGTGCCAAGGGAGGCATGTGTGGTTACTTGTGGCATCAAATCGTAT
CCAGGAAAGTTCGAAAACGGAAAGTCTGCACCACCTGCCCCGCTCACGTC
TGCGGGGTAGAACGTGA
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