mRNA_E_fasciculatus_S2_contig9433.17473.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9433.17473.1
Unique NamemRNA_E_fasciculatus_S2_contig9433.17473.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9433.17473.1 vs.
Match: Harp ((Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 2.680e-43
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:    1 QVNCLRFAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKENIQIVRDAKEGV 240
            QV CLRFAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKE IQIVRDAK GV
Sbjct:  120 QVECLRFAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKEAIQIVRDAKMGV 199
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BLAST of mRNA_E_fasciculatus_S2_contig9433.17473.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SNX3_9SPIT)

HSP 1 Score: 92.4 bits (228), Expect = 1.570e-22
Identity = 33/72 (45.83%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   19 FAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKENIQIVRDAKE 234
            FA+R  G++LLGD+MGLGKT+QA+A+ CA+R+DWPVL+V P+S++  W +E  +W+PG+  + + +++ +++
Sbjct:    4 FAVRHGGRILLGDDMGLGKTIQAIAICCAFRQDWPVLIVVPNSVRFVWADELERWIPGMGPKGVNVIQSSQD 75
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BLAST of mRNA_E_fasciculatus_S2_contig9433.17473.1 vs.
Match: DNA (annealing helicase and endonuclease ZRANB3-like n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=UPI000742A16C)

HSP 1 Score: 89.7 bits (221), Expect = 1.670e-21
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   13 LRFAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKENIQIVRD 225
            + FA+ K G+ ++ DEMGLGKT+QA+AVACAY++DWP+LVV PSSLK  W  E  +W+P L   +I +V +
Sbjct:   38 VEFALSKSGRCMIADEMGLGKTVQAIAVACAYKQDWPLLVVVPSSLKYPWIEELERWIPELQPTDINLVEN 108
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BLAST of mRNA_E_fasciculatus_S2_contig9433.17473.1 vs.
Match: Uncharacterized (protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CQ71_9CILI)

HSP 1 Score: 95.5 bits (236), Expect = 3.630e-21
Identity = 40/77 (51.95%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 QVNCLRFAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKENIQIVRDAK 231
            Q+  + FA+   G+ L+GDEMG+GKT+QA+A A AY ++WPVLV+ P+S+K NWR+E +KWVPGL K++  +V+  K
Sbjct:  195 QIEGVNFALAHFGRALIGDEMGVGKTIQAIAAAYAYVDEWPVLVICPASIKLNWRDEFLKWVPGLEKKDFYVVKSKK 271
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BLAST of mRNA_E_fasciculatus_S2_contig9433.17473.1 vs.
Match: Zinc (finger RANBP2-type containing 3 n=4 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SJH1_9TELE)

HSP 1 Score: 95.5 bits (236), Expect = 3.690e-21
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:   13 LRFAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKENIQIVRD 225
            +RFA+ + G+ ++ DEMGLGKTLQA+AVACAYR+DWP+L+V PSSLK  W  E  KW+P L  E+I +V +
Sbjct:   41 VRFALSRDGRCMIADEMGLGKTLQAIAVACAYRQDWPLLIVVPSSLKYPWIEELEKWIPELDPEDINLVEN 111
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BLAST of mRNA_E_fasciculatus_S2_contig9433.17473.1 vs.
Match: DNA (annealing helicase and endonuclease ZRANB3-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NRC9_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 5.040e-21
Identity = 38/76 (50.00%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:   13 LRFAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKENIQIVRDAKEGV 240
            L+F I++KG+ L+ DE GLGKT+QA++++  Y+EDWPVLV  P+SL+D+WRNE ++W+P L + N+ IV + K  +
Sbjct:  406 LKFGIQQKGRCLIADEPGLGKTIQAISISTYYKEDWPVLVACPASLRDHWRNEYLRWIPELHESNVVIVDNGKRQI 481
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BLAST of mRNA_E_fasciculatus_S2_contig9433.17473.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAD3_GUITC)

HSP 1 Score: 94.7 bits (234), Expect = 5.250e-21
Identity = 37/68 (54.41%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   13 LRFAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKENIQI 216
            +RFA+++KG++L+GDEMGLGKTLQALAVA AY+ +WP+L++ PSSL+ NW  E  +W+ G+ +E +++
Sbjct:   25 VRFALKRKGRVLIGDEMGLGKTLQALAVAAAYKREWPLLIICPSSLRLNWAQECSRWLEGMKEEPLEV 92
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BLAST of mRNA_E_fasciculatus_S2_contig9433.17473.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M042_9CRYP)

HSP 1 Score: 87.0 bits (214), Expect = 1.430e-20
Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   34 KGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKENIQIVR---DAKEG 237
            +G++L+GDEMGLGKTLQA+AV+  YREDWP+LVVAPS+L+ +WR E ++W+P L + ++ +V    DA +G
Sbjct:    2 EGRVLIGDEMGLGKTLQAIAVSRIYREDWPLLVVAPSALRLSWRQELLRWLPELGEGDVNVVMTGADALDG 72
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BLAST of mRNA_E_fasciculatus_S2_contig9433.17473.1 vs.
Match: DNA (annealing helicase and endonuclease ZRANB3-like n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D8E33F)

HSP 1 Score: 90.9 bits (224), Expect = 2.050e-20
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   13 LRFAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKENIQIVRD 225
            +RFA+ K G+ ++ DEMGLGKT+QA+AVAC YRE+WP+L++ PSSLK  W  E  KWVP L  ++  ++ +
Sbjct:   44 VRFALEKAGRCMIADEMGLGKTIQAIAVACFYREEWPLLIIVPSSLKYPWIEEMEKWVPELNPDDFNLIEN 114
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9433.17473.1 vs.
Match: Helicase, (putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GX54_ACACA)

HSP 1 Score: 92.8 bits (229), Expect = 3.240e-20
Identity = 38/72 (52.78%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:   19 FAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKENIQIVRDAKE 234
            FA+++ G+ L+ DEMGLGKTLQA+A+A  Y+EDWPVLVVAPSS++  W +   KW+PGL  + I+++   K+
Sbjct:  375 FALQRNGRALIADEMGLGKTLQAIAIAAYYKEDWPVLVVAPSSVRVQWADNFEKWIPGLRPDQIKVIMKTKD 446
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9433.17473.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Harp2.680e-4396.25(Smarcal1)-related n=1 Tax=Ectocarpus siliculosus ... [more]
Hypothetical1.570e-2245.83protein (Fragment) n=1 Tax=Strombidinopsis acumina... [more]
DNA1.670e-2153.52annealing helicase and endonuclease ZRANB3-like n=... [more]
Uncharacterized3.630e-2151.95protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID... [more]
Zinc3.690e-2157.75finger RANBP2-type containing 3 n=4 Tax=Paramormyr... [more]
DNA5.040e-2150.00annealing helicase and endonuclease ZRANB3-like n=... [more]
Uncharacterized5.250e-2154.41protein (Fragment) n=1 Tax=Guillardia theta (strai... [more]
Hypothetical1.430e-2054.93protein (Fragment) n=1 Tax=Cryptomonas curvata Tax... [more]
DNA2.050e-2052.11annealing helicase and endonuclease ZRANB3-like n=... [more]
Helicase,3.240e-2052.78putative n=1 Tax=Acanthamoeba castellanii str. Nef... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9433contigE_fasciculatus_S2_contig9433:469..1865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score158.3
Seed ortholog evalue1.5e-36
Seed eggNOG ortholog2880.D8LK86
Model size242
KEGG koko:K14440
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.annealing helicase activity
EggNOG OGsCOG0553@1,KOG1000@2759
EC3.6.4.12
Cds size240
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842592.037955-CDS-E_fasciculatus_S2_contig9433:468..5201696842592.037955-CDS-E_fasciculatus_S2_contig9433:468..520Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9433 469..520 +
1696842592.0609007-CDS-E_fasciculatus_S2_contig9433:1372..15331696842592.0609007-CDS-E_fasciculatus_S2_contig9433:1372..1533Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9433 1373..1533 +
1696842592.0733812-CDS-E_fasciculatus_S2_contig9433:1836..18631696842592.0733812-CDS-E_fasciculatus_S2_contig9433:1836..1863Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9433 1837..1863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9433.17473.1prot_E_fasciculatus_S2_contig9433.17473.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9433 469..1863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9433.17473.1

>prot_E_fasciculatus_S2_contig9433.17473.1 ID=prot_E_fasciculatus_S2_contig9433.17473.1|Name=mRNA_E_fasciculatus_S2_contig9433.17473.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=80bp
QVNCLRFAIRKKGKLLLGDEMGLGKTLQALAVACAYREDWPVLVVAPSSL
KDNWRNEAMKWVPGLTKENIQIVRDAKEGV
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mRNA from alignment at E_fasciculatus_S2_contig9433:469..1865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9433.17473.1 ID=mRNA_E_fasciculatus_S2_contig9433.17473.1|Name=mRNA_E_fasciculatus_S2_contig9433.17473.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1397bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9433:469..1865+ (Ectocarpus fasciculatus EfasUO2)
CAGGTGAACTGCCTCAGGTTCGCGATCAGGAAGAAGGGGAAGCTTCTGTT
AGGTGAGGGCCTGCTATGCTGGGGGGGAAGGCGTGCGAGTGTGGGAGATG
CATGTGCGTGTGTGTGTGTCTTTTTTATTAGCATCGACAGCGCTAACCGG
CTGACTATTGAAAATACGTCAGTCTCTGCGGTGGAAAACACAAAATTCTT
CTTAGAAGAGGCCACGACCTGCGTTTATGTGTGTGTTCGTCCGATCTTTC
ACCCTTGCACCCGTCTACATACCTTGTGGTGTACCAATACTATGTGGTTG
TGTTTGGCCATCGGCCTGGGTCATTCACACAGGAGGGATGTAGATACGTA
TGCTTCGGAATGAGCGCTTGCGGGGGTAGGTAGGGGAGTTCTGTCTAGAT
GCAGCTCCAATTTTTTCGACCGAGGTTTTAGTCCCTGGTCAAGCCACCAT
TCAAGCGCACAAGCCTTCCGTTGCCACTACCCCCCCCCTCCCCCCGTGCG
CTCACGGTAGGAGCGCGACCCGTTCGGCTTGGGTTCGTGATGTGGGGGGC
CAACGTACATATATCTATTGAACAATCAGCAAACATCACCACCAACCAGG
TCTTTACATGCTGGGCGTCTAAACGCTTACAGCGCGATACGTCACTGAAA
CCCGGCCTATTGCATGGAGGGCGGCAGAGCCGATTGAACATGCGATATAT
ATATATATACATTTATTTTTTCCTCCCATCATTGGACTCTGTCGTCTGCC
CCTCTGGTCCCTATCCCCCACTTCTACTAGCTAGACGACCCAACCGGGGT
CACATAGGGGGGGGGGGTTTGGACCCCCTCCTGCGGTTCCTGCCTGAGAT
ATTTTTATCGGTACGTGCGTGACCCTTCGCTTGTATTTCTTCTTGTCCCG
ACAGGCGATGAGATGGGCCTGGGCAAAACGCTTCAGGCGTTGGCCGTCGC
ATGCGCCTACCGAGAAGACTGGCCGGTGCTGGTGGTGGCCCCTTCGAGCC
TCAAGGACAACTGGCGGAACGAGGCCATGAAGTGGGTGCCCGGGCTGACC
AAGGAGAACATTCAGGTATGTGGGCGAGGGGCGCCGAGGGGGGGTGTTCT
GCCCCAGTGTTATTGTTTACTTCGTTTCTGTTGCTGTGTGTTGTTGTCGT
GGTTGTTAACCATCGGTCCACCTGGAGTTCTCACGTGGAAGAACCTCGCC
GGCTCACATGCTGTTTCTGCCTCCGCCGCCGTGGCTGCTGCTGGTGTTAC
GGTTACCCTTTATTCCTGCCTGCTGCTGCTGTCGTGCACGCACCGTCACG
TAAGCACGTACTAACACTAGCAGCGATTTCGCTGTGACAACAACAACCGC
ATTGACAATGAATGCCAGATCGTCCGGGACGCGAAGGAGGGTGTGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9433:469..1865+

>mRNA_E_fasciculatus_S2_contig9433.17473.1 ID=mRNA_E_fasciculatus_S2_contig9433.17473.1|Name=mRNA_E_fasciculatus_S2_contig9433.17473.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=240bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9433:469..1865+ (Ectocarpus fasciculatus EfasUO2)
CAGGTGAACTGCCTCAGGTTCGCGATCAGGAAGAAGGGGAAGCTTCTGTT
AGGCGATGAGATGGGCCTGGGCAAAACGCTTCAGGCGTTGGCCGTCGCAT
GCGCCTACCGAGAAGACTGGCCGGTGCTGGTGGTGGCCCCTTCGAGCCTC
AAGGACAACTGGCGGAACGAGGCCATGAAGTGGGTGCCCGGGCTGACCAA
GGAGAACATTCAGATCGTCCGGGACGCGAAGGAGGGTGTG
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