mRNA_E_fasciculatus_S2_contig9430.17472.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9430.17472.1
Unique NamemRNA_E_fasciculatus_S2_contig9430.17472.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9430.17472.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG0_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.020e-14
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:  342 VMVSHFNRRLSNSAWPASLRLLTPGRKFRHSLQGLGTWMPNLETLRLFD 488
            +M S FN+R+  SAWP SLR LT G KFR SLQGLGTWMPNLE+LRL +
Sbjct:    2 IMRSEFNQRIGRSAWPPSLRRLTLGHKFRQSLQGLGTWMPNLESLRLLE 50
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BLAST of mRNA_E_fasciculatus_S2_contig9430.17472.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.940e-12
Identity = 38/68 (55.88%), Postives = 43/68 (63.24%), Query Frame = 3 
Query:  327 GDNGRVMVSHFNRRLSNSAWPASLRLLTPGRKFRHSLQGLGTWMPNLETLRLFDH--GSSGHDVLRGI 524
            G    VM+S FN+R+    WP S+R LT G KF+ SLQGLGT MPNLE   L DH  GS   D LRGI
Sbjct:  316 GFENAVMLSAFNQRVDMCEWPVSMRRLTLGHKFKESLQGLGTRMPNLEAFHLLDHRNGSGSEDSLRGI 383
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BLAST of mRNA_E_fasciculatus_S2_contig9430.17472.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.990e-8
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 3 
Query:  333 NGRVMVSHFNRRLSNSAWPASLRLLTPGRKFRHSLQGLGTWMPNLETLRLFDHGSSG 503
            NG V+ ++F++ + +S  PA LR L  G  FR SLQGLGTWMPNLE L L  +  SG
Sbjct:  324 NGMVIFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLLHYHGSG 380
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9430.17472.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.260e-5
Identity = 29/69 (42.03%), Postives = 34/69 (49.28%), Query Frame = 3 
Query:  327 GDNGRVMVSHFNRRLSNSAWPASLRLLTPGRKFRHSLQGLGTWMPNLETLRLFDHGSSGHD---VLRGI 524
            G +  +M S F               LT G KFR SLQGLGTW+PNLE     DH +   D   +LRGI
Sbjct:  304 GFDHAIMFSEFXXXXXXXXXXXXXXXLTLGHKFRQSLQGLGTWIPNLEIFHFLDHSNGSGDEDSLLRGI 372
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9430.17472.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized3.020e-1469.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.940e-1255.88protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.990e-852.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.260e-542.03protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9430contigE_fasciculatus_S2_contig9430:503..1026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size526
Hectar predicted targeting categoryother localisation
Exons1
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842591.9939158-UTR-E_fasciculatus_S2_contig9430:502..8461696842591.9939158-UTR-E_fasciculatus_S2_contig9430:502..846Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9430 503..846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842592.0064082-CDS-E_fasciculatus_S2_contig9430:846..10261696842592.0064082-CDS-E_fasciculatus_S2_contig9430:846..1026Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9430 847..1026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9430.17472.1prot_E_fasciculatus_S2_contig9430.17472.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9430 847..1026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9430.17472.1

>prot_E_fasciculatus_S2_contig9430.17472.1 ID=prot_E_fasciculatus_S2_contig9430.17472.1|Name=mRNA_E_fasciculatus_S2_contig9430.17472.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=60bp
MVSHFNRRLSNSAWPASLRLLTPGRKFRHSLQGLGTWMPNLETLRLFDHG
SSGHDVLRGI
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mRNA from alignment at E_fasciculatus_S2_contig9430:503..1026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9430.17472.1 ID=mRNA_E_fasciculatus_S2_contig9430.17472.1|Name=mRNA_E_fasciculatus_S2_contig9430.17472.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=524bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9430:503..1026+ (Ectocarpus fasciculatus EfasUO2)
AAAAAATGTCCTAGTGGCCTCCGTCCCTGCAAAGGCTTTCTTTCGGAGGG
TTCTTCGACGAACCGGTCGAGGAAATAGAGTGGCCGACGTCACTTAAGAG
GCTTACTTTTCGAGGACGGTTCGACCAGCCTATCCAACGGGCGGTGTATC
CGGCATCTCTTGAGCAGCATACGCTTGGCACAGGTTTCAAATGGTGTATT
GAGGGCGTTGTGTGGCAAGATTCGCTTCAGAGGCTCGCTCTCGGGTGTAA
ATTCGACCAGCCAGTTGACAACGTGAAATAGCCAACCTCACTGCAAGAGC
TAACGTCTGAATTGTTGGGTCATCTAGGGGACAATGGGAGGGTGATGGTC
TCGCATTTCAATCGGCGTCTCAGCAACAGTGCTTGGCCTGCGTCGCTTCG
GCTACTCACACCGGGCCGCAAGTTCAGGCACTCATTGCAAGGACTCGGCA
CTTGGATGCCCAACCTTGAAACGCTTCGTCTTTTTGACCATGGTTCAAGT
GGCCATGACGTTCTCCGCGGAATC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9430:503..1026+

>mRNA_E_fasciculatus_S2_contig9430.17472.1 ID=mRNA_E_fasciculatus_S2_contig9430.17472.1|Name=mRNA_E_fasciculatus_S2_contig9430.17472.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9430:503..1026+ (Ectocarpus fasciculatus EfasUO2)
ATGGTCTCGCATTTCAATCGGCGTCTCAGCAACAGTGCTTGGCCTGCGTC
GCTTCGGCTACTCACACCGGGCCGCAAGTTCAGGCACTCATTGCAAGGAC
TCGGCACTTGGATGCCCAACCTTGAAACGCTTCGTCTTTTTGACCATGGT
TCAAGTGGCCATGACGTTCTCCGCGGAATC
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