mRNA_E_fasciculatus_S2_contig942.17468.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig942.17468.1
Unique NamemRNA_E_fasciculatus_S2_contig942.17468.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig942.17468.1 vs.
Match: Divergent (RAB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK97_ECTSI)

HSP 1 Score: 786 bits (2030), Expect = 8.770e-273
Identity = 472/554 (85.20%), Postives = 482/554 (87.00%), Query Frame = 1 
Query:    1 MGRSCCRRVLDALCPCFRRYRLGSSASVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDG-DETRQEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMSMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGGGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQSVVVLPAPSPTAGNTXXXXXXXXXXXXXXXXXXXAAERPQKHLPSSGRRGGRGGLGQGVPARAWALRAAAPPHRRHLSRAKSFSPRGWA---ATAAASRLQQQRRPESPVARSGTGDAATSSLLERPELSPVEVERGSEGAAFPKAGASTATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------SASKQLREASSFWLDKWGIKAAKTDATRERHSKKSRESHP 1623
            MGRSCCRRVLDALCPCFR+ RLGSS SVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDG D+TR+EEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGM+MLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRG GATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQ V+VLP         XXXXXXXXXXXXXXXXXXXAAERP + LPSS RRGGRGGLGQG  ARAWALRAAAPPHRRHLSRAKS SPRG A   A AAAS+  QQRRPESPVA SGTGDAATSSLLERPELSPVEVER SEGAAF K GAST  T                            XXXXXXXXXXXXXXXXX         SA+KQLREASSFWLDKWGIKAAKTDATRERHSK+ R S+P
Sbjct:    1 MGRSCCRRVLDALCPCFRQNRLGSSPSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGGDQTREEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMAMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQPVIVLPXXX-XXXXXXXXXXXXXXXXXXXXXXXXAAERPLQRLPSSARRGGRGGLGQGTTARAWALRAAAPPHRRHLSRAKSPSPRGLATASAAAAASQGLQQRRPESPVALSGTGDAATSSLLERPELSPVEVERRSEGAAFRKIGASTLATTTAAEDKESVLACGRRSSGTSPERTVSTXXXXXXXXXXXXXXXXXXXXXXXXEESATKQLREASSFWLDKWGIKAAKTDATRERHSKEFRGSYP 553
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig942.17468.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP3_9PHAE)

HSP 1 Score: 724 bits (1868), Expect = 1.580e-248
Identity = 426/527 (80.83%), Postives = 442/527 (83.87%), Query Frame = 1 
Query:    1 MGRSCCRRVLDALCPCFRRYRLGSSASVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGED-GDETRQEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMSMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGGGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRRYPQKAQSVVVLPAPSPTAGNTXXXXXXXXXXXXXXXXXXXAAERPQKHLPSSGRRGGRGGLGQGVPARAWALRAAAPPHRRHLSRAKSFSPRGWAATAAASRLQ--QQRRPESPVARSGTGDAATSSLLERPELSPVEVERGSEGAAFPKAGASTATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------SASKQLREASSFWL 1545
            MGRSCCRR LDALCPCFRR+RLGSS SVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGED GD+ R+EE AVAGKTLPSGGRGKGGST KQAP ADL+VKINVYDTSGKPGYR+VNSTYLLAFDAVLFVYDISSVSTLNELR+YF++PEHR+KLAAKKKAGM+MLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRG GATVKKTMQKVPGLQRALRTRASVLDVF GLTGRRRYPQKAQ V +LPA  PTAGN XXXXXXXXXXXXXXXXXXX  ERP +   SS RRGGRGGLGQG  A+AWALRAAAPPHR HLSRAKS SPRG   TAAA+  Q  QQRRPESPVARSGTGDAATSSLLERPELSPV+VERGSEGAAF K GAST  T                                        XXXXX         SA+KQLREASSFWL
Sbjct:    1 MGRSCCRRALDALCPCFRRHRLGSSTSVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDEGDQAREEETAVAGKTLPSGGRGKGGSTAKQAPHADLKVKINVYDTSGKPGYRDVNSTYLLAFDAVLFVYDISSVSTLNELRQYFNNPEHREKLAAKKKAGMAMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLARTRLKQSAGRGRGATVKKTMQKVPGLQRALRTRASVLDVFTGLTGRRRYPQKAQPVGILPAAPPTAGNAXXXXXXXXXXXXXXXXXXXX-ERPLQRPSSSARRGGRGGLGQGTTAQAWALRAAAPPHRCHLSRAKSSSPRGLT-TAAAAAFQGLQQRRPESPVARSGTGDAATSSLLERPELSPVDVERGSEGAAFRKGGASTLATTTAAEDKESVLACGRRSSGTSPERTVSTSGGSHGDVSQGAXXXXXXXXXXXAEESATKQLREASSFWL 525
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig942.17468.1 vs.
Match: Uncharacterized (protein n=6 Tax=Prunus TaxID=3754 RepID=M5X0Z8_PRUPE)

HSP 1 Score: 107 bits (266), Expect = 2.230e-22
Identity = 69/228 (30.26%), Postives = 109/228 (47.81%), Query Frame = 1 
Query:   73 SASVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGDETRQEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMSMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLA 756
            +A  + A  +HD  +  +L G+ GVGK+ L  R+ DG FT     T G+DF I+T++L      DG                                   ++K+ ++DT+G+  +R + + Y      +L VYD++  S+ N +R +  + E    ++  K      +LVGNK DM  S+R V +  GQ  A E+G+ F+E SAKT  NV E F F+  R + + LA
Sbjct:    2 AAPPARARADHDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL------DG----------------------------------KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASVSVNK------ILVGNKADMDESKRAVPASKGQALADEYGIKFLETSAKTNMNVEEVF-FSIGRDIKQRLA 182
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig942.17468.1 vs.
Match: RAB (family n=24 Tax=Chromadorea TaxID=119089 RepID=Q9UAQ6_CAEEL)

HSP 1 Score: 103 bits (258), Expect = 2.020e-21
Identity = 64/207 (30.92%), Postives = 104/207 (50.24%), Query Frame = 1 
Query:  100 EHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGDETRQEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMSMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFM 720
            E+D     +L G+ GVGK+ L  R+ D  +T     T GVDF I+T++L                   GKT                      +K+ ++DT+G+  +R + S+Y      ++ VYDI+   T N ++++  +    D+ A +    ++ LLVGNKCD+  ++R V +Q  QD A + G+PF+E SAK+ TNV +AF+
Sbjct:    7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL------------------DGKT----------------------IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDITDQETFNNVKQWLQEI---DRYACE---NVNKLLVGNKCDLT-AKRAVETQAAQDYAGQLGIPFLETSAKSSTNVEQAFL 166
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig942.17468.1 vs.
Match: ras-related (protein RABE1a-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D62EF03)

HSP 1 Score: 102 bits (253), Expect = 1.210e-20
Identity = 66/230 (28.70%), Postives = 107/230 (46.52%), Query Frame = 1 
Query:   73 SASVSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGDETRQEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMSMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHLART 762
            +A  + A  ++D  +  +L G+ GVGK+ L  R+ DG FT     T G+DF I+T++                  + GK                      ++K+ ++DT+G+  +R + + Y      +L VYD++  ++ N +R +  + E            ++ +LV NK DM  SQR V +  GQ  A E+GM F+E SAKT  NV E F F   R + + L+ T
Sbjct:    2 AAPPARARADYDFLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTVE------------------IDGK----------------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHAS------DNVNKILVANKADMDESQRAVPTSKGQALADEYGMKFLETSAKTNMNVEEVF-FTIARDIKQRLSET 184
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig942.17468.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8IR56_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.410e-20
Identity = 61/213 (28.64%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:   82 VSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGDETRQEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSD-PEHRDKLAAKKKAGMSMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAF 717
            +S AS  +DM +  ++ G+ GVGKT L  R+ +  F+     T G+DF IK +D+                                           ++K+ ++DT+G+  +R + ++Y      +L VYD++   +   +R + S   +H D         ++ +LVGNKCDM + ++ V +  GQ  AAEFG+PF EVSAK    V E+F
Sbjct:    1 MSQASAPYDMQIKLLMIGDSGVGKTCLLLRYANDSFSPTFITTIGIDFKIKNVDI----------------------------------------QGTRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHAD-------VHVNKILVGNKCDM-MDEKVVSTAEGQKLAAEFGIPFAEVSAKNDIKVDESF 165
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig942.17468.1 vs.
Match: Ras-related (protein Rab-8A n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZIW7_9ARAE)

HSP 1 Score: 101 bits (251), Expect = 1.870e-20
Identity = 65/220 (29.55%), Postives = 104/220 (47.27%), Query Frame = 1 
Query:   94 SGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGDETRQEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMSMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEHL 753
            S  +D  +  +L G+ GVGK+ L  R+ D  FT     T G+DF I+T++L      DG                                   ++K+ ++DT+G+  +R + + Y      +L VYD++   + N +R +FS+ E           G++ +L+GNKCD  L ++ +  + GQ  A EFG+ F+E SAK  TNV EAF F   R + + L
Sbjct:    6 SAAYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTPSFITTIGIDFKIRTIEL------DG----------------------------------KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRNWFSNIEQHAS------EGVNKILIGNKCDW-LEKKVIAKEQGQLLADEFGIKFLETSAKANTNVEEAF-FTLARDIKKRL 177
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig942.17468.1 vs.
Match: GTP-binding (protein ypt2 n=2 Tax=Endocarpon pusillum TaxID=364733 RepID=U1GWA9_ENDPU)

HSP 1 Score: 100 bits (250), Expect = 2.820e-20
Identity = 61/205 (29.76%), Postives = 99/205 (48.29%), Query Frame = 1 
Query:  103 HDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGDETRQEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMSMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAF 717
            +D  +  +L G+ GVGK+    R+ +  FT     T G+DF I+T+DL      DG                                   +VK+ ++DT+G+  +R + + Y      +L VYD++   + + +R +FS+ E           G++ +L+GNKCD    +R V +Q GQD A E  +PF+EVSAK+ TN+ +AF
Sbjct:    7 YDFLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIDL------DG----------------------------------KRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDRKSFDNIRTWFSNVEQHAS------EGVNKILIGNKCDWE-EKRAVSTQQGQDLADELNIPFLEVSAKSNTNIEKAF 164
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig942.17468.1 vs.
Match: Ras-related (protein Rab-8A n=2 Tax=Sordariales TaxID=5139 RepID=A0A175VY54_9PEZI)

HSP 1 Score: 100 bits (249), Expect = 3.380e-20
Identity = 61/212 (28.77%), Postives = 102/212 (48.11%), Query Frame = 1 
Query:   82 VSGASGEHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGDETRQEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMSMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAF 717
            +S  +  +D  +  +L G+ GVGK+    R+ +  FT     T G+DF I+T++L      DG                                   +VK+ ++DT+G+  +R + + Y      +L VYD++   + N +R +F++ E           G++ +L+GNKCD    +R V ++ GQ  A E G+PF+EVSAKT TN+ +AF
Sbjct:    1 MSSGNRNYDFLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIEL------DG----------------------------------KRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRTWFANVEQHAT------EGVNKILIGNKCDWE-EKRVVSTERGQQLADELGIPFLEVSAKTNTNIDQAF 165
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig942.17468.1 vs.
Match: Putative (small GTPase superfamily n=7 Tax=asterids TaxID=71274 RepID=A0A251VAU8_HELAN)

HSP 1 Score: 100 bits (248), Expect = 4.150e-20
Identity = 65/210 (30.95%), Postives = 104/210 (49.52%), Query Frame = 1 
Query:  100 EHDMSLNFILHGECGVGKTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGDETRQEEPAVAGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLAFDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMSMLLVGNKCDMPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFAT 729
            E+D     +L G+ GVGK+ L  R+ D  +      T GVDF I+T++                    GKT                      +K+ ++DT+G+  +R + S+Y      ++ VYD++   + N ++++ S+    D+ A +    ++ LLVGNKCD+  SQ+ V  +TG+  A E G+PF+E SAK+ TNV EAFM  T
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQ------------------DGKT----------------------IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLSEI---DRYANE---NVNKLLVGNKCDLT-SQKVVSYETGKAFADEIGIPFLETSAKSSTNVEEAFMAMT 166
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig942.17468.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Divergent8.770e-27385.20RAB-like GTPase n=1 Tax=Ectocarpus siliculosus Tax... [more]
Uncharacterized1.580e-24880.83protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized2.230e-2230.26protein n=6 Tax=Prunus TaxID=3754 RepID=M5X0Z8_PRU... [more]
RAB2.020e-2130.92family n=24 Tax=Chromadorea TaxID=119089 RepID=Q9U... [more]
ras-related1.210e-2028.70protein RABE1a-like n=1 Tax=Cynara cardunculus var... [more]
Hypothetical1.410e-2028.64protein n=1 Tax=Amphora coffeiformis TaxID=265554 ... [more]
Ras-related1.870e-2029.55protein Rab-8A n=1 Tax=Anthurium amnicola TaxID=16... [more]
GTP-binding2.820e-2029.76protein ypt2 n=2 Tax=Endocarpon pusillum TaxID=364... [more]
Ras-related3.380e-2028.77protein Rab-8A n=2 Tax=Sordariales TaxID=5139 RepI... [more]
Putative4.150e-2030.95small GTPase superfamily n=7 Tax=asterids TaxID=71... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig942contigE_fasciculatus_S2_contig942:17557..23283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score794.3
Seed ortholog evalue3.6e-227
Seed eggNOG ortholog2880.D8LK97
Model size3474
KEGG koko:K07874
KEGG Pathwayko05134,map05134
Hectar predicted targeting categorymitochondrion
Exons6
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0084@1,KOG0084@2759
Ec32 ortholog descriptiondivergent RAB-like GTPase
Ec32 orthologEc-16_002590.1
Cds size1626
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig942.17468.1prot_E_fasciculatus_S2_contig942.17468.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig942 17557..21435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842591.5878909-CDS-E_fasciculatus_S2_contig942:17556..180571696842591.5878909-CDS-E_fasciculatus_S2_contig942:17556..18057Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig942 17557..18057 +
1696842591.6018455-CDS-E_fasciculatus_S2_contig942:18395..185151696842591.6018455-CDS-E_fasciculatus_S2_contig942:18395..18515Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig942 18396..18515 +
1696842591.615637-CDS-E_fasciculatus_S2_contig942:18884..191001696842591.615637-CDS-E_fasciculatus_S2_contig942:18884..19100Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig942 18885..19100 +
1696842591.6287766-CDS-E_fasciculatus_S2_contig942:19752..202311696842591.6287766-CDS-E_fasciculatus_S2_contig942:19752..20231Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig942 19753..20231 +
1696842591.6383314-CDS-E_fasciculatus_S2_contig942:20620..208491696842591.6383314-CDS-E_fasciculatus_S2_contig942:20620..20849Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig942 20621..20849 +
1696842591.6512756-CDS-E_fasciculatus_S2_contig942:21354..214351696842591.6512756-CDS-E_fasciculatus_S2_contig942:21354..21435Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig942 21355..21435 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842591.6619308-UTR-E_fasciculatus_S2_contig942:21435..232831696842591.6619308-UTR-E_fasciculatus_S2_contig942:21435..23283Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig942 21436..23283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig942.17468.1

>prot_E_fasciculatus_S2_contig942.17468.1 ID=prot_E_fasciculatus_S2_contig942.17468.1|Name=mRNA_E_fasciculatus_S2_contig942.17468.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=542bp
MGRSCCRRVLDALCPCFRRYRLGSSASVSGASGEHDMSLNFILHGECGVG
KTSLRNRWVDGIFTGDVAPTFGVDFNIKTLDLVQEEGEDGDETRQEEPAV
AGKTLPSGGRGKGGSTTKQAPCADLQVKINVYDTSGKPGYREVNSTYLLA
FDAVLFVYDISSVSTLNELRRYFSDPEHRDKLAAKKKAGMSMLLVGNKCD
MPLSQRQVGSQTGQDTAAEFGMPFVEVSAKTGTNVREAFMFATTRAVGEH
LARTRLKQSAGRGGGATVKKTMQKVPGLQRALRTRASVLDVFKGLTGRRR
YPQKAQSVVVLPAPSPTAGNTTTAATSPTSGGGGGGGGGSAAERPQKHLP
SSGRRGGRGGLGQGVPARAWALRAAAPPHRRHLSRAKSFSPRGWAATAAA
SRLQQQRRPESPVARSGTGDAATSSLLERPELSPVEVERGSEGAAFPKAG
ASTATTAAEDEESVLAYGRRSSGTSPERTVSSSGGGGVSVGAAATAAATE
ESASKQLREASSFWLDKWGIKAAKTDATRERHSKKSRESHP*
back to top

mRNA from alignment at E_fasciculatus_S2_contig942:17557..23283+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig942.17468.1 ID=mRNA_E_fasciculatus_S2_contig942.17468.1|Name=mRNA_E_fasciculatus_S2_contig942.17468.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5727bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig942:17557..23283+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGCGGAGCTGCTGCAGACGCGTACTCGACGCTCTGTGCCCTTGCTT
CCGTCGATACCGCTTGGGATCGTCGGCGTCGGTGAGTGGCGCTTCGGGCG
AGCACGACATGAGCCTGAACTTCATACTGCACGGGGAGTGCGGCGTAGGG
AAGACGAGCCTCAGGAACCGGTGGGTCGACGGCATCTTCACGGGAGACGT
TGCACCCACGTTTGGCGTAGACTTCAACATAAAAACCCTCGACTTGGTGC
AAGAAGAAGGCGAAGACGGCGACGAGACGCGACAGGAAGAGCCTGCCGTC
GCAGGCAAGACCTTACCGAGTGGAGGACGAGGAAAAGGTGGGTCCACGAC
CAAGCAGGCACCGTGCGCGGATCTGCAGGTGAAGATCAACGTGTACGACA
CGAGCGGCAAGCCTGGCTATAGAGAAGTTAACAGCACGTACCTGCTGGCC
TTCGACGCGGTGCTCTTCGTCTACGACATTTCCTCGGTGTCTACACTCAA
CGTAAGACTGGTCGCCGGAGCGACGTTCGAAAGACACGAACAAGACTGGC
ATAGCTGCATGTCTTACGACGTGTAGCCGAGGCAGATCTCATATGTACAA
GTAGTCGCATGCGAAGCATCGCAACGAAGCATCGCAACGAAGCATCGCAA
CGAAGCATCGCAACAACCTGCTGCTGCTTACTAACGCCGCGCGCACGCAA
CGTCAACAAAACACGCCGGCGCTGGGTATAAACAACGAACAAATATACAG
CAGTAGTGCAGACTATTTTATAGCCCAATCCCTACACGTGGAGTCAACAT
GGACTCGCTGGTTGCCTTTTCGTCTTCGACACCGGGCAGGAACTGCGCCG
ATATTTCAGCGACCCGGAGCACCGTGACAAGCTTGCGGCGAAGAAGAAAG
CAGGCATGTCAATGCTATTGGTGGGGAACAAGTGCGACATGCCGCTATCG
CAACGACAGGTGAGAGGGTAGGCTACAGTAAGGGGGGAATGGGGATTCTG
TGCAGGCTTTTCTTGGATGGATGCCTTCTGTTGTGCCCCGTACATTGCAG
TCTTCCGTGGAGTAGGTCGTCAAAGAGTAGTTTAACCAAGCCTATTATGT
CGATCCCCATGGCAATTCGAACGTTCGTAGACGAGACCTCCGTGAGACCC
ACCACCCCGAAATCTGTCCATGCATCGTGTTGTCTTCATCCAAACATCAG
ATTGTCTCTGGTCTACGTTCGCAACATAATCCCCCCCACACCTCGCATGT
CCAACTATCCCTCAACACACGCCTACTCATGCTCCTTCGCGTTTGGTGTT
CGCCTTCGTGTGTGGGGGGGGGAAACAGGTCGGGTCTCAGACAGGGCAAG
ACACTGCGGCAGAGTTCGGCATGCCCTTCGTAGAGGTCAGCGCCAAGACC
GGGACCAACGTCAGAGAGGCCTTTATGTTCGCCACGACTCGAGCCGTCGG
GGAGCACCTCGCTCGCACCCGGCTGAAGCAATCGGCGGGCAGGGGGGGAG
GGGCGACGGTGAAGAAGACCATGCAGAAGGTTCCCGGTCTTCAGGTGTAG
AGGGAACCAAGACACACATTTTGCAGCAGTTGCTAATGATGTTCTGGCCG
TTTTCCTCCAGTTGCTACACAAATTGTCTATTCAGACGTATGAGTGCAGC
AGTTGCTTCTGGCCGTTCCCTTCACAAGGTTTTCTATTCATACGCATGAC
TGCCCAGCGCGCACGCTCGGTATGACCTGGAATTTCGAGAGCAGGGCTTG
CCTCTCTTTCCTGCCCCCTCGTCGCCTCGGCGAAGGCTTAAGAACCCGTA
ACCACCTTTTAAAGATCATTTTCGTCCCCGCGCATTCACACCAAGCTATC
TACACCTATGTTTTTCGAGGGCAGGGTGGGCGTCTCTTTGCCATTGGCTT
CAAGGGATCTGGCAAGGTTTGGCGAGGGTGCGTCCCACACTATGGCATGA
TGTCGGGGGATACATTGAGCGACAACTTAAACATTTGGTACATGTTTTCT
TAAGACTCGCCGAGGGCGACGAGCGGCAGGCAGCAGCAACTGCAAAGCCA
CGATGGCTAAACACACAGTTTCGTGGCGCCTCGCAATGGAACCCAACGAA
CGGCGAAACTTGACCATCCTCACACCAGACACAACTGCCCCGCCCCCCTG
CGAACCCGTGCTTCCACCACTTTGCGTTGGTGTTGAGAATTAACAGCGCG
CTCTGCGCACGAGGGCTAGCGTGCTGGACGTTTTCAAAGGCCTGACGGGG
CGTCGCCGTTACCCCCAGAAAGCTCAGTCTGTCGTAGTCCTCCCGGCGCC
CTCACCCACCGCCGGCAACACCACCACCGCCGCTACCTCCCCCACCAGCG
GCGGCGGCGGCGGCGGCGGAGGCGGTTCGGCGGCAGAACGGCCGCAGAAG
CACCTCCCGTCCTCCGGCCGACGCGGCGGGAGGGGAGGCCTGGGCCAAGG
GGTGCCCGCCCGAGCGTGGGCACTACGGGCGGCGGCGCCGCCCCACCGCC
GCCACCTGTCGAGAGCCAAGTCTTTTTCGCCCCGCGGCTGGGCGGCGACG
GCCGCGGCCTCCCGACTGCAGCAGCAGCGGCGGCCGGAGTCGCCGGTAGC
TCGGAGCGGGACCGGGGACGCGGCGACGTCGAGTTTGCTCGAAAGGCCGG
AGCTGTCGCCTGTGGAAGTGGAGAGGTAAAGTGTGTGTGTTATGCAGCGC
CGATACGAGCGCGGAGTGTCTCGGCGTCCCTTCTCGCTGGCGTGGCATTG
GTTCGGTAACGTCTGTTGTGATGAGGATGCCGCTTTCGAGTTTCGAAGCA
ACGTAGACCCCCCCTCTTTCTATCCGCTCCCCCTCTTTCTGTTCAACGAA
TCCCGACAGTCTGAGACACTCGTGCACATCACGCAACCATGATGTTTACC
CGCTGACTCTACTATTTACTGTGGCCTCTTTTAGTTTTCGATCAGGAAAA
AAAAAAAGGCGGTTAGCGCGGTCAATGTCAAAGGAAGACACGCGCACACA
TCACAACTACGCGCATCAACCATCCTAACATATAACATGCCCTCTTCCTC
CATTTCCGGGGCAGAGGTTCCGAAGGGGCCGCGTTCCCGAAGGCAGGAGC
GTCCACAGCGACTACAGCTGCGGAGGACGAGGAGTCTGTCTTGGCGTACG
GTCGTCGATCCAGCGGGACGTCCCCGGAAAGGACCGTCAGTAGCAGCGGC
GGCGGCGGTGTCTCGGTGGGTGCGGCGGCAACGGCGGCGGCAACCGAAGA
AAGTGCCTCGAAGCAGCTGCGAGAGGCCAGTAGTTTCTGGTTGGTGCGTG
GAGTATCGCCTGGGGGTGGGTCCTTGCTGCCGGTTGGTGCCGCTTGGGAA
CGATGTTGACTGAGTGGGGTGTATTATGTGCTTCTACTGTGGAATTTCAA
CTACTTAGGTTGCATTGGTGCACGTGCGCAGATCGCCCCTACACCGTTGC
GGTGGCCTATCGATTCATGGTTCTCTCGGCGGTGCCTTTGCCACCCCGTA
GACTGAGAAGAACGAGCTGGTCTAGTGCATGTTCCTCTTGACCCATTCGC
CTCACCGCTGGGCTGGAGCTGCGTGCCACGTCGAAGGATGGATGCAGTTG
GTCTAGATGAACACGGCCCCGGAACGCTCCCAGACATCTAGAAACCCAGA
TTCCGATGTCAGGATTCGATGCACGTGGCGCTTTATGGACTTTTGGCGCT
TCATGAACCTACCAAAACTGTCCACATTCACCTCTTAGACTCCGCCGCTA
CCCCCACACCCCCCTTATCTGTCCATGATTTACCGCACCCCCGAGCAGGA
CAAGTGGGGAATCAAGGCCGCAAAGACCGACGCCACAAGGGAAAGGCACT
CGAAGAAATCCAGAGAAAGCCATCCGTAGGCCGCTCGCGGCAGCGGACAG
ATGTTCATACGAAGACTGTCTTGCGGACGCACGGTACGCTAGGCTTGCAG
GAAAAGGGATTTCCTGCCGACTATCCGAGATCAATGCTAGAGAGGAAGAT
TGCCTTCTTTCAGACATTCCAGCTACTTTGTAGCCCCAACAATTGGTTTA
AAGCGGGCTATGAAATCGTTGCAAGTTGTCGTGTATGACTCGAAAGTGTG
CTTGACGCTTCTTGTGCTCCTTGTCTAGAAATCCTCCGACTGTCGCGAGA
CGTACGATGCATCCATCGGTTTTGGTGATGTTGTGCTTAAAAAGAAAGAA
GGAAATTTGTGTTGCATAGACTGTAAGAAGAACCTTACAGGGCTCCTCCT
TGCGACAGGGTTTGCCCATCGTTCCGCGTGTGTGTATGTGTGGTGGCGAC
GAAAACAATTACGTTATTTCCGGGCTCCGTTTCGATACAGAGTATAGGAG
ACATGCGGAGGTCGGGTATGGACACTATAGAGTCATGTGGGCCCTATTTT
CAAGATGTGCACCACAGATTAGATCTGGAGCGGCTTGCAGTCAACATTGG
CGTGAGGGGTTGTTATTTTTTTCGCATTATGAATCGATATTGTGGTGGGA
GCCTTGAACGACGAGACTTATCACGCACCTGCTTGTCGCAACAGCGCAAC
CAGGCGAGCCACGAGAACGTTTGTGTGTGAATGAATCTTTCTGGTTTGGT
GGTGTTTGTAGCTCTCTCTCTCTCTCTCTCTTTCCGTGTGGTAACAGTGT
AGCGCTATTCGTTTCGAAGGCCAAATACATTTTCGCTCGTCGTTTTTTTC
TCGCTTGGGTGGGTGACTGTCGCCTCTTGATGGTCTCTCTTTTTGAGCAA
AACCTTGGTCTCCGTCGACGAGTCCGCTCGAAAGGATGAAAAATCCCCAC
CGGGGTGTCATACGCGGTGGTGACACACGGTGCTGTGCATGAGGGGCGGG
GTATTGGTACCTCTCGTAAAACATGTTCGTGGGGGTATGTCGGCTTCGAG
TTGTTGTGTGTGTATCAATGTGTGTGTGCAGTTTCGGATTAGGCGAGCAA
GGACCGCAGTGAGTGATATTGTTGGTGTTTGTGGTGCAGGCGGTGGGGGT
GTGAACGCAGGGGGGGGCGCAAGGGATGAAGGAAAGGAAGGCGGCAGCAG
TGCGGGAGCATATGCTCCGGACTCTCAACACTAACTCCTAGCTGCTGGCT
TCCGGAGAATTACACGTATCAGTCATTCAAGTAGAGAGAGAGGTAGCAAT
ATCCGGGTAATGATGCTACCCCATCGACTTCACCTGTCCGCTATTAGTAG
TTATTTCTGCAAACAGTCGTGTCGCACAAACCGCCGACTGTTCGTGCTTG
TATATACATATATATATAGCTATCAATGCTTGCAATATCGACTGTACAGT
AATGGTCTCAACGCTTTTTGTTGGGGTTGTGTGATGACAGGCAATACATA
CGTATCATACACTTCGTTATATGGTGTGGGGAAACATGTGATAGTTGTCG
GGGGAAGGTCGCAATTCTACATCCTCTGATACTCCCGACAGGGTGGTGGC
GAGTTGGGAAAGTGTTTGGGCGGCGGTGTTTTCGGATGGTTGGGATACGA
AGTTCGGTAGACAAAATGGTGTTTTCCAGACACCACGAAAATGCGCCGCT
TTCAGTGAGTACTGACGGCCGAGACGTTTTGGTTCTACGGAACGCTGGAC
TCCTGTGTCCCGCGGAACGGGAGCGCATGTAGATCGGAGGGTGAACTAAA
AGATGTCAAGAACAAGGTCTTCACAACACGCACTGCTTTTCTGTGCAATG
CTGCTGCCCCCCCCCCTTCTGTTTGGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig942:17557..23283+

>mRNA_E_fasciculatus_S2_contig942.17468.1 ID=mRNA_E_fasciculatus_S2_contig942.17468.1|Name=mRNA_E_fasciculatus_S2_contig942.17468.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1626bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig942:17557..23283+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGCGGAGCTGCTGCAGACGCGTACTCGACGCTCTGTGCCCTTGCTT
CCGTCGATACCGCTTGGGATCGTCGGCGTCGGTGAGTGGCGCTTCGGGCG
AGCACGACATGAGCCTGAACTTCATACTGCACGGGGAGTGCGGCGTAGGG
AAGACGAGCCTCAGGAACCGGTGGGTCGACGGCATCTTCACGGGAGACGT
TGCACCCACGTTTGGCGTAGACTTCAACATAAAAACCCTCGACTTGGTGC
AAGAAGAAGGCGAAGACGGCGACGAGACGCGACAGGAAGAGCCTGCCGTC
GCAGGCAAGACCTTACCGAGTGGAGGACGAGGAAAAGGTGGGTCCACGAC
CAAGCAGGCACCGTGCGCGGATCTGCAGGTGAAGATCAACGTGTACGACA
CGAGCGGCAAGCCTGGCTATAGAGAAGTTAACAGCACGTACCTGCTGGCC
TTCGACGCGGTGCTCTTCGTCTACGACATTTCCTCGGTGTCTACACTCAA
CGAACTGCGCCGATATTTCAGCGACCCGGAGCACCGTGACAAGCTTGCGG
CGAAGAAGAAAGCAGGCATGTCAATGCTATTGGTGGGGAACAAGTGCGAC
ATGCCGCTATCGCAACGACAGGTCGGGTCTCAGACAGGGCAAGACACTGC
GGCAGAGTTCGGCATGCCCTTCGTAGAGGTCAGCGCCAAGACCGGGACCA
ACGTCAGAGAGGCCTTTATGTTCGCCACGACTCGAGCCGTCGGGGAGCAC
CTCGCTCGCACCCGGCTGAAGCAATCGGCGGGCAGGGGGGGAGGGGCGAC
GGTGAAGAAGACCATGCAGAAGGTTCCCGGTCTTCAGCGCGCTCTGCGCA
CGAGGGCTAGCGTGCTGGACGTTTTCAAAGGCCTGACGGGGCGTCGCCGT
TACCCCCAGAAAGCTCAGTCTGTCGTAGTCCTCCCGGCGCCCTCACCCAC
CGCCGGCAACACCACCACCGCCGCTACCTCCCCCACCAGCGGCGGCGGCG
GCGGCGGCGGAGGCGGTTCGGCGGCAGAACGGCCGCAGAAGCACCTCCCG
TCCTCCGGCCGACGCGGCGGGAGGGGAGGCCTGGGCCAAGGGGTGCCCGC
CCGAGCGTGGGCACTACGGGCGGCGGCGCCGCCCCACCGCCGCCACCTGT
CGAGAGCCAAGTCTTTTTCGCCCCGCGGCTGGGCGGCGACGGCCGCGGCC
TCCCGACTGCAGCAGCAGCGGCGGCCGGAGTCGCCGGTAGCTCGGAGCGG
GACCGGGGACGCGGCGACGTCGAGTTTGCTCGAAAGGCCGGAGCTGTCGC
CTGTGGAAGTGGAGAGAGGTTCCGAAGGGGCCGCGTTCCCGAAGGCAGGA
GCGTCCACAGCGACTACAGCTGCGGAGGACGAGGAGTCTGTCTTGGCGTA
CGGTCGTCGATCCAGCGGGACGTCCCCGGAAAGGACCGTCAGTAGCAGCG
GCGGCGGCGGTGTCTCGGTGGGTGCGGCGGCAACGGCGGCGGCAACCGAA
GAAAGTGCCTCGAAGCAGCTGCGAGAGGCCAGTAGTTTCTGGTTGGACAA
GTGGGGAATCAAGGCCGCAAAGACCGACGCCACAAGGGAAAGGCACTCGA
AGAAATCCAGAGAAAGCCATCCGTAG
back to top