mRNA_E_fasciculatus_S2_contig9419.17466.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9419.17466.1
Unique NamemRNA_E_fasciculatus_S2_contig9419.17466.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9419.17466.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 2.650e-97
Identity = 239/373 (64.08%), Postives = 248/373 (66.49%), Query Frame = 1 
Query:    1 MAKQQPAQQAQLLGDLEKRSDARMEESTASES--NRRSARQTFEDCPLIEIVHFHECLRGELRSLRTNVQTLCRQMRDLHHKTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATVPMSVQLDD---------KEADSAEMTVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESLPAQHLELEVQVQSQFQLLWAVFQSHSTAEDEVIWPALKEKARSSGGKLKLVNHGDGPDTPAAA--VATAAAEEDVPSNGAGAARNEGKASKDNRQGNPSRVKGEATATDAARRAEQREVXXXXXXXXXXXXXXQDGDGGQFGEAMIDEAEYTEEHHEEQRLFEGMEEML 1080
            M KQQP QQA+L GDLEK  D RM ESTA ES  +RRSARQ FEDCPLIEIVHFHECLRGELRSLR NVQTLCRQMRDLHHKT S       XXXXXXXXXXXXXXXXXXXXXXXXXX                        A+ A  T P                                                  ESLPAQHLELEV+VQSQFQLLWAVFQSHSTAEDEVIWPALKEKARSSGGKLKLVNHGD PD PA A   A  AA  DVPSNG GAARNE K SKD +Q +PSRVKGEATATDAARR EQREV         XXXXX+DGDGGQFGEAMIDEAEYTEEHHEEQ LFE M+E+L
Sbjct:    1 MGKQQPVQQAKLPGDLEKHGDGRMGESTAPESKGSRRSARQAFEDCPLIEIVHFHECLRGELRSLRRNVQTLCRQMRDLHHKTQSAVAGAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTANDASATTPGLMSPSSCAAAGPTA-----------------------------------ESLPAQHLELEVRVQSQFQLLWAVFQSHSTAEDEVIWPALKEKARSSGGKLKLVNHGDAPDAPAPAPPAAVTAAAADVPSNGTGAARNECKTSKDKQQDDPSRVKGEATATDAARRVEQREVVASGGRVEGXXXXXRDGDGGQFGEAMIDEAEYTEEHHEEQLLFEDMQEVL 338
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BLAST of mRNA_E_fasciculatus_S2_contig9419.17466.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9Z5_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 1.820e-9
Identity = 67/225 (29.78%), Postives = 80/225 (35.56%), Query Frame = 1 
Query:  121 FEDCPLIEIVHFHECLRGELRSLRTNVQTLCRQMRDLHHKTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATVPMSVQLDDKEADSAEMTVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESLPAQHLELEVQVQSQFQLLWAVFQSHSTAEDEVIWPALKEKARSSGGKLKLVNHGDGPDTPAAAVATAAAEED 795
            ++DCPLIEIVHFHECLRGELRSL  NV+ L    R L                                                 LD  +  S E+                                                            L LE+QVQSQF+LL AVFQ+HSTAEDE IWPALK+KA  +      V  G G D      A+  +E+D
Sbjct:   22 YQDCPLIEIVHFHECLRGELRSLHDNVKRL----RSL-------------------------------------------------LDGTKKISEEV------------------------------------------------------------LSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQKALEAAAAA--VKTGAGSDADGELRASLISEQD 131
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9419.17466.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.650e-9764.08protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Hypothetical1.820e-929.78protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9419contigE_fasciculatus_S2_contig9419:127..3046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score332.8
Seed ortholog evalue2e-88
Seed eggNOG ortholog2880.D7FUX1
Model size1080
KEGG koko:K16276
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG1940@1,KOG1940@2759
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-26_004520.1
Cds size1080
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842591.3593843-CDS-E_fasciculatus_S2_contig9419:126..4861696842591.3593843-CDS-E_fasciculatus_S2_contig9419:126..486Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9419 127..486 -
1696842591.3742878-CDS-E_fasciculatus_S2_contig9419:1051..16111696842591.3742878-CDS-E_fasciculatus_S2_contig9419:1051..1611Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9419 1052..1611 -
1696842591.3853014-CDS-E_fasciculatus_S2_contig9419:2134..21961696842591.3853014-CDS-E_fasciculatus_S2_contig9419:2134..2196Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9419 2135..2196 -
1696842591.4027698-CDS-E_fasciculatus_S2_contig9419:2948..30461696842591.4027698-CDS-E_fasciculatus_S2_contig9419:2948..3046Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9419 2949..3046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9419.17466.1prot_E_fasciculatus_S2_contig9419.17466.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9419 127..3046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9419.17466.1

>prot_E_fasciculatus_S2_contig9419.17466.1 ID=prot_E_fasciculatus_S2_contig9419.17466.1|Name=mRNA_E_fasciculatus_S2_contig9419.17466.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=360bp
MAKQQPAQQAQLLGDLEKRSDARMEESTASESNRRSARQTFEDCPLIEIV
HFHECLRGELRSLRTNVQTLCRQMRDLHHKTASAAAAPSSGQQQQQQQQQ
QQQQQQQQHKHDDEEDRAATVPMSVQLDDKEADSAEMTVPAAAAAAAAAL
TPSTANDASRTTTTTTTTTTTAPGPMSPSSSTAAASTAAAESLPAQHLEL
EVQVQSQFQLLWAVFQSHSTAEDEVIWPALKEKARSSGGKLKLVNHGDGP
DTPAAAVATAAAEEDVPSNGAGAARNEGKASKDNRQGNPSRVKGEATATD
AARRAEQREVVAGGRRVEGGGGGGQDGDGGQFGEAMIDEAEYTEEHHEEQ
RLFEGMEEML
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mRNA from alignment at E_fasciculatus_S2_contig9419:127..3046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9419.17466.1 ID=mRNA_E_fasciculatus_S2_contig9419.17466.1|Name=mRNA_E_fasciculatus_S2_contig9419.17466.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2920bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9419:127..3046- (Ectocarpus fasciculatus EfasUO2)
ATGGCGAAGCAGCAGCCCGCGCAGCAGGCGCAGCTTCTGGGCGACCTAGA
GAAGCGCAGCGATGCAAGAATGGAGGAGTCGACCGCTTCCGAGAGCAAGT
GAGAACCGGGGGGTTTCCTTGACATTCCTGCAACAAACAACAAACAAATT
GAGCTGATTTTTTTCTGTCCTTCGTGATTTTTGCAGAGCCGAGCAGGCTC
CAAAAACCCCGAACCTAAGTGCAGCTCCGGGTTGCTTGAAAGGAGCACGC
GGGGAGCTGAAACCACCTCCACCGCCGCCAATAAAGTAAACACCAGTATG
CTAGGTCGAGGTCGTGCCCTCGCCTTGAAAAAAAACTGTGGGACATGCAT
GTATCGTATGCCAGTGTACCCGGCGGCGTAACCTATTTACAGCAAGCAGT
AGTACTGCGCATGAGTGGCGTTTGTCGCCCACCGCGGACGGTTGGCGGCG
ACTTTCTCCCGCAACATCCTCCGTGTTGTTTGTATGCATACGCATATTTG
TCGCGTTTTGTCTCTCGGATGCATCTACACCCCGGTGCACGTCGTGCTAC
CACTGGAATGATCCATGTGTCCGTGGGACTACTTCCCAATGAATGATCCC
TTCGGATTCTAGTCTGGTGGATCAACACACAATTCATCACTCACTTCACC
AGCCCGCCTCCCATGCATACCGCTTACCCTAGTTATACCTCGAACGGGTA
GTCTTTCTGTGTGTAAATTTGTTTTTCCTAATACCGCTTACCCTAAAAGG
CTCTGGTCGTATACTATTACCACTACACGTTTGCACTGATTGTCGACCTA
ATTTTCTATCCCCTTTTTGTCCAATCGGCGCTTACGCTCAACAACGGCAG
CAGACGATCGGCCAGACAAACTTTCGAGGACTGCCCGCTCATCGAGATCG
TACACTTTCATGGTGAGCCAAGAGAGAGACAGATTTCGACGGCGCGGGAG
GGGGCGCGGGGGGCGGTACATAGACTGCGGCGTTGCATGATTGATTGCGT
GGTGAGCAAAGATGAACGCTGCTGTCGCTTTTGATCCCGTGGCTCACGTA
GTCGAAGAGCTGTGCAAAGAGCCAGTGCACAACCCCTCCGACTACACTAC
GAGAATGGCGATTTGATCCGTCTGAACAAGAGCCGTGGTAGACCGGCGCT
TTCACATGGTTCCGACCAGAAGGTAGTCGGGCGAACCATTGGGGCTGATT
GGCGTCAAACAGGCACACCTGCATTGATGCTCACAGCGCCCTTTGCTAAA
TAATCTATGTAAGGCACCTCTACTGACCACAGCGGCAGCCGTTCCAAAAA
GAGGCGTGACCTACATTATGTAGGTTTTCTTGACCTGGGTTGGCGTTCAT
CCTTCATAACCACGAGCTAAAACGATCACCCTGTTTTTGAAAACCGTGCC
GTTCGATTCGCACAACCCCGACGACCGATGCACAGAGTGCTTGCGCGGGG
AGCTGCGGTCCCTCCGGACGAACGTACAGACGCTGTGCCGCCAGATGCGA
GACCTCCACCACAAAACGGCGTCCGCCGCGGCAGCGCCTTCGTCAGGGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
ACAAACATGACGACGAGGAGGATCGAGCCGCAACGGTGCCGATGTCGGTT
CAGTTAGACGATAAGGAGGCTGATTCGGCCGAGATGACGGTACCGGCGGC
GGCAGCAGCAGCGGCGGCGGCGTTGACCCCCTCCACCGCCAACGATGCCT
CAAGAACAACAACAACAACAACAACAACAACAACAACAGCACCAGGGCCG
ATGTCCCCTTCTTCCTCTACCGCAGCGGCGTCAACGGCGGCGGCGGAGTC
GCTGCCGGCGCAGCACCTGGAGCTGGAGGTGCAGGTGCAGAGCCAGTTTC
AGCTCCTGTGGGCCGTGTTCCAGAGCCACTCCACGGCGGAGGACGAGGTT
ATCTGGCCCGCGCTCAAGGAGAAGGCCCGCTCCAGCGGTGGAAAGGTGAG
GCAGCGGTGGCGGTGTTTGTAGTGTACCACCTCCGTTTTCACCACACGTG
TGTGCTCCATGGTATGTTGTGTGTGTTTTCTGGTGCCGTGTGTGGTGGTG
GTGGTTGGTGTTTGTGCTTGTGGCGTTTTCGAGAGACGTGGCTGGGGATA
GATGTTGCGGCTTTGCGCGTGTTTTCCCCCCGTTTCAGCTGCGCTACATC
ACCAGAACGCCCACTCTCTCGCCTGCAGAAAACGTAGAACCTGTGTATCG
CGTTCAACTCCTCGCCCGAGAAATGTTACTCCTCCTGCGCGTTGCCTCGT
ATCACAGTAGTACTTCCGATTTCGGTAGCCCGGCAAGAGACCAGACAGGA
CATGAAGATCCCGCGCACTACTGTAGAATAACTACTGCTGTACCCTGCTG
AAGGGCACATAATCACTCGGTTCACCGACGCGGAGTAATCATGTTCCCCC
TTGTTCATCATTCCGGTATCATTGCTTCCACATTGGGTATAACCGGCTTC
TCGTCTACACGTTCAAATATAACATTGGCTCTTCGTGTTGTCTTGTCTAT
CCGAAAACAGCTCAAGCTGGTGAACCACGGTGATGGTCCCGACACACCAG
CGGCAGCGGTAGCTACAGCAGCTGCGGAGGAGGATGTCCCGTCCAACGGC
GCCGGGGCCGCAAGAAACGAAGGCAAAGCCTCGAAAGACAACCGGCAGGG
TAACCCTTCTCGCGTGAAGGGAGAGGCCACCGCGACCGATGCTGCTAGAC
GGGCGGAGCAGCGAGAGGTTGTCGCTGGTGGTCGTCGTGTGGAGGGAGGG
GGAGGGGGGGGGCAGGACGGAGATGGGGGGCAGTTCGGGGAAGCCATGAT
CGACGAGGCGGAGTACACGGAAGAGCATCACGAAGAGCAGCGGCTGTTCG
AGGGCATGGAGGAAATGCTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9419:127..3046-

>mRNA_E_fasciculatus_S2_contig9419.17466.1 ID=mRNA_E_fasciculatus_S2_contig9419.17466.1|Name=mRNA_E_fasciculatus_S2_contig9419.17466.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1080bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9419:127..3046- (Ectocarpus fasciculatus EfasUO2)
ATGGCGAAGCAGCAGCCCGCGCAGCAGGCGCAGCTTCTGGGCGACCTAGA
GAAGCGCAGCGATGCAAGAATGGAGGAGTCGACCGCTTCCGAGAGCAACA
GACGATCGGCCAGACAAACTTTCGAGGACTGCCCGCTCATCGAGATCGTA
CACTTTCATGAGTGCTTGCGCGGGGAGCTGCGGTCCCTCCGGACGAACGT
ACAGACGCTGTGCCGCCAGATGCGAGACCTCCACCACAAAACGGCGTCCG
CCGCGGCAGCGCCTTCGTCAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCACAAACATGACGACGAGGAGGATCG
AGCCGCAACGGTGCCGATGTCGGTTCAGTTAGACGATAAGGAGGCTGATT
CGGCCGAGATGACGGTACCGGCGGCGGCAGCAGCAGCGGCGGCGGCGTTG
ACCCCCTCCACCGCCAACGATGCCTCAAGAACAACAACAACAACAACAAC
AACAACAACAACAGCACCAGGGCCGATGTCCCCTTCTTCCTCTACCGCAG
CGGCGTCAACGGCGGCGGCGGAGTCGCTGCCGGCGCAGCACCTGGAGCTG
GAGGTGCAGGTGCAGAGCCAGTTTCAGCTCCTGTGGGCCGTGTTCCAGAG
CCACTCCACGGCGGAGGACGAGGTTATCTGGCCCGCGCTCAAGGAGAAGG
CCCGCTCCAGCGGTGGAAAGCTCAAGCTGGTGAACCACGGTGATGGTCCC
GACACACCAGCGGCAGCGGTAGCTACAGCAGCTGCGGAGGAGGATGTCCC
GTCCAACGGCGCCGGGGCCGCAAGAAACGAAGGCAAAGCCTCGAAAGACA
ACCGGCAGGGTAACCCTTCTCGCGTGAAGGGAGAGGCCACCGCGACCGAT
GCTGCTAGACGGGCGGAGCAGCGAGAGGTTGTCGCTGGTGGTCGTCGTGT
GGAGGGAGGGGGAGGGGGGGGGCAGGACGGAGATGGGGGGCAGTTCGGGG
AAGCCATGATCGACGAGGCGGAGTACACGGAAGAGCATCACGAAGAGCAG
CGGCTGTTCGAGGGCATGGAGGAAATGCTT
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