mRNA_E_fasciculatus_S2_contig9416.17464.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9416.17464.1
Unique NamemRNA_E_fasciculatus_S2_contig9416.17464.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9416.17464.1 vs.
Match: Sulfotransferase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST9_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 6.910e-24
Identity = 65/104 (62.50%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 GDGSQRGGASRVGKGGERGVVNGGGRAMAATPTFDLLRVQRRDD----LGSEYPRLKFLDGEEESG---ASAWPRDGDGEGPFSLRRYESFEAYATEQSASGNA 291
            GDG  RGGA+R  K G+R  VNGGGRAMAA PTF +LRV++RD     LGS  PRL+FL G+   G   A++ P      GPFSLRRYESFEAYATEQSASGNA
Sbjct:  156 GDGGFRGGAARARKSGKREAVNGGGRAMAAIPTFHMLRVRKRDGEGEPLGSAPPRLEFLGGDGGGGGESATSAP------GPFSLRRYESFEAYATEQSASGNA 253
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9416.17464.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Sulfotransferase6.910e-2462.50n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9416contigE_fasciculatus_S2_contig9416:3104..4004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score105.5
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7FST9
Model size296
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.heparan sulfate sulfotransferase activity
EggNOG OGsKOG3704@1,KOG3704@2759
Ec32 ortholog descriptionSulfotransferase
Ec32 orthologEc-09_001620.1
Cds size294
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842591.1518097-CDS-E_fasciculatus_S2_contig9416:3103..33011696842591.1518097-CDS-E_fasciculatus_S2_contig9416:3103..3301Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9416 3104..3301 +
1696842591.1689272-CDS-E_fasciculatus_S2_contig9416:3907..40031696842591.1689272-CDS-E_fasciculatus_S2_contig9416:3907..4003Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9416 3908..4003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9416.17464.1prot_E_fasciculatus_S2_contig9416.17464.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9416 3104..4003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9416.17464.1

>prot_E_fasciculatus_S2_contig9416.17464.1 ID=prot_E_fasciculatus_S2_contig9416.17464.1|Name=mRNA_E_fasciculatus_S2_contig9416.17464.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp
GDGSQRGGASRVGKGGERGVVNGGGRAMAATPTFDLLRVQRRDDLGSEYP
RLKFLDGEEESGASAWPRDGDGEGPFSLRRYESFEAYATEQSASGNAT
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mRNA from alignment at E_fasciculatus_S2_contig9416:3104..4004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9416.17464.1 ID=mRNA_E_fasciculatus_S2_contig9416.17464.1|Name=mRNA_E_fasciculatus_S2_contig9416.17464.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=901bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9416:3104..4004+ (Ectocarpus fasciculatus EfasUO2)
GGGGATGGTAGCCAGAGGGGGGGTGCTTCCCGCGTAGGGAAGGGCGGCGA
GAGGGGAGTGGTCAACGGCGGCGGCAGGGCCATGGCCGCGACCCCGACTT
TCGATCTGTTGAGGGTGCAGAGAAGGGATGACCTGGGGAGCGAATATCCG
CGGCTGAAGTTCCTGGATGGAGAGGAGGAGAGCGGTGCATCAGCATGGGT
GATCCTGCCGAACAGGCGACGCCACGCCTACCGTTTAGACAGCATTTAGT
CCTGTATTCCTAGCCTTTGACCCGAAAAAGCCAGCACGAACTGTGGAACC
CGTCAACAAAATACACGGGAGAATATGAACCCTCATATTGAAAAAGATAG
GACCCGCGTAGGAAACGTCGACGTTTGGCGGGATGGAATGGTGGATGGAT
ATTTCGTAACCCTGCCGCGTTACAACCAATATATCTCTACCCAAGCCCCC
GGGCTGAAATACACTTGTCGTCGGCCTGCCGGGGAGAAGAGGCCACGGTG
GTAAACCGTCGTTCGGTGAGACACTTTCGGTCTCAATCTTTATTATCATT
TTTCTTGAGAAGCTTGCACAACGTTCCGGACCCGTCCTTTTTTGAGACCG
TTGGCGTCGAACGCGGAGTGCGTGGCGTTTGGTTTTGTCGCGAAAAGCAG
CACTCGTACGCAGCACGTGTGCATCGGCGAGATCTTAAATTACGCCCCTT
TTTTTTTGTCAATCTTCCGCCGTGCGTGTGCGCACGCACCATGCTTTCGG
GTCGAAACGCGCGAAACCGAAAAACAACAACAACAACAACAACAACAAAA
CCAGCCCCGGGACGGTGACGGCGAGGGGCCGTTCTCCCTAAGGCGCTACG
AGAGCTTCGAGGCGTACGCGACGGAGCAGTCGGCCAGCGGCAACGCCACC
G
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9416:3104..4004+

>mRNA_E_fasciculatus_S2_contig9416.17464.1 ID=mRNA_E_fasciculatus_S2_contig9416.17464.1|Name=mRNA_E_fasciculatus_S2_contig9416.17464.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9416:3104..4004+ (Ectocarpus fasciculatus EfasUO2)
GGGGATGGTAGCCAGAGGGGGGGTGCTTCCCGCGTAGGGAAGGGCGGCGA
GAGGGGAGTGGTCAACGGCGGCGGCAGGGCCATGGCCGCGACCCCGACTT
TCGATCTGTTGAGGGTGCAGAGAAGGGATGACCTGGGGAGCGAATATCCG
CGGCTGAAGTTCCTGGATGGAGAGGAGGAGAGCGGTGCATCAGCATGGCC
CCGGGACGGTGACGGCGAGGGGCCGTTCTCCCTAAGGCGCTACGAGAGCT
TCGAGGCGTACGCGACGGAGCAGTCGGCCAGCGGCAACGCCACC
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