mRNA_E_fasciculatus_S2_contig9415.17463.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9415.17463.1
Unique NamemRNA_E_fasciculatus_S2_contig9415.17463.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9415.17463.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G359_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 7.900e-17
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 SDTLKLDARRTDARRLADRVDALKRVERSLLNCKRLGDPELLQ 129
            SDTLKLDARRTDARRLADRV+ALKRVERSLLNCKRLGDPELLQ
Sbjct:  591 SDTLKLDARRTDARRLADRVEALKRVERSLLNCKRLGDPELLQ 633
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9415.17463.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.900e-1797.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9415contigE_fasciculatus_S2_contig9415:2067..2199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score81.6
Seed ortholog evalue9.8e-14
Seed eggNOG ortholog2880.D7G359
Preferred nameCFAP46
Model size133
KEGG koko:K18626
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
EggNOG free text desc.cilium movement involved in cell motility
EggNOG OGs2C6EK@1,2QS2Z@2759
Cds size132
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842591.100335-CDS-E_fasciculatus_S2_contig9415:2067..21991696842591.100335-CDS-E_fasciculatus_S2_contig9415:2067..2199Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9415 2068..2199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9415.17463.1prot_E_fasciculatus_S2_contig9415.17463.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9415 2068..2199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9415.17463.1

>prot_E_fasciculatus_S2_contig9415.17463.1 ID=prot_E_fasciculatus_S2_contig9415.17463.1|Name=mRNA_E_fasciculatus_S2_contig9415.17463.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=44bp
SDTLKLDARRTDARRLADRVDALKRVERSLLNCKRLGDPELLQA
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mRNA from alignment at E_fasciculatus_S2_contig9415:2067..2199-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9415.17463.1 ID=mRNA_E_fasciculatus_S2_contig9415.17463.1|Name=mRNA_E_fasciculatus_S2_contig9415.17463.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=133bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9415:2067..2199- (Ectocarpus fasciculatus EfasUO2)
AGCGATACGTTGAAGCTTGACGCGAGGCGGACCGACGCTCGGCGGCTCGC
AGATAGGGTTGATGCCTTGAAGCGGGTCGAGAGATCGTTGCTGAACTGCA
AGCGGCTGGGAGACCCCGAGTTATTGCAGGCAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9415:2067..2199-

>mRNA_E_fasciculatus_S2_contig9415.17463.1 ID=mRNA_E_fasciculatus_S2_contig9415.17463.1|Name=mRNA_E_fasciculatus_S2_contig9415.17463.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=132bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9415:2067..2199- (Ectocarpus fasciculatus EfasUO2)
AGCGATACGTTGAAGCTTGACGCGAGGCGGACCGACGCTCGGCGGCTCGC
AGATAGGGTTGATGCCTTGAAGCGGGTCGAGAGATCGTTGCTGAACTGCA
AGCGGCTGGGAGACCCCGAGTTATTGCAGGCA
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