mRNA_E_fasciculatus_S2_contig9415.17462.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9415.17462.1
Unique NamemRNA_E_fasciculatus_S2_contig9415.17462.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9415.17462.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G359_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 3.680e-73
Identity = 130/179 (72.63%), Postives = 132/179 (73.74%), Query Frame = 1
Query:    1 GCCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLKSPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKACTQDYGASDMTTLPPETPLDGEWDCDQQLGNAF---------------------------------------------MAPLASFLRLKTSVDVEPATAEDKALLLVDQ 402
            GCCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDL+SPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKAC QDYGASDMTTLPPETPLDGEWDCDQQLGN F                                             MAPLASFLRLKTSVDVEPATAED+ALLLVDQ
Sbjct:  635 GCCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLQSPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKACMQDYGASDMTTLPPETPLDGEWDCDQQLGNTFSEGNNQRHYEAGGSDGAGAGNSPEGDVAEARAAALNDVLRPMDRFMAPLASFLRLKTSVDVEPATAEDRALLLVDQ 813          
BLAST of mRNA_E_fasciculatus_S2_contig9415.17462.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8K3_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.260e-25
Identity = 64/142 (45.07%), Postives = 84/142 (59.15%), Query Frame = 1
Query:    4 CCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLKSPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKACTQDYGASDMT---------TLPPETPLDGEWDCDQQLGNAFMAPLASFLRLKTSVDVEPATAEDKALLLVDQ 402
            C  A++  +PLL    RKHVHR F  A  +L++L SPL +LRAQ+HLE AKCEM SD+LAKA+ HV KA   DYG S  T         T  P TP D      +Q  + F+ PL   L LK+++  EP   ED+A++ V+Q
Sbjct:   58 CIFAWNVALPLLEPHLRKHVHRLFQAATALLEELDSPLVQLRAQMHLETAKCEMMSDYLAKASVHVNKALVLDYGESATTPPHEDAGHKTNKPSTP-DPSLTTGRQF-DKFLLPLKQVLDLKSNLYGEPEAVEDQAIIFVEQ 197          
BLAST of mRNA_E_fasciculatus_S2_contig9415.17462.1 vs.
Match: Uncharacterized (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RW37_SAPDV)

HSP 1 Score: 107 bits (267), Expect = 2.070e-24
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 1
Query:    4 CCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLKSPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKACTQDYG-------ASDMTTLPPETPLDGEWDCDQQLGNAFMAPLASFLRLKTSVDVEPATAEDKALLLVDQ 402
            C  A++  +PLL    RKHVHR F+    +L++L SPL  LRAQ+HLE AKCEM  D+LAKA+ HV KA   DYG       +++ T+  P+TP     +   +  + F+ P+   L LK+++  EP   ED+AL+ V+Q
Sbjct:  431 CIYAWNVALPLLEPHLRKHVHRLFTATTSLLEELDSPLVTLRAQMHLETAKCEMKCDYLAKASVHVNKALLLDYGEAATSDESANHTSTKPKTPSATSAERAVRPFDKFLLPMKRVLDLKSNLYGEPDAVEDQALIYVEQ 570          
BLAST of mRNA_E_fasciculatus_S2_contig9415.17462.1 vs.
Match: Aste57867_10079 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ62_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.080e-24
Identity = 62/148 (41.89%), Postives = 83/148 (56.08%), Query Frame = 1
Query:    4 CCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLKSPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKACTQDYGA-----SDMTTLPPETPLDGEWDCDQQLG----------NAFMAPLASFLRLKTSVDVEPATAEDKALLLVDQ 402
            C LA++  +PLL S  RKHVHR F  A  +L+DL+SPL  LRAQ+H E AKCEM+SD+LAKA++HV KA   DYG      S  T      P  G        G          +  + P+   L LK+++  EP   ED+AL++V+Q
Sbjct:  480 CILAWNVAMPLLESHLRKHVHRLFQSATALLEDLESPLVALRAQMHFETAKCEMESDYLAKASTHVNKALALDYGGPKPAESKGTDAHTTKPNGGAIAAKPSAGIVDDVSVRPLDKLLVPMKRTLDLKSNLYGEPDAIEDQALIIVEQ 627          
BLAST of mRNA_E_fasciculatus_S2_contig9415.17462.1 vs.
Match: Uncharacterized (protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIG9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 9.780e-24
Identity = 60/140 (42.86%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    4 CCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLKSPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKACTQDYGASD------MTTLPPETPLDGEWD-CDQQLGNAFMAPLASFLRLKTSVDVEPATAEDKALLLVDQ 402
            C  A++  +PLL    RKHVHR F  A  +L++L SPL  LRAQ+HLE AKCEM  D+LAKA  HV KA   DYG S            P+TP   E      +  + F+ P+   L LK+++  EP   ED+AL+ V+Q
Sbjct:  431 CIYAWNVALPLLEPHLRKHVHRLFQTATSLLEELDSPLVMLRAQMHLETAKCEMKCDYLAKACVHVNKAIMLDYGESGPGSDEHAAATKPKTPASAEAPRLAARPFDKFLLPMKRVLDLKSNLYGEPDAVEDQALIYVEQ 570          
BLAST of mRNA_E_fasciculatus_S2_contig9415.17462.1 vs.
Match: FHA (domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJC2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 9.800e-24
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 1
Query:    4 CCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLKSPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKACTQDYGASDMTTLPPETPLDG-------------------------EWDCDQQLGNAFMAPLASFLRLKTSVDVEPATAEDKALLLVDQ 402
            C  A++  +PL+ S  RKHVHR F  A  +L++L+SPL  LRAQ+HLE AKCEMD D+LAKAA HV KA   DYG +   +   +T  D                          + D  Q+  +  + P+   L LK+++  EP   ED+AL++++Q
Sbjct:  479 CLFAWNVALPLVESHLRKHVHRLFQSATSLLEELESPLVALRAQMHLETAKCEMDCDYLAKAAIHVNKALQLDYGGTAAASTSAKTGYDAGGKPTSPDGQAKGKAQGHGHSSAPPQHDTTQRPLDKHLLPMKRVLDLKSNLYGEPDAIEDQALIIIEQ 636          
BLAST of mRNA_E_fasciculatus_S2_contig9415.17462.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLF9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.320e-23
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 1
Query:  163 MDSDFLAKAASHVEKACTQDYGASDMTTLPPETPLDGEWDCDQQLGNAF 309
            MDSDFLAKAASHVEKAC QDYGASDMTTL PETPLDGEWDCDQQLGN F
Sbjct:    1 MDSDFLAKAASHVEKACMQDYGASDMTTLTPETPLDGEWDCDQQLGNTF 49          
BLAST of mRNA_E_fasciculatus_S2_contig9415.17462.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z4F4_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 2.210e-20
Identity = 57/133 (42.86%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   10 LAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLKSPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKACTQDYGAS--DMTTLPPETPLDGEWDCDQQLGNAFMAPLASFLRLKTSVDVEPATAEDKALLLVDQ 402
            L ++TG+PLL    R++V R F+ AA+ L+ + SPL RLR QLHLE +KC+   D L KA+  V KA   DY AS  ++     E PLD            ++ PL + L L+TS+ +EP TAE++A+LLVD+
Sbjct:   80 LVWNTGLPLLQPDWRRNVKRAFNSAARALEVICSPLHRLRVQLHLEASKCDAAEDSLIKASQEVAKALALDYVASPEEVERFQLERPLD-----------RYLEPLHTSLALRTSLTLEPGTAEEEAMLLVDR 201          
BLAST of mRNA_E_fasciculatus_S2_contig9415.17462.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYU5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.470e-19
Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 1
Query:    1 GCCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLKSPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKACTQDYG-------ASDMTTLPPETP-------LDGEW---------DCDQQLGNAFMAPLASFLRLKTSVDVEPATAEDKALLLVDQ 402
            G  L ++  + LL    R+H H   +L A+IL  L+SPL RLR Q+HLEVA+CE+ +DF+A A +H++KA   DYG       + D + + PET        LD E          D ++ + + ++ PL   L L++S+  EP + ++KALL V+Q
Sbjct:  102 GAVLIWNMAIGLLRPHLRRHCHAGLTLVAEILDMLESPLLRLRMQVHLEVARCELAADFVANANTHIQKAMALDYGDISEAQLSVDESEVQPETDPAAAVLQLDAEHTVAEREAAEDAERDM-DRYLRPLKMKLELRSSIYEEPESLDEKALLAVEQ 257          
BLAST of mRNA_E_fasciculatus_S2_contig9415.17462.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V9I7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.260e-18
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    4 CCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLKSPLARLRAQLHLEVAKCEMDSDFLAKAASHVEKACTQDYGASDMTTLPPETPL 267
            C  A++  +PL+ S  RKHVHR F  A  +L++L+SPL  LRAQ+H E AKCEM+ D+LAKA+ HV KA   DYG +  T  P +T L
Sbjct:  493 CLFAWNVALPLVESHLRKHVHRLFQSATALLEELESPLVALRAQMHFEAAKCEMECDYLAKASVHVNKALQLDYGGT-PTEQPSKTGL 579          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9415.17462.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
Uncharacterized3.680e-7372.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.260e-2545.07protein (Fragment) n=1 Tax=Thraustotheca clavata T... [more]
Uncharacterized2.070e-2441.43protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RW3... [more]
Aste57867_100792.080e-2441.89protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized9.780e-2442.86protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepI... [more]
FHA9.800e-2437.34domain-containing protein n=2 Tax=Aphanomyces inva... [more]
Uncharacterized4.320e-2393.88protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical2.210e-2042.86protein (Fragment) n=1 Tax=Chlamydomonas euryale T... [more]
Hypothetical3.470e-1936.31protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Uncharacterized1.260e-1851.14protein (Fragment) n=1 Tax=Aphanomyces astaci TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9415contigE_fasciculatus_S2_contig9415:35..1485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score246.9
Seed ortholog evalue5.3e-63
Seed eggNOG ortholog2880.D7G359
Preferred nameCFAP46
Model size402
KEGG koko:K18626
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons3
EggNOG free text desc.cilium movement involved in cell motility
EggNOG OGs2C6EK@1,2QS2Z@2759
Cds size402
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842591.050703-CDS-E_fasciculatus_S2_contig9415:34..1311696842591.050703-CDS-E_fasciculatus_S2_contig9415:34..131Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9415 35..131 -
1696842591.0641642-CDS-E_fasciculatus_S2_contig9415:973..11311696842591.0641642-CDS-E_fasciculatus_S2_contig9415:973..1131Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9415 974..1131 -
1696842591.0737085-CDS-E_fasciculatus_S2_contig9415:1338..14851696842591.0737085-CDS-E_fasciculatus_S2_contig9415:1338..1485Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9415 1339..1485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9415.17462.1prot_E_fasciculatus_S2_contig9415.17462.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9415 35..1485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9415.17462.1

>prot_E_fasciculatus_S2_contig9415.17462.1 ID=prot_E_fasciculatus_S2_contig9415.17462.1|Name=mRNA_E_fasciculatus_S2_contig9415.17462.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=134bp
GCCLAFSTGVPLLGSRHRKHVHRCFSLAAQILQDLKSPLARLRAQLHLEV
AKCEMDSDFLAKAASHVEKACTQDYGASDMTTLPPETPLDGEWDCDQQLG
NAFMAPLASFLRLKTSVDVEPATAEDKALLLVDQ
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mRNA from alignment at E_fasciculatus_S2_contig9415:35..1485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9415.17462.1 ID=mRNA_E_fasciculatus_S2_contig9415.17462.1|Name=mRNA_E_fasciculatus_S2_contig9415.17462.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1451bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9415:35..1485- (Ectocarpus fasciculatus EfasUO2)
GGCTGCTGCCTGGCATTTTCCACCGGTGTCCCCCTCCTGGGTAGTCGGCA CCGGAAACACGTCCACCGCTGCTTCTCTCTCGCGGCCCAGATCCTTCAGG ACCTCAAGTCTCCCCTCGCAAGGCTTCGGGCGCAACTCCATTTGGAGGTG AGCACAATGATCGTAGCGCCCTATGAGGACACTTACCGTACTGTTCGGTT TACCTGTTGGCATATGACAACTTTTCATGTGGGCTAGAGGACGAAGCTCA CGCACGGGTCCACGAAGGCCGCTGGACACCAATTCGCAGTGATAACGTGA TGATCGGTGCGATTCAGACTGATGTCGTATGACAAAATTGCGCTGACCGA CCAGGTGGCGAAGTGCGAGATGGACTCGGACTTCCTAGCGAAGGCAGCAT CACACGTGGAAAAGGCCTGCACGCAGGACTACGGCGCCTCCGACATGACC ACTCTACCGCCGGAGACCCCTCTGGATGGAGAATGGGACTGCGACCAGCA GCTCGGCAACGCGTTCTCGGAAGGGAACAACCAGCGGCATGACGAAGCAG GGGGCTCTGATGGGGCGGGGGCGATTGCGGGGGATCATCCAGACGGTGAT GTTGCAGCGGCAAGGGCGGAAGCGCTCAACGACGTCCTGCGGCCCATGGA TAGGTACGCTGTTGTTGGTACGGAAGACGTTCCATCTCAAGTACCGTGGT TTAAGCCGTTGTGGGCAGCGGTCGTAGCCTGGGCGACAAGGGCACGTAGG GGCTATTACCTTACTCCGGCTTTGTCAGCTTGCTACTTGTCCAATGGATT ACTTGACTCCGCGGGATCCCTTGCTGACCTGTCAGCGATTGAACAATAAT TCCACCAGGTTTGCCTCCCCCGCGGAGTACGCCAGGTCCCCAAGTGCACC GGCCCACTCTGCCCTTCTCCACCGTTCGTACCTCCTTGAGAACGATGGAT TGTGCTTAAGTTATATGTGGCCTGAACCGACTGGCGCCAAAATTGTGTAC CCAGGTTCATGTTGTGGTTGTCTTCACATTAACAAGGCCATTCCGGTCTC TCTCTACCCAGTACCTTCTTCGGTCCGTACTAGTCTATCATTTGACGCGG TCGATGCCCCTGGTCACAGGTTAACTTACCCAAAAATACGAGAAATACGA AGATTGTATTAAGCCGTCGCGGAAACCCTTTCCGAGATGAGGACGGACAT GCGGTGTCTGGTTCACGAATGTGGGTGAAACCTACGTCAGTCTGGGTCCT TCGGGATTGAAGCGCTGCTGCTCCTCGACTGCTACTCCTATTGCTACTGC CACCCCTCGTCTTGATGATTCCTCTCAATTCCCTATGCCGTTCTTGTACG CAAGGTTCATGGCCCCCCTCGCCTCATTCCTACGTCTGAAAACGAGTGTC GACGTGGAGCCCGCAACGGCGGAGGACAAGGCCCTCCTACTCGTTGACCA G
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9415:35..1485-

>mRNA_E_fasciculatus_S2_contig9415.17462.1 ID=mRNA_E_fasciculatus_S2_contig9415.17462.1|Name=mRNA_E_fasciculatus_S2_contig9415.17462.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=402bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9415:35..1485- (Ectocarpus fasciculatus EfasUO2)
GGCTGCTGCCTGGCATTTTCCACCGGTGTCCCCCTCCTGGGTAGTCGGCA
CCGGAAACACGTCCACCGCTGCTTCTCTCTCGCGGCCCAGATCCTTCAGG
ACCTCAAGTCTCCCCTCGCAAGGCTTCGGGCGCAACTCCATTTGGAGGTG
GCGAAGTGCGAGATGGACTCGGACTTCCTAGCGAAGGCAGCATCACACGT
GGAAAAGGCCTGCACGCAGGACTACGGCGCCTCCGACATGACCACTCTAC
CGCCGGAGACCCCTCTGGATGGAGAATGGGACTGCGACCAGCAGCTCGGC
AACGCGTTCATGGCCCCCCTCGCCTCATTCCTACGTCTGAAAACGAGTGT
CGACGTGGAGCCCGCAACGGCGGAGGACAAGGCCCTCCTACTCGTTGACC
AG
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