mRNA_E_fasciculatus_S2_contig9409.17454.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9409.17454.1
Unique NamemRNA_E_fasciculatus_S2_contig9409.17454.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9409.17454.1 vs.
Match: JAB_MPN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J0_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 1.890e-69
Identity = 137/170 (80.59%), Postives = 147/170 (86.47%), Query Frame = 3 
Query:    3 GDVAQPAGKLGAATLDAIVAIARDPPLVMSDEALEVLKGVTGGGSGEGSDGYGPKMDRVVESVTSLGRYYSGMSGRASLSNGAKTGVPTLAKLAGSLAQTVQHMELDPSEADEFIQDACSFLLACFRETDVRIANQQR--GVGKKRKERGGAG----SAASPRRRSRRNP 494
            GDV Q AGKLGAATLD I+AIA DPPL+MS+EALE+LKG TGGGSGEG +GYGPKMDR+VESVTSLGRYY+G+SGRASLSNGAK G+PTLAKLAGSLAQTVQHMELDPSEADEFI DAC FLLACFRETDVRIANQQR  GVGKKR           S A+PRRRSRRNP
Sbjct: 1188 GDVTQQAGKLGAATLDGIIAIASDPPLIMSEEALEILKGATGGGSGEGFEGYGPKMDRIVESVTSLGRYYAGVSGRASLSNGAKAGMPTLAKLAGSLAQTVQHMELDPSEADEFIHDACFFLLACFRETDVRIANQQRRVGVGKKRXXXXXXXXXXXSVANPRRRSRRNP 1357
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BLAST of mRNA_E_fasciculatus_S2_contig9409.17454.1 vs.
Match: JAB_MPN (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z4_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.560e-42
Identity = 89/105 (84.76%), Postives = 99/105 (94.29%), Query Frame = 3 
Query:    3 GDVAQPAGKLGAATLDAIVAIARDPPLVMSDEALEVLKGVTGGGSGEGSDGYGPKMDRVVESVTSLGRYYSGMSGRASLSNGAKTGVPTLAKLAGSLAQTVQHME 317
            GDV Q AGKLGAATLDAI+AI+RDPPL+MS+EALEVLKG TGGGSGEG +GY PKMDR+VESVTSLGRYY+G+SGRASLS+GAK G+PTLAKLAGSLAQTVQHME
Sbjct: 1089 GDVTQQAGKLGAATLDAIIAISRDPPLIMSEEALEVLKGATGGGSGEGVEGYRPKMDRIVESVTSLGRYYAGVSGRASLSHGAKAGMPTLAKLAGSLAQTVQHME 1193
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9409.17454.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
JAB_MPN1.890e-6980.59domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
JAB_MPN1.560e-4284.76domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9409contigE_fasciculatus_S2_contig9409:1246..4517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score131.7
Seed ortholog evalue3e-28
Seed eggNOG ortholog2880.D7G2Z4
Model size1551
KEGG koko:K11865
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.metallopeptidase activity
EggNOG OGsCOG1310@1,KOG1555@2759
Cds size477
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9409.17454.1prot_E_fasciculatus_S2_contig9409.17454.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9409 2234..4431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842590.2827833-UTR-E_fasciculatus_S2_contig9409:1245..22331696842590.2827833-UTR-E_fasciculatus_S2_contig9409:1245..2233Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9409 1246..2233 -
1696842590.337121-UTR-E_fasciculatus_S2_contig9409:4431..45171696842590.337121-UTR-E_fasciculatus_S2_contig9409:4431..4517Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9409 4432..4517 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842590.29435-CDS-E_fasciculatus_S2_contig9409:2233..23021696842590.29435-CDS-E_fasciculatus_S2_contig9409:2233..2302Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9409 2234..2302 -
1696842590.3056045-CDS-E_fasciculatus_S2_contig9409:2392..25691696842590.3056045-CDS-E_fasciculatus_S2_contig9409:2392..2569Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9409 2393..2569 -
1696842590.317218-CDS-E_fasciculatus_S2_contig9409:3518..36301696842590.317218-CDS-E_fasciculatus_S2_contig9409:3518..3630Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9409 3519..3630 -
1696842590.327327-CDS-E_fasciculatus_S2_contig9409:4312..44311696842590.327327-CDS-E_fasciculatus_S2_contig9409:4312..4431Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9409 4313..4431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9409.17454.1

>prot_E_fasciculatus_S2_contig9409.17454.1 ID=prot_E_fasciculatus_S2_contig9409.17454.1|Name=mRNA_E_fasciculatus_S2_contig9409.17454.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=159bp
MSDEALEVLKGVTGGGSGEGSDGYGPKMDRVVESVTSLGRYYSGMSGRAS
LSNGAKTGVPTLAKLAGSLAQTVQHMELDPSEADEFIQDACSFLLACFRE
TDVRIANQQRGVGKKRKERGGAGSAASPRRRSRRNPHTRNVVEACCFPLR
SKGVVSGC*
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mRNA from alignment at E_fasciculatus_S2_contig9409:1246..4517-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9409.17454.1 ID=mRNA_E_fasciculatus_S2_contig9409.17454.1|Name=mRNA_E_fasciculatus_S2_contig9409.17454.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3272bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9409:1246..4517- (Ectocarpus fasciculatus EfasUO2)
GCGGCGATGTCGCGCAGCCGGCTGGGAAATTGGGAGCCGCTACCCTTGAC
GCGATAGTCGCCATCGCCAGAGACCCGCCTTTGGTAATGTCCGACGAAGC
GCTGGAGGTGTTGAAGGGAGTTACCGGCGGCGGAAGTGGGGAGGGGTCCG
ACGGGTACGGGCCGAAGATGGACCGCGTCGTGGAGTCGGTGACGAGCTTG
GGCAGGTGGGAAGTGATCACAGCGTAGGGCCTCGGGTGAAGAGGATTGTC
GTTACTCTTTGCTTGCGCTCCACTTGTCGTGTGCTTGTTTGGAACATGTG
CGGGTCGAGAGCTTGCTACCAGCCTTTACCTCGAATATTACCAGGCATAC
TGTGGTGGGTTGCATATTGTGGTGTTTCCCCAAAAGAGAGCGGCGAATTC
CTTCTGCCACCGCACCTCCAGACCCCGTGGTACGAGTCCACGGCACGCTC
GCCGTTGGGAAACTATGCAACATGGCACAAAACAGCAACACCAGCCGCTC
TTGGACTGCGACCGTAGCCACTGCTGTGCTGTCCGGTCTAGCAAGCAGCA
AGCGAGGGTTCACTCCTCTGCCTGCGAGGCTTTTGTTTCTGCCCCCCGCA
AGCGATAGCTAATCTTATTGCCCCTGTGCCTCCCTCTGCTGTGGCTGTAC
TGGGGTATAGGAAGAGGGTTGAAGAAGCGGGAAGTGAAATCGATAGGGTA
GAGAAGCTAGGGGAAACGTCTTGAGGTTGGCACAGCAGTGCGAACGAACG
ATTGGCCATCGGTGATCGGTCCTGTGGGAACAACGCTCCGGCCTCTCGAG
GACGCGTGGTCAATGGTGTAACGTAACCGCCAAGGCGTGCGAAACATGAG
AGTACCCCCCCCCCCCCCCTGTATTTTTGTCATCCAGGTACTACTCGGGA
ATGTCGGGCAGGGCATCCCTCTCCAATGGCGCCAAGACAGGTGTGCCCAC
CTTGGCAAAGCTCGCCGGATCACTTGCGCAGACGGTGCAACACATGGAGG
TATGGTATGACCAATCTCGGTGCTTGCATGACAGACGGAAGGCACTATTG
CCTGATGGAGTTTTTCTTTTTTTCGGACGCGCAGTGCTCCGAAGGTCCGA
GCACAAGACGTCACGCTGAAATTTTTGCTGACCCCAACTTGTTGTTGGTG
TTGGTGTTGTTGTCGTCACATCTAAAACCGTTCCGATCTCTCTGCGTAGT
ACCTCTTGCTTATATTTAAAGGTATGCCAACATTCACTCAAAACGAACGA
TTGTGTGCGACATTCCCTGCTATCCTATTCGCGAGAAAAACGCGCATATC
CGACATATCTAGGCATTTCGAATTATGTTATTGTTACGGGCAAGTTTATT
CTTCTGCGTTGCCTTTGTTGTTCTAAAGTAGTTCGATCGATCTTGTTGAG
TGCCATCGCAACACCCAAAATTTGATCCCGGAGGTGTCTCTAGCATGCAC
CCTAGGCATCGAGCAAAGGTGTGTCACTACACGCCCCTCTGCCTGTATTC
CAGTATGTGACTATGTACCATGCCGTCACTGTCCGATAACGTTCCCCTAC
CCTTTCTCGGAGACCCTGACTCTTCACCACGCCCCCGATCCAATAGTTCA
AAATCTCCTCCCTCCCCACACACACACAAGCGCCTGGTCCGGAGAGAACC
CGGCGTGCTCGGTCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACG
ACTACGGCATGCATGATACTGAGTACACCCCCCCACATATAAAGGAAGAT
GACCAACCAGCCCCTGGTTCATCCCTGTCAGACCTAGCCTGGGCCGGCGA
CAACCCGGCACATCGCTCCGTCGCGAGATTGCAGGGATGGGAACCCAATG
GCCTACCGACACATTCGTTCAAATGAGTACACCCCGCACCAACTTTAAAT
ATGCCCCCCTGCCCCCCCCCCCCCCCCCTCCATGTGGTTTCTCGGCAGTT
GGACCCCTCCGAGGCAGACGAGTTTATCCAGGACGCGTGCTCCTTCCTGC
TGGCGTGTTTCCGAGAGACGGACGTGAGGATCGCCAACCAGCAGAGGGGT
GTCGGGAAAAAGCGCAAGGAGCGCGGGGGGGCGGGGTCTGCGGCGAGCCC
CCGCCGCCGGTCCAGAAGGAACCCCGCTGAGGGCATAAATAGCTGATGTG
ATGCGTCGATCATGTATGGCAGCTAAAGGCCTTTGGGCTGGCGACGCCAG
ATTAGATGGGAAGAGCACACGCGTAACGTTGTAGAAGCATGTTGTTTTCC
CTTGAGGAGTAAAGGAGTCGTTTCTGGATGTTGAAGACGAAGAGTCAAGC
GTCTGGGGGATGGGGAAGTATGGAGGCTTTCTTTTTTCTCGCCAGCCAAA
TGCCCGAGTGCTGTTTGGAGATTTTCTCGGAGATGCTTTTCACAGACCAT
GGTGGAAGTGAAGTGAACAGGCTCGACTACAGTACAATAATAGTAGTATT
CCTGGGTGTGTTTGTTCTTTGTAAAGGCTCTAGGCCATACTGAAGGAACC
GCCCTTCAGAACGGAGGGAGGGGGGGCTGTCGAGAATGGAGAGGAATATA
CGAGACGTCTTTGCAGCGCTTTAGAAAGTGGGTATTGTATCCTGTTTAAG
TCTAGGTACCTGTTCGGTGTTTTAGAGTCCGGTAGTCATAAGAGCCGGGC
AGTTTACTTTCCGTCAGCGGGTGGCGGGCCTATCGTTGGGGTTGGGAAGT
CGGCGTAAAATGTTGTCAGGGAACAGAACCGTTGTAGTTTTGTCAATCTT
TCTTGCGTGGACCATCCGCGTCGCACACTTGCACGAACGTGAGAATGTCC
GATTTACCAATGCAGGATGCCCAGTCGAGCCTAAATACGTGTCACCATGT
ATAAAACCCTGTGGCGTTCACCAGGTAGACTATGTGTATCACTGTTTCGG
CAAGCGGCACTTACAACTTCGGGTGGGGCATGCTCTCTTGTTGAAGGAAT
TGTTGAAGGAAGAAGATAAGACAACGCGAATGTGTCGAGTAGCTCGCCAC
GCTCTCGCGCAGCAGTAACGGTACGATAGGGACAGTAGGGATCAAGCGTC
CCAGGCACGAGACACACGAGCAACTGTAAAATTTGGGTAATTAATGATGA
ATTTCGAATTTCTGGATATATATATTTTTTGTTAGGGGTCTTTCTCGAAA
GAGAGTGTGACAGTATTGGGTAGCGCTGTCCTGTCATCACGGAAGACGCC
CACGCCAGATCGGCCGGTGTACGGATGTTCGAGGTAAGAGACCCGGAAAA
ACGGGTTTATTGTGAAGACAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9409:1246..4517-

>mRNA_E_fasciculatus_S2_contig9409.17454.1 ID=mRNA_E_fasciculatus_S2_contig9409.17454.1|Name=mRNA_E_fasciculatus_S2_contig9409.17454.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=477bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9409:1246..4517- (Ectocarpus fasciculatus EfasUO2)
ATGTCCGACGAAGCGCTGGAGGTGTTGAAGGGAGTTACCGGCGGCGGAAG
TGGGGAGGGGTCCGACGGGTACGGGCCGAAGATGGACCGCGTCGTGGAGT
CGGTGACGAGCTTGGGCAGGTACTACTCGGGAATGTCGGGCAGGGCATCC
CTCTCCAATGGCGCCAAGACAGGTGTGCCCACCTTGGCAAAGCTCGCCGG
ATCACTTGCGCAGACGGTGCAACACATGGAGTTGGACCCCTCCGAGGCAG
ACGAGTTTATCCAGGACGCGTGCTCCTTCCTGCTGGCGTGTTTCCGAGAG
ACGGACGTGAGGATCGCCAACCAGCAGAGGGGTGTCGGGAAAAAGCGCAA
GGAGCGCGGGGGGGCGGGGTCTGCGGCGAGCCCCCGCCGCCGGTCCAGAA
GGAACCCCCACACGCGTAACGTTGTAGAAGCATGTTGTTTTCCCTTGAGG
AGTAAAGGAGTCGTTTCTGGATGTTGA
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