prot_E_fasciculatus_S2_contig9395.17442.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig9395.17442.1
Unique Nameprot_E_fasciculatus_S2_contig9395.17442.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length46
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9395.17442.1 vs. uniprot
Match: D8LHR1_ECTSI (LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR1_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.620e-19
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0 
Query:    3 HADLEAETITIRNPSVWRGTNLDGYTLTDRLQRHTYHFPDGFVL 46
            HADLEAET+TIRNPSVWRG NL GYTLTDRLQRHTYHFP+ FVL
Sbjct:   52 HADLEAETVTIRNPSVWRGANLAGYTLTDRLQRHTYHFPERFVL 95
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9395.17442.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR1_ECTSI1.620e-1988.64LTD domain-containing protein n=2 Tax=Ectocarpus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036415Lamin tail domain superfamilySUPERFAMILY74853Lamin A/C globular tail domaincoord: 4..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9395contigE_fasciculatus_S2_contig9395:5510..5647 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9395.17442.1mRNA_E_fasciculatus_S2_contig9395.17442.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig9395 5489..5647 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig9395.17442.1 ID=prot_E_fasciculatus_S2_contig9395.17442.1|Name=mRNA_E_fasciculatus_S2_contig9395.17442.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=46bp
MPHADLEAETITIRNPSVWRGTNLDGYTLTDRLQRHTYHFPDGFVL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036415Lamin_tail_dom_sf