mRNA_E_fasciculatus_S2_contig9395.17442.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9395.17442.1
Unique NamemRNA_E_fasciculatus_S2_contig9395.17442.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9395.17442.1 vs.
Match: LTD (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR1_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.430e-24
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 LFRPPPYMPHADLEAETITIRNPSVWRGTNLDGYTLTDRLQRHTYHFPDGFVL 159
            LFRPPP++ HADLEAET+TIRNPSVWRG NL GYTLTDRLQRHTYHFP+ FVL
Sbjct:   43 LFRPPPFIAHADLEAETVTIRNPSVWRGANLAGYTLTDRLQRHTYHFPERFVL 95
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9395.17442.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
LTD3.430e-2484.91domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9395contigE_fasciculatus_S2_contig9395:5489..5647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score89.0
Seed ortholog evalue6.4e-16
Seed eggNOG ortholog2880.D8LHR1
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs28XRH@1,2R4IT@2759
Cds size138
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842588.6517324-UTR-E_fasciculatus_S2_contig9395:5488..55091696842588.6517324-UTR-E_fasciculatus_S2_contig9395:5488..5509Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9395 5489..5509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842588.6655424-CDS-E_fasciculatus_S2_contig9395:5509..56471696842588.6655424-CDS-E_fasciculatus_S2_contig9395:5509..5647Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9395 5510..5647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9395.17442.1prot_E_fasciculatus_S2_contig9395.17442.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9395 5510..5647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9395.17442.1

>prot_E_fasciculatus_S2_contig9395.17442.1 ID=prot_E_fasciculatus_S2_contig9395.17442.1|Name=mRNA_E_fasciculatus_S2_contig9395.17442.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=46bp
MPHADLEAETITIRNPSVWRGTNLDGYTLTDRLQRHTYHFPDGFVL
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mRNA from alignment at E_fasciculatus_S2_contig9395:5489..5647+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9395.17442.1 ID=mRNA_E_fasciculatus_S2_contig9395.17442.1|Name=mRNA_E_fasciculatus_S2_contig9395.17442.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=159bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9395:5489..5647+ (Ectocarpus fasciculatus EfasUO2)
CTCTTCCGGCCGCCGCCTTACATGCCCCACGCCGACCTGGAAGCAGAAAC
GATTACGATTCGCAATCCCTCGGTGTGGAGAGGGACCAACCTCGACGGTT
ACACCCTGACCGATCGCCTGCAGCGACACACCTACCACTTCCCTGATGGG
TTTGTGCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9395:5489..5647+

>mRNA_E_fasciculatus_S2_contig9395.17442.1 ID=mRNA_E_fasciculatus_S2_contig9395.17442.1|Name=mRNA_E_fasciculatus_S2_contig9395.17442.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=138bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9395:5489..5647+ (Ectocarpus fasciculatus EfasUO2)
ATGCCCCACGCCGACCTGGAAGCAGAAACGATTACGATTCGCAATCCCTC
GGTGTGGAGAGGGACCAACCTCGACGGTTACACCCTGACCGATCGCCTGC
AGCGACACACCTACCACTTCCCTGATGGGTTTGTGCTG
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