mRNA_E_fasciculatus_S2_contig9371.17422.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9371.17422.1
Unique Name	mRNA_E_fasciculatus_S2_contig9371.17422.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ76_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 3.360e-57
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1

Query:    7 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKASIKADIKDNIELLAPAAAVDREKTITAISDKAKQQKASAAASKARALMETED 330
            DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKA+IKA+IKDNIELLAPAAAVDREKT+TAISDKAKQ KASAAASKARALMETED
Sbjct:   29 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARALMETED 135

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BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.
Match: TRASH (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 4.600e-56
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 1

Query:    7 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKASIKADIKDNIELLAPAAAVDREKTITAISDKAKQQKASAAASKARALMETED 330
            DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKA+IKA+IKDNIELLAPAAAVDREKT+TAISDKAKQ KASAAASKAR LMETED
Sbjct:   67 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARTLMETED 173

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BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.
Match: RL30, (ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.800e-30
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 1

Query:    7 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKASIKADIKDNIELLAPAAAVDREKTITAISDKAKQQKASAAASKARA 312
            DTTFDFEKRRNRPVKYDRE MGKTLLAMKKV EVQA+REKRFF+ RHK   A+EKA+I+ +++ NIELL PAAA DREK +  + +  +Q+++  A ++A+A
Sbjct:   67 DTTFDFEKRRNRPVKYDRELMGKTLLAMKKVTEVQAQREKRFFDVRHKDKAAREKAAIRTEVEQNIELLVPAAA-DREKALANVKEVIRQKESKNALTRAKA 167

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BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.
Match: TRASH (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSX3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-21
Identity = 48/89 (53.93%), Postives = 71/89 (79.78%), Query Frame = 1

Query:    7 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKASIKADIKDNIELLAPAAAVDREKTITAISDKAK 273
            D TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R + A  KEKA+++ ++K+N+ELLAPAAA  REK +  + +K K
Sbjct:   66 DATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKVLLNVREKVK 153

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BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.
Match: TRASH (domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUA5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.390e-21
Identity = 50/91 (54.95%), Postives = 72/91 (79.12%), Query Frame = 1

Query:    7 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKASIKADIKDNIELLAPAAAVDREKTITAISDKAKQQ 279
            D+TFDFEKRRNRPVKYDR+ MGKT+LAM++V+ ++  RE+RFF+NR K + A++K   + +I+ +IELLAPA A +RE+ +  + D AKQ+
Sbjct:   66 DSTFDFEKRRNRPVKYDRDLMGKTILAMRRVESIKKAREQRFFDNRVKDSKAEKKQQARVEIEKSIELLAPAVA-NREQVMRNVIDSAKQR 155

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BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.
Match: Ribosome (biogenesis protein rlp24 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7Z2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.780e-21
Identity = 48/91 (52.75%), Postives = 73/91 (80.22%), Query Frame = 1

Query:    7 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKASIKADIKDNIELLAPAAAVDREKTITAISDKAKQQ 279
            D TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R + A  KEKA+++ ++K+N+ELLAPAAA  REK +  + +K K++
Sbjct:  142 DATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKALLNVREKVKER 231

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BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB39_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.830e-21
Identity = 52/94 (55.32%), Postives = 73/94 (77.66%), Query Frame = 1

Query:    7 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKASIKADIKDNIELLAPAAAVDREKTITAISDKAKQQKAS 288
            D+TF+FEKRRNRPVKYDR  MGKT+LAM++V+ ++ KRE+RFF NR K A  ++KA  + +I+  IELLAPA A +RE+ +  + DKA+++ AS
Sbjct:   66 DSTFEFEKRRNRPVKYDRNLMGKTILAMQRVQAIKEKREERFFANRMKDAKKEQKAQARVEIEKGIELLAPAVA-NREEVMRNVVDKARERIAS 158

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BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.
Match: 60S (ribosomal protein L24 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH63_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.920e-21
Identity = 51/89 (57.30%), Postives = 69/89 (77.53%), Query Frame = 1

Query:    7 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKASIKADIKDNIELLAPAAAVDREKTITAISDKAK 273
            D+TFDFEKRRNRPVKYDR+ MGKT+LAMK+V+ ++  RE+RFFENR   A A++K   + +I+ +IELLAPA A +RE+ +  + D AK
Sbjct:   66 DSTFDFEKRRNRPVKYDRDLMGKTILAMKRVETIKKAREERFFENRMSDAKAEKKKQARVEIEKSIELLAPAVA-NREQVMRNVIDSAK 153

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BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.
Match: Hypothetical (protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PX55_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.400e-19
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1

Query:    7 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKASIKADIKDNIELLAPAAAVDREKTITAISDKAK 273
            D+TF+FEKRRNRPVKYDR+ MGKT+LAM++V+ ++  RE+RFF NR K A A++K   + +I+ +IELLAPA A  RE+ +  + D A+
Sbjct:   66 DSTFEFEKRRNRPVKYDRDLMGKTILAMQRVQNIKENREERFFANRMKDAKAEKKQQARVEIEKSIELLAPAVA-SREQVMKNVVDSAR 153

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.
Match: Hypothetical (protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DS96_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.670e-19
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1

Query:    7 DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKASIKADIKDNIELLAPAAAVDREKTITAISDKAK 273
            D TF+FEKRRNRPVKY+RE MGKTL AMKKVK++Q  RE RFF+ R K A  ++K   + +I+ +IELLAPA A  RE+ +  + D A+
Sbjct:   66 DATFEFEKRRNRPVKYNRELMGKTLQAMKKVKDIQNAREDRFFQARMKDAAVEKKQQARVEIEKSIELLAPAVA-SREQVMRNVVDSAR 153

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9371.17422.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	3.360e-57	96.30	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
TRASH	4.600e-56	95.37	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
RL30,	1.800e-30	63.73	ribosomal protein 30 60S large ribosomal subunit n...	[more]
TRASH	1.600e-21	53.93	domain-containing protein n=2 Tax=Monodopsidaceae ...	[more]
TRASH	2.390e-21	54.95	domain-containing protein n=2 Tax=Pseudo-nitzschia...	[more]
Ribosome	2.780e-21	52.75	biogenesis protein rlp24 n=1 Tax=Nannochloropsis g...	[more]
Hypothetical	2.830e-21	55.32	protein n=1 Tax=Ditylum brightwellii TaxID=49249 R...	[more]
60S	5.920e-21	57.30	ribosomal protein L24 n=1 Tax=Fragilariopsis cylin...	[more]
Hypothetical	2.400e-19	53.93	protein n=1 Tax=Asterionellopsis glacialis TaxID=3...	[more]
Hypothetical	4.670e-19	56.18	protein n=2 Tax=Amphiprora paludosa TaxID=265537 R...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9371	contig	E_fasciculatus_S2_contig9371:1404..2899 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	183.7
Seed ortholog evalue	4.6e-44
Seed eggNOG ortholog	2880.D7FZ76
Preferred name	RSL24D1
Model size	333
KEGG ko	ko:K02896
KEGG Pathway	ko03010,map03010
KEGG Module	M00177,M00179
Hectar predicted targeting category	other localisation
GOs	GO:0000027,GO:0001671,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030234,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0051336,GO:0051345,GO:0060589,GO:0060590,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902626,GO:1990904
Exons	3
EggNOG free text desc.	assembly of large subunit precursor of preribosome
EggNOG OGs	COG2075@1,KOG1723@2759
Ec32 ortholog description	Ribosomal protein L24e-related
Ec32 ortholog	Ec-13_002830.1
Cds size	333
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842586.63573-CDS-E_fasciculatus_S2_contig9371:1403..1499	1696842586.63573-CDS-E_fasciculatus_S2_contig9371:1403..1499	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9371 1404..1499 +
1696842586.6538346-CDS-E_fasciculatus_S2_contig9371:2185..2365	1696842586.6538346-CDS-E_fasciculatus_S2_contig9371:2185..2365	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9371 2186..2365 +
1696842586.6701484-CDS-E_fasciculatus_S2_contig9371:2842..2899	1696842586.6701484-CDS-E_fasciculatus_S2_contig9371:2842..2899	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9371 2843..2899 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9371.17422.1	prot_E_fasciculatus_S2_contig9371.17422.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9371 1404..2899 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9371:1404..2899+
coding sequence from alignment at E_fasciculatus_S2_contig9371:1404..2899+

protein sequence of mRNA_E_fasciculatus_S2_contig9371.17422.1

>prot_E_fasciculatus_S2_contig9371.17422.1 ID=prot_E_fasciculatus_S2_contig9371.17422.1|Name=mRNA_E_fasciculatus_S2_contig9371.17422.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=111bp
NQDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHK
GALAKEKASIKADIKDNIELLAPAAAVDREKTITAISDKAKQQKASAAAS
KARALMETED*

mRNA from alignment at E_fasciculatus_S2_contig9371:1404..2899+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9371.17422.1 ID=mRNA_E_fasciculatus_S2_contig9371.17422.1|Name=mRNA_E_fasciculatus_S2_contig9371.17422.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1496bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9371:1404..2899+ (Ectocarpus fasciculatus EfasUO2)
AATCAGGACACGACGTTCGACTTCGAGAAGCGGCGGAATAGGCCGGTCAA
GTACGACAGGGAGGCCATGGGGAAGACTCTCCTCGCCATGAAGAAGGTGG
GGGGCAAAACCTTCCGCGAGTTCGCTGCTCTGTAGGGAAACCGTTGCAAG
GCGCAAACACGACGTGTGTTTTAACACGACGTGTGTTTTGTACGTGAAGC
ATGCAAGCATACCCCAGGTTTGCTCTTCCGCTGGCCCATCGCTGCTGTAA
AAACTGCGCGTACGGCGCCGGGAAGCGCAGGGAAAATACAGTTGTAGAAA
TGTTGCGGGGTTGAGTCTGTACAAGGTTATCCAATTTTTTTTTGCGCATT
CATGGGTGAGGGAGGTCCAGGCGAAGAGGGATTTGAGTCTACTTTAAATC
TATTCCTGGTATTATATTTGCAAGTATGGACAAGCGAAGGAGGTCTAGGC
GGAATGGGAAGTGAGTCTATAATACCCCGATATACCACCCTTTACTTTTT
TTGTTTTCATGATACTAGGTGGGCAAGCTTATTTGTGGTATTATACAAGT
ATTGAAAAACGAAGGAAATGGACAGAAGAGCGAGTGATTTTATGTAGCCC
TATACCACCCTTCATTGATTTTGTATTTTGTAGCCCCATACAGAAACCTC
TTCATGGCAACGTATATTATATACTATAAAATGAAGGAGGTCTACGCTGG
AGAGGAGGTGAGTCTACAATGTTCCCCTGTGCCACCCTTTGTTTCATTTT
ATTTATTTGTTTGTTTATTTTTATGTTTTTAGGTGAAGGAGGTCCAGGCG
AAGAGGGAGAAGCGATTCTTCGAGAACCGGCACAAGGGCGCCCTCGCGAA
GGAGAAGGCTTCCATCAAGGCCGATATCAAGGACAACATCGAGCTCCTCG
CTCCGGCGGCGGCGGTGGACAGGGAGAAGACCATCACGGCCATTTCGGAC
AAGGCCAAGCAGGTGTGTGTAGATACCATGGTCCTTTTTCTTTTTTTTTG
CGGTTGGTTGTTGTTGTCGTTTAGTTGTGTTGCAGCCGTTTTTTTGTCTT
TGTCTGCTGTTGTCGTCTCGGACAAAAGGCCAAGCAGGTGTGTGCATACC
ATGCTGTATTGTGTTGGTTATCGTTTAGGTGCGTTGCAGCTGTAGCGTTT
CCGCTGATGTCGTTATTGCCGCAGGTGTCGTGCTGTTGTTGTCGTTGTTG
CCGTTACCACTGCTAGTGCATGTGTGTGTTTTTGGCGCCATTCGCGGCAC
AACACCCTTTCGGTAGGAACCACCGCGCCACCCTCCCCGCAATTATTTCT
ATCGTTGCTACTGCACTTGTGCAGCCCTCCTTTCCGTTGTTTGCCTTTCG
ATCCTCTGTATCGCCACCCGACATGCCTTTGAACAAACACACAAGTTTTA
CCTACTCCCTCCGCCTCGCCCCGTGTCCCCGTCGATGAGCAGAAAGCCTC
TGCGGCAGCGTCGAAAGCGAGAGCTCTCATGGAGACGGAAGACTAA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9371:1404..2899+

>mRNA_E_fasciculatus_S2_contig9371.17422.1 ID=mRNA_E_fasciculatus_S2_contig9371.17422.1|Name=mRNA_E_fasciculatus_S2_contig9371.17422.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=333bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9371:1404..2899+ (Ectocarpus fasciculatus EfasUO2)
AATCAGGACACGACGTTCGACTTCGAGAAGCGGCGGAATAGGCCGGTCAA
GTACGACAGGGAGGCCATGGGGAAGACTCTCCTCGCCATGAAGAAGGTGA
AGGAGGTCCAGGCGAAGAGGGAGAAGCGATTCTTCGAGAACCGGCACAAG
GGCGCCCTCGCGAAGGAGAAGGCTTCCATCAAGGCCGATATCAAGGACAA
CATCGAGCTCCTCGCTCCGGCGGCGGCGGTGGACAGGGAGAAGACCATCA
CGGCCATTTCGGACAAGGCCAAGCAGCAGAAAGCCTCTGCGGCAGCGTCG
AAAGCGAGAGCTCTCATGGAGACGGAAGACTAA