mRNA_E_fasciculatus_S2_contig9353.17406.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9353.17406.1
Unique NamemRNA_E_fasciculatus_S2_contig9353.17406.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9353.17406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G260_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 1.520e-95
Identity = 148/162 (91.36%), Postives = 157/162 (96.91%), Query Frame = 1 
Query:   34 LESGSDYTMRVRDQSSDLEDISETFTIIGTSTSNVEITSPDGYTTLDAGGEVSVSWLYVGENTEFDIYLRQDGERMSSNLCADQEGGSCTATIPVASATITLPEEIENAADYRLLVVDKENDDAWGLSVELPVGVEAASIETDSDSAAATKLALVIGLSAGG 519
            LESGSDYT+RVRDQSSDLED SETFTIIGTSTSNVEITSPDGYTTL+AGG++SVSWLYVGENTEFDIYLRQDGER+S+NLCADQEGGSCTATIPVASATITLPEEIEN ADYRLLVVDK NDDAWGLSVELPVGV AAS++T SDS+AATKLALVIGLSAGG
Sbjct:  105 LESGSDYTVRVRDQSSDLEDTSETFTIIGTSTSNVEITSPDGYTTLNAGGDLSVSWLYVGENTEFDIYLRQDGERVSNNLCADQEGGSCTATIPVASATITLPEEIENGADYRLLVVDKVNDDAWGLSVELPVGVAAASVDTGSDSSAATKLALVIGLSAGG 266
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BLAST of mRNA_E_fasciculatus_S2_contig9353.17406.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6J4_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 1.190e-94
Identity = 149/162 (91.98%), Postives = 156/162 (96.30%), Query Frame = 1 
Query:   34 LESGSDYTMRVRDQSSDLEDISETFTIIGTSTSNVEITSPDGYTTLDAGGEVSVSWLYVGENTEFDIYLRQDGERMSSNLCADQEGGSCTATIPVASATITLPEEIENAADYRLLVVDKENDDAWGLSVELPVGVEAASIETDSDSAAATKLALVIGLSAGG 519
            LESGSDYT+RVRDQSSDLED SETFTIIGTSTSNVEITSPDGYTTL+AGG VSVSWLYVGEN EFDIYLRQ+GER+SSNLCADQEGGSCTATIPVASATITLPEEIENAADYRLLVVDK NDDAWGLSVELPVGV AAS++T SDS+AATKLALVIGLSAGG
Sbjct:  103 LESGSDYTVRVRDQSSDLEDTSETFTIIGTSTSNVEITSPDGYTTLNAGGVVSVSWLYVGENMEFDIYLRQNGERVSSNLCADQEGGSCTATIPVASATITLPEEIENAADYRLLVVDKVNDDAWGLSVELPVGVAAASVDTGSDSSAATKLALVIGLSAGG 264
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9353.17406.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.520e-9591.36protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.190e-9491.98protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9353contigE_fasciculatus_S2_contig9353:2264..3502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size549
Hectar predicted targeting categoryother localisation
Exons3
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842584.8592298-CDS-E_fasciculatus_S2_contig9353:2263..24341696842584.8592298-CDS-E_fasciculatus_S2_contig9353:2263..2434Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9353 2264..2434 -
1696842584.8774247-CDS-E_fasciculatus_S2_contig9353:2771..29911696842584.8774247-CDS-E_fasciculatus_S2_contig9353:2771..2991Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9353 2772..2991 -
1696842584.891405-CDS-E_fasciculatus_S2_contig9353:3344..35021696842584.891405-CDS-E_fasciculatus_S2_contig9353:3344..3502Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9353 3345..3502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9353.17406.1prot_E_fasciculatus_S2_contig9353.17406.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9353 2264..3502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9353.17406.1

>prot_E_fasciculatus_S2_contig9353.17406.1 ID=prot_E_fasciculatus_S2_contig9353.17406.1|Name=mRNA_E_fasciculatus_S2_contig9353.17406.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=183bp
PGSCWTYDFFSLESGSDYTMRVRDQSSDLEDISETFTIIGTSTSNVEITS
PDGYTTLDAGGEVSVSWLYVGENTEFDIYLRQDGERMSSNLCADQEGGSC
TATIPVASATITLPEEIENAADYRLLVVDKENDDAWGLSVELPVGVEAAS
IETDSDSAAATKLALVIGLSAGGERNDDDTSKG
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mRNA from alignment at E_fasciculatus_S2_contig9353:2264..3502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9353.17406.1 ID=mRNA_E_fasciculatus_S2_contig9353.17406.1|Name=mRNA_E_fasciculatus_S2_contig9353.17406.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1239bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9353:2264..3502- (Ectocarpus fasciculatus EfasUO2)
CCCGGCTCATGTTGGACGTATGATTTTTTCAGCCTGGAGTCTGGGTCCGA
CTACACGATGCGCGTTCGAGACCAGTCCTCCGACCTCGAGGACATCTCCG
AAACGTTCACCATCATCGGCACGTCTACATCGAACGTCGAGATCACGTCT
CCTGACGGGTGAGTTTGACGACAAGCCCTTGGCTAGTTTGGGGTGTTGAC
AATTAGAAATACATCTCGTAGATGAAAACCGGGAAAGCAGCTGACTTTCT
GTAGGTGCTTTCGCGCCATTGGCGGACCTTTTGCATCAGTTGAGCGTCCG
CAGGGAAGTTGGTCCTTCAGAGTGCACAACCGTTGCGCCGTCTCCCCGCC
CGCTCGACGCTATGATCGTCCACCCATCCGCAAACCCAACACCCCTCGTT
TTTCCTCACCTGCATCACCCCTCGAACGCTGCTTTTCGTGCCGGCTTGCC
TTTTCCTTCCGTGCGGGCGTTACAAAACGAAACGAAACGGAACGAACAAA
CCAACGAACAGGTACACGACGCTGGACGCCGGGGGCGAGGTCTCGGTGTC
GTGGCTGTACGTGGGCGAGAACACGGAGTTCGACATCTACCTGCGGCAGG
ACGGCGAGCGCATGAGCAGCAACCTCTGCGCTGACCAAGAGGGCGGCTCG
TGCACGGCGACGATCCCGGTGGCCTCGGCGACCATCACGCTGCCCGAGGA
GATCGAGAACGCCGCCGACTACAGGCTGCTGGTGAGATATGGGTGTAACG
GGAGTTCCTTTTTATTTAGTCGGGGGGTTTCGTCATATTTTTCTTGTGTT
TTGCATGAATACTGGTTCGATGGCGTTGGATAAGTTTTCTCGGTAGTTTT
TTTTGTTTTCCCCTCTGTAGTACACACGTGGAACATACTGTTTTTCGTGA
CTCGGGGTTCGATGGCGAGGTGAGCACAATTGTTGTTTGGCGCAATTGAG
TTTGTTTTAGTTTGTTTCAAGACGCAAACGGAAGTTAAGGCGAGCACCTG
TTTGTTGTCCTCCAGACGACCGGTTTGTAGTTCATCTGTGAAGCTTGGTA
CGCAATTTTTGACGACAGGTGGTGGACAAGGAAAACGACGATGCATGGGG
GCTGTCGGTCGAGCTGCCCGTGGGCGTAGAGGCTGCTTCCATCGAGACCG
ATTCCGACTCGGCCGCAGCGACCAAGCTGGCCTTGGTGATTGGCCTCAGT
GCCGGAGGTGAGAGAAACGATGACGACACATCTAAGGGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9353:2264..3502-

>mRNA_E_fasciculatus_S2_contig9353.17406.1 ID=mRNA_E_fasciculatus_S2_contig9353.17406.1|Name=mRNA_E_fasciculatus_S2_contig9353.17406.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=549bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9353:2264..3502- (Ectocarpus fasciculatus EfasUO2)
CCCGGCTCATGTTGGACGTATGATTTTTTCAGCCTGGAGTCTGGGTCCGA
CTACACGATGCGCGTTCGAGACCAGTCCTCCGACCTCGAGGACATCTCCG
AAACGTTCACCATCATCGGCACGTCTACATCGAACGTCGAGATCACGTCT
CCTGACGGGTACACGACGCTGGACGCCGGGGGCGAGGTCTCGGTGTCGTG
GCTGTACGTGGGCGAGAACACGGAGTTCGACATCTACCTGCGGCAGGACG
GCGAGCGCATGAGCAGCAACCTCTGCGCTGACCAAGAGGGCGGCTCGTGC
ACGGCGACGATCCCGGTGGCCTCGGCGACCATCACGCTGCCCGAGGAGAT
CGAGAACGCCGCCGACTACAGGCTGCTGGTGGTGGACAAGGAAAACGACG
ATGCATGGGGGCTGTCGGTCGAGCTGCCCGTGGGCGTAGAGGCTGCTTCC
ATCGAGACCGATTCCGACTCGGCCGCAGCGACCAAGCTGGCCTTGGTGAT
TGGCCTCAGTGCCGGAGGTGAGAGAAACGATGACGACACATCTAAGGGG
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