mRNA_E_fasciculatus_S2_contig9347.17401.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig9347.17401.1
Unique Name	mRNA_E_fasciculatus_S2_contig9347.17401.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV04_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 2.560e-59
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1

Query:    1 VPVALSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVRRISEGDAFLVLASDGVWEFMENQ 294
            VPVALSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVR ISEGDAFLVLASDGVWEFM NQ
Sbjct:  119 VPVALSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVRSISEGDAFLVLASDGVWEFMGNQ 216

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BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PER2_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.670e-36
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 1

Query:   13 LSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVRRISEGDAFLVLASDGVWEFMENQ 294
            LS+DHNP+ P E  RIE  GGFVSPPPE GLSARVWLD E+T+IGLAMSRSIGDHAVK +GVI  PE+++  I+  D F +LASDGVWEF+++Q
Sbjct:  226 LSNDHNPNLPTEQRRIEKAGGFVSPPPEPGLSARVWLDPEMTQIGLAMSRSIGDHAVKHIGVIPEPEVQIFDIAPEDQFFILASDGVWEFIDSQ 319

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BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.
Match: PPM-type (phosphatase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y735_AURAN)

HSP 1 Score: 132 bits (331), Expect = 5.800e-36
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 1

Query:    7 VALSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVRRISEGDAFLVLASDGVWEFMENQ 294
            V LS DHNP+ P E ERI   GGFVS PPEEGLSARVWLD++ T++GLAM RSIGD+AVK +GVIA PE++   +S+ D FLV+A+DGVWEF+ N+
Sbjct:  121 VPLSIDHNPNAPGERERIVKAGGFVSDPPEEGLSARVWLDRKCTQVGLAMGRSIGDNAVKRIGVIAEPEVRTHEVSDRDDFLVMATDGVWEFIPNE 216

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BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.
Match: PPM-type (phosphatase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBL0_THAPS)

HSP 1 Score: 130 bits (326), Expect = 6.800e-36
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = 1

Query:    1 VPVALSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVRRISEGDAFLVLASDGVWEFMENQ 294
            + V LS D NPD P E ERI   GGFVSPPPE GLS+RVWLD   T+IGLAM+RSIGDHAVK VGVIA P + V  + +GD F++LA+DGVWEF+ ++
Sbjct:  111 ITVPLSIDQNPDSPGEQERIIQAGGFVSPPPEPGLSSRVWLDSSHTQIGLAMARSIGDHAVKGVGVIAEPVVTVHTVEKGDEFMILATDGVWEFLSSE 208

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BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK78_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.450e-35
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 1

Query:    7 VALSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVRRISEGDAFLVLASDGVWEFMENQ 294
            + L+ DHNPD P E ERI + GGFVS PP EGLSARVWLD+ +TR+GLAM+RSIGD+AVK+VGVIA PE++   ISE D F++LASDGVWEF+ +Q
Sbjct:  342 LPLTIDHNPDAPGERERITAAGGFVSDPPGEGLSARVWLDRNMTRVGLAMARSIGDNAVKKVGVIAEPEVRKHLISENDLFMILASDGVWEFISSQ 437

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BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.
Match: Phosphatase (2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U8_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.980e-34
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1

Query:   13 LSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVRRISEGDAFLVLASDGVWEFMENQ 294
            LS D NP+ P E +RIE+ GGFVSPPPE GLSARVWLD+E+T+IGLAM+RSIGDHAVK +GVIA PE+    +   D FL+LASDGVWEF+ +Q
Sbjct:  321 LSIDQNPNSPAEQQRIEAAGGFVSPPPEPGLSARVWLDREMTQIGLAMARSIGDHAVKGIGVIAEPEVTEHFLGPDDQFLILASDGVWEFISSQ 414

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BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.
Match: PPM-type (phosphatase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RB05_THAOC)

HSP 1 Score: 132 bits (331), Expect = 4.780e-34
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 1

Query:    1 VPVALSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVRRISEGDAFLVLASDGVWEFMEN 291
            V V LS D NPD P E ERI S GGFVSPPPE GLS+RVWLD E T++GLAM+RSIGDHAVK VGVIA P ++  RI  GD F+++A+DGVWEF+++
Sbjct:  398 VAVPLSIDQNPDSPGEKERILSSGGFVSPPPEPGLSSRVWLDPEQTQVGLAMARSIGDHAVKGVGVIAEPVVETHRIVPGDEFVIMATDGVWEFIDS 494

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BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.
Match: PPC6-7 (protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y580_SYMMI)

HSP 1 Score: 121 bits (303), Expect = 1.710e-33
Identity = 60/98 (61.22%), Postives = 70/98 (71.43%), Query Frame = 1

Query:    1 VPVALSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVRRISEGDAFLVLASDGVWEFMENQ 294
            V V LS DH PD P+E  RI S GGFVSP PE GLSARVWLD+  T IGLAM RSIGD+AVK VGV+  PE+        D F+++ASDGVWEF+ +Q
Sbjct:   27 VAVDLSRDHKPDDPQEKARILSWGGFVSPAPEPGLSARVWLDENFTMIGLAMGRSIGDYAVKSVGVVPIPEVTKYEFHPDDDFVIMASDGVWEFISSQ 124

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BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3Z835_9STRA)

HSP 1 Score: 122 bits (305), Expect = 4.360e-33
Identity = 60/97 (61.86%), Postives = 74/97 (76.29%), Query Frame = 1

Query:    7 VALSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVRRISEG-DAFLVLASDGVWEFMENQ 294
            + LS D NPD P E ERI   GG+VSPPPE GL+ARVWLD  +T+IGLAM+RSIGDHAVK VGVIA P + V  I E  D F+++A+DGVWEF+ ++
Sbjct:   27 IPLSIDQNPDSPGEKERILDSGGYVSPPPEPGLTARVWLDPNMTQIGLAMARSIGDHAVKGVGVIAEPVVSVHTIDEELDEFVIIATDGVWEFISSE 123

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BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VDV0_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.310e-32
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 1

Query:    7 VALSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGLAMSRSIGDHAVKEVGVIATPEIKVRRISEGDAFLVLASDGVWEFMEN 291
            + L+ D NPD PEE+ERI   GG+VSPPP  GLSARVWLD E T+IGLAM+RSIGDHAV +VGVIA P +    ++  D F++LASDGVWEF+E+
Sbjct:  459 IDLTIDQNPDSPEEMERIVKLGGYVSPPPGPGLSARVWLDAEQTQIGLAMARSIGDHAVADVGVIADPVVSTYEVTPQDDFMILASDGVWEFLES 553

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig9347.17401.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PPM-type	2.560e-59	97.96	phosphatase domain-containing protein n=1 Tax=Ecto...	[more]
Hypothetical	1.670e-36	68.09	protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re...	[more]
PPM-type	5.800e-36	64.58	phosphatase domain-containing protein (Fragment) n...	[more]
PPM-type	6.800e-36	63.27	phosphatase domain-containing protein (Fragment) n...	[more]
Hypothetical	2.450e-35	66.67	protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ...	[more]
Phosphatase	1.980e-34	67.02	2C-like domain-containing protein n=1 Tax=Tribonem...	[more]
PPM-type	4.780e-34	65.98	phosphatase domain-containing protein n=1 Tax=Thal...	[more]
PPC6-7	1.710e-33	61.22	protein (Fragment) n=1 Tax=Symbiodinium microadria...	[more]
Hypothetical	4.360e-33	61.86	protein n=1 Tax=Skeletonema marinoi TaxID=267567 R...	[more]
Hypothetical	4.310e-32	63.16	protein n=1 Tax=Amphiprora paludosa TaxID=265537 R...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9347	contig	E_fasciculatus_S2_contig9347:4486..5211 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	195.3
Seed ortholog evalue	1.4e-47
Seed eggNOG ortholog	2880.D7FV04
Model size	296
Hectar predicted targeting category	other localisation
Exons	3
EggNOG free text desc.	protein serine/threonine phosphatase activity
EggNOG OGs	COG0631@1,KOG0698@2759
Cds size	294
COG Functional cat.	T
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842584.3016539-CDS-E_fasciculatus_S2_contig9347:4485..4635	1696842584.3016539-CDS-E_fasciculatus_S2_contig9347:4485..4635	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9347 4486..4635 +
1696842584.312265-CDS-E_fasciculatus_S2_contig9347:4897..4960	1696842584.312265-CDS-E_fasciculatus_S2_contig9347:4897..4960	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9347 4898..4960 +
1696842584.3281612-CDS-E_fasciculatus_S2_contig9347:5129..5210	1696842584.3281612-CDS-E_fasciculatus_S2_contig9347:5129..5210	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig9347 5130..5210 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9347.17401.1	prot_E_fasciculatus_S2_contig9347.17401.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig9347 4486..5210 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig9347:4486..5211+
coding sequence from alignment at E_fasciculatus_S2_contig9347:4486..5211+

protein sequence of mRNA_E_fasciculatus_S2_contig9347.17401.1

>prot_E_fasciculatus_S2_contig9347.17401.1 ID=prot_E_fasciculatus_S2_contig9347.17401.1|Name=mRNA_E_fasciculatus_S2_contig9347.17401.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp
VPVALSDDHNPDKPEELERIESCGGFVSPPPEEGLSARVWLDQELTRIGL
AMSRSIGDHAVKEVGVIATPEIKVRRISEGDAFLVLASDGVWEFMENQ

mRNA from alignment at E_fasciculatus_S2_contig9347:4486..5211+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig9347.17401.1 ID=mRNA_E_fasciculatus_S2_contig9347.17401.1|Name=mRNA_E_fasciculatus_S2_contig9347.17401.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=726bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9347:4486..5211+ (Ectocarpus fasciculatus EfasUO2)
GTGCCAGTAGCACTGTCAGACGATCACAACCCGGACAAACCCGAAGAGTT
GGAGCGCATCGAATCATGCGGTGGCTTCGTGAGCCCTCCTCCAGAGGAAG
GGCTGAGCGCCAGAGTATGGCTCGACCAAGAGCTGACGAGGATCGGTCTG
GTGACTATAACTCGAATACAAGCAACGGGGACAGTAGGTTTTTTCATGCA
CCATACTTTGGATGGCCGCCGGTGAAACTTGAACGTTATGTTTGGCGCGC
CAGATATGCAACGTGTTTGGGCCGAATGTCGACGAATGTAGAGTCACATG
GACACAATCAGACAGCGGCTCACAAACCCAACCCCTCAATCTTGTTTTCC
ACCGAGTTAGTGTATTCTGAGGTGTGTACGATTTTCCCGCCATTCACAAA
TGCGCCGACCAGGCAATGTCCAGGTCAATCGGAGACCATGCCGTGAAGGA
GGTGGGGGTCATTGCCACGCCGGAGGTACGCATCGTCCACGTTAGGGAAA
GTTGCGAATAAAATATCATGACTTGAACACGTTTCTGGCCCTGTTCTTGC
GATTTAACGGTTCTGCTTTAACTTGTCAGCCAGCCATTTGTTGAAATGAT
CGAAATCTCACTGGCTACAATTTGTTGTTTGTGACCACCTACAGATAAAG
GTTAGGAGGATTTCGGAGGGCGACGCGTTCCTCGTGCTGGCTTCAGATGG
AGTGTGGGAATTCATGGAAAACCAAC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9347:4486..5211+

>mRNA_E_fasciculatus_S2_contig9347.17401.1 ID=mRNA_E_fasciculatus_S2_contig9347.17401.1|Name=mRNA_E_fasciculatus_S2_contig9347.17401.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9347:4486..5211+ (Ectocarpus fasciculatus EfasUO2)
GTGCCAGTAGCACTGTCAGACGATCACAACCCGGACAAACCCGAAGAGTT
GGAGCGCATCGAATCATGCGGTGGCTTCGTGAGCCCTCCTCCAGAGGAAG
GGCTGAGCGCCAGAGTATGGCTCGACCAAGAGCTGACGAGGATCGGTCTG
GCAATGTCCAGGTCAATCGGAGACCATGCCGTGAAGGAGGTGGGGGTCAT
TGCCACGCCGGAGATAAAGGTTAGGAGGATTTCGGAGGGCGACGCGTTCC
TCGTGCTGGCTTCAGATGGAGTGTGGGAATTCATGGAAAACCAA