mRNA_E_fasciculatus_S2_contig9344.17400.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9344.17400.1
Unique NamemRNA_E_fasciculatus_S2_contig9344.17400.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9344.17400.1 vs.
Match: Retinoblastoma (binding protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T3_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 8.470e-48
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 1 
Query:    1 MLPGKYPRALALTADGVAHVVDIKENTADAVSPAGETVISPPSAASSAGNPSPAKKPRPAGGQAAASATAKRGPDLPAVLCLALDRRASRVCLGTCQGQILS 306
            MLPGKYPRA+ALTADGVAHVVDIKENTADAVSPA  T+ISPPSAASSAGNPSPAKKPRPAG QAAA+ATA RGP LPAVLCLALDRRASRVCLGTCQGQ+LS
Sbjct:  118 MLPGKYPRAMALTADGVAHVVDIKENTADAVSPAAATIISPPSAASSAGNPSPAKKPRPAG-QAAAAATANRGPALPAVLCLALDRRASRVCLGTCQGQVLS 218
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BLAST of mRNA_E_fasciculatus_S2_contig9344.17400.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX51_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 4.240e-41
Identity = 85/105 (80.95%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:    1 MLPGKYPRALALTADGVAHVVDIKENTADAVSPAGETVISPPSAASSAGNPSPAKKPRPAG---GQAAASATAKRGPDLPAVLCLALDRRASRVCLGTCQGQILS 306
            MLPGKYPRA+ALTADGVAHVVDIKENT DAVSPA E +ISPPSAASSAG+PSPAKKPRPAG           A RGP LPAVLCLALDRRASRVCLGTCQGQ+LS
Sbjct:    5 MLPGKYPRAMALTADGVAHVVDIKENTVDAVSPAEERIISPPSAASSAGSPSPAKKPRPAGQVXXXXXXXVAANRGPALPAVLCLALDRRASRVCLGTCQGQVLS 109
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9344.17400.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Retinoblastoma8.470e-4891.18binding protein 5 n=1 Tax=Ectocarpus siliculosus T... [more]
Uncharacterized4.240e-4180.95protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9344contigE_fasciculatus_S2_contig9344:3649..4954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score172.2
Seed ortholog evalue1.3e-40
Seed eggNOG ortholog2880.D7G0T3
Preferred nameRBBP5
Model size308
KEGG koko:K14961
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000785,GO:0000790,GO:0000922,GO:0001067,GO:0002682,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007610,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010228,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015630,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018027,GO:0018193,GO:0018205,GO:0018991,GO:0019098,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032200,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034401,GO:0034641,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0036211,GO:0040029,GO:0042054,GO:0042393,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043627,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044648,GO:0044665,GO:0044666,GO:0044703,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048188,GO:0048468,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051568,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0060290,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0080182,GO:0090304,GO:0097159,GO:0097549,GO:0140030,GO:0140034,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903706,GO:1904837,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Exons3
EggNOG free text desc.histone H3-K4 methylation
EggNOG OGsKOG1273@1,KOG1273@2759
Ec32 ortholog descriptionWD40-repeat domain protein
Ec32 orthologEc-23_001600.1
Cds size306
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842584.2337956-CDS-E_fasciculatus_S2_contig9344:3648..37231696842584.2337956-CDS-E_fasciculatus_S2_contig9344:3648..3723Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9344 3649..3723 +
1696842584.2505126-CDS-E_fasciculatus_S2_contig9344:4490..46041696842584.2505126-CDS-E_fasciculatus_S2_contig9344:4490..4604Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9344 4491..4604 +
1696842584.2690663-CDS-E_fasciculatus_S2_contig9344:4837..49541696842584.2690663-CDS-E_fasciculatus_S2_contig9344:4837..4954Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9344 4838..4954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9344.17400.1prot_E_fasciculatus_S2_contig9344.17400.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9344 3649..4954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9344.17400.1

>prot_E_fasciculatus_S2_contig9344.17400.1 ID=prot_E_fasciculatus_S2_contig9344.17400.1|Name=mRNA_E_fasciculatus_S2_contig9344.17400.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=102bp
MLPGKYPRALALTADGVAHVVDIKENTADAVSPAGETVISPPSAASSAGN
PSPAKKPRPAGGQAAASATAKRGPDLPAVLCLALDRRASRVCLGTCQGQI
LS
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mRNA from alignment at E_fasciculatus_S2_contig9344:3649..4954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9344.17400.1 ID=mRNA_E_fasciculatus_S2_contig9344.17400.1|Name=mRNA_E_fasciculatus_S2_contig9344.17400.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1306bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9344:3649..4954+ (Ectocarpus fasciculatus EfasUO2)
ATGTTACCCGGAAAGTACCCGCGTGCGCTGGCGCTGACGGCTGACGGGGT
CGCTCACGTGGTGGACATCAAGGAGGTAGGCGCAGGTCGTGCCTCCCTCG
CTGCTGTTGGTCTCCCTTGTCCTAGATACCTCTTTCAGGAGGGACAGTTG
CTTTCGTGTCGAGCTGTGATGCGCTGGTGTAGGAGCACGGACAAAACACC
AAAGTCTCCCCCCCCCTCTCCTTTCTGCTCCGTCCTCTCGAGGACGCGTT
GTCGAGGATTTATTTCAAAGGCATGGAAACATGAGTTCCCACACCCATAC
ACACAAGCTCTAGCAACATTCAAGGTTCATGACTTGTCGCAGATGACGCC
AGATATCACCCCCCTCCCCTGGACCGATTTTCAAAGACCGCTTATTCCGC
AGCAGAAGGAGTGGCCGTGCCGAAACTGAGGGCGTTGCAAGAACCGTCTC
ATCGAGAGCTTTCCGAAAACGTATCGTTTCTTTCGCAGGCCATTTTCGTC
CTGGAGTAGTATGTCCTTGAAAAATCGGTCCAGGGGGTGTGGTATCTTGT
GTCACCTGCACGACGGTAGTCTCCTCGTTCCTTGCTCGTGGACCCGCGAC
TGCGGCACCTTGCTTCTCCGCCCGCCCGCCTACCGCCCCCAAGCACCAAC
ATTCCGTGTAACCACCCCGTGGGAATCAAACCACGGAACGGAATTTCCGC
GTCGTTATATGACGAATGAGTGAGGTCACCATCATTCCGTGCAGCCAATC
CCGTGGAACTTGATCACGGAACGGAACCGCGCTTTGTATATGACAATGGA
GTGTAATCTTGTGTGTGTGTGTGTGTCGTTTTTTCGTGGCAGAACACGGC
TGATGCCGTCAGTCCCGCCGGAGAGACGGTTATCTCGCCCCCCTCTGCGG
CCTCCTCCGCTGGAAACCCAAGCCCGGCCAAGAAACCCAGACCCGCCGGC
GGCCAGGTGCGGTGTATTTCCGTTTGAGTGACCGTTCCGGGAACGTTCTG
GTGTGGTGGTGTGAGCCCTTGCTCACAAGTTTGTGTTTTGGAGAGGAAGC
ATGGCTGGTGCGTGATGTTGTTCTGTTTCCTGTTGCCGGATGTGGTCAGG
CTGCTGCTGCTGCTGCTGCTCCCACCACCGCCATCCGCCCCCCCCCCTAC
ACGATAACTTATCCCCTTTGCTGTGCCGGTTGCTGTCAGGCTGCTGCTTC
CGCCACCGCCAAGCGTGGGCCGGATCTACCCGCGGTGCTCTGCCTCGCCC
TCGACCGGAGAGCCTCTCGGGTGTGCCTAGGCACGTGCCAGGGGCAGATC
CTCTCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9344:3649..4954+

>mRNA_E_fasciculatus_S2_contig9344.17400.1 ID=mRNA_E_fasciculatus_S2_contig9344.17400.1|Name=mRNA_E_fasciculatus_S2_contig9344.17400.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=306bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9344:3649..4954+ (Ectocarpus fasciculatus EfasUO2)
ATGTTACCCGGAAAGTACCCGCGTGCGCTGGCGCTGACGGCTGACGGGGT
CGCTCACGTGGTGGACATCAAGGAGAACACGGCTGATGCCGTCAGTCCCG
CCGGAGAGACGGTTATCTCGCCCCCCTCTGCGGCCTCCTCCGCTGGAAAC
CCAAGCCCGGCCAAGAAACCCAGACCCGCCGGCGGCCAGGCTGCTGCTTC
CGCCACCGCCAAGCGTGGGCCGGATCTACCCGCGGTGCTCTGCCTCGCCC
TCGACCGGAGAGCCTCTCGGGTGTGCCTAGGCACGTGCCAGGGGCAGATC
CTCTCG
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